Clone Sequence Records
BS12647.3prime Sequence
862 bp (771 high quality bases) assembled on 2006-10-13
> BS12647.3prime
ATGGTCTAGAAAGCTTTTAGCACCAAGAGAAGAAAGGGCTCTTATTTTGG
AAGCGCTGCGTAAAAGAGAAGAAACGACTGCCACTTGATCGCTCGACAAT
CACCGCTGGCATCTGGACCAGTTGCACCGGCGACTTGCCATCCCTCAGTG
CCTGTGTGAGATTTAGAATCTGGCCCCGCATCACCGACATCTGGCGCTCG
AAGAGACGCTTGTCAAAGCCGCGATCCTGCTGGAAGAGGTACAACAACTC
CGTGCAGATCTCCTCTACAAAGTTCATATCTGACAACTGCGGCAGCACCT
GCTCCTTGATTTCTTCGCTAAACGGAATTTTCGCCTGTGGCAACCAGGCC
CAATGGTAGGGATAAGCTCGCCAAGAGTCCGGATGCTTGAAGGGAAAAGC
GAGACCATTGTCGATGGCAGCGATCCGAATGAAGGCCGAGTTCACCACAT
TCCAATCGGGTTCCGACGTAGGGGGGGATCTCGACGAGGGTTCATCTTCG
CTGCTGGCCAAACTGCTGCTATCTTGCTGTGCACTTGTGGCTGCTCCACC
CGCTAGGTGGTTCGAAGGGCGACCACCAGTAGTCGGTTTCGGGCTAGCCT
GCGGCGGCTCGTTTAGGTCAACGATTTTTGAAGCCCCCAACGCATTGGGC
AATTTGGGGGTCACAACTCCGTGCATAGTTCTGCCGCCAGTGCCTCCCAC
CTGGGTCGTGATCTTAGGGGCCACGTACTTGATCAGCCAGTTGTCGTTGC
CACGGTCCGTGTTGCGTATGATATAATCGAGCACGACGAGGCGCTCGAAC
TGCAGTTGGAACGACTTCGCCACTGAAGGCGGCAAGGGGTCGCTTTCAAG
CGCCGCAGCCAT
BS12647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2929-PB | 1692 | Pi4KIIalpha-RB | 847..1692 | 861..17 | 4165 | 99.7 | Minus |
| CG2929-PA | 2133 | Pi4KIIalpha-RA | 1288..2133 | 861..17 | 4165 | 99.7 | Minus |
| CG2929-PC | 2133 | Pi4KIIalpha-RC | 1288..2133 | 861..17 | 4165 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 1615..2461 | 861..16 | 4195 | 99.8 | Minus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 1642..2488 | 861..16 | 4195 | 99.8 | Minus |
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 1085..1931 | 861..16 | 4195 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5558499..5559271 | 90..861 | 3800 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5558367..5558436 | 21..90 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:26:27 has no hits.
BS12647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:56 Download gff for
BS12647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2929-PC | 1286..2133 | 17..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:05:56 Download gff for
BS12647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 1083..1931 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:10 Download gff for
BS12647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 1083..1931 | 16..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:10 Download gff for
BS12647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5558364..5558435 | 18..89 | 98 | <- | Plus |
| 3R | 5558499..5559271 | 90..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:05:56 Download gff for
BS12647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1384086..1384157 | 18..89 | 98 | <- | Plus |
| arm_3R | 1384221..1384993 | 90..862 | 99 | | Plus |
BS12647.5prime Sequence
836 bp (741 high quality bases) assembled on 2006-10-13
> BS12647.5prime
GAAGTTATCAGTCGACATGCCGAAAAACAACATTAAGTCGTTTCTCAGCC
AGGTGCCGTTGCCGAACGCTATAGCAGCCAAGTACCAAGAGCCAAGCGAA
CCAAGAGACGATGAGCAGCCCACGACAAGCAAGGATGCGCTGGAGAGCAG
CTCCTCGGTGCCCTCCGCCTCCGCCGCCTACGCCTGCATCTGTTGCGAGC
ACAAGTGCCCGCTGGAGAAGGATTTCTTGGAGTCGCAGTCGGACAAGGAG
GGCGATCCGCCCTTTCTGGTGAACTCACCGTCGATGGCGCGTGACTCCAA
AGACACAGTAACCGTTCAAATCGCGGCTCCGCGCTGCAATTGTGCCAACT
GCCCGCTGAGGAACCTCTATGACCCGCTTTTCTCGGAGATCGTGGCGAAG
GCGGAGGGGGCCATCGAGAATGGTGTGCTGCCCGAGCGCATTTACCAGGG
TAGCAGTGGTTCCTACTTTGTCAAGGATGCCTCCCATCAATGCCTGGCCG
TATTTAAGCCAAAGGACGAGGAACCCTATGGCAGACTGAATCCGAAGTGG
ACGAAATGGATGCATAAGCTGTGCTGCCCGTGTTGTTTTGGCCGAGCTTG
CTTGATTCCCAATCAGGGGTACCTCTCCGAATCAGGAGCCAGCTTGGTTG
ATCGAAAACTCAATCTGAATGTGGTTCCAAAGACGCGAGTGGTCAGATTG
GTTGCCGAGAGCTTTAACTACGCACGCATTGATCGACAGAAGGCCAAGCT
GAAGAAGCGCATTAAAGAGCACTATCCGTCGGCTCACTTCAACCGAATGA
GCCTTTCTCTAAAGACTGGCTCCTTTCAGCTCTTCG
BS12647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2929-PB | 1692 | Pi4KIIalpha-RB | 1..820 | 17..836 | 4075 | 99.8 | Plus |
| CG2929-PA | 2133 | Pi4KIIalpha-RA | 794..1261 | 369..836 | 2315 | 99.7 | Plus |
| CG2929-PC | 2133 | Pi4KIIalpha-RC | 794..1261 | 369..836 | 2315 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 238..1058 | 16..836 | 4090 | 99.9 | Plus |
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 1121..1588 | 369..836 | 2325 | 99.8 | Plus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 1148..1615 | 369..836 | 2325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5560777..5561129 | 368..16 | 1765 | 100 | Minus |
| 3R | 32079331 | 3R | 5559379..5559575 | 814..618 | 970 | 99.5 | Minus |
| 3R | 32079331 | 3R | 5559669..5559802 | 621..488 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 5560075..5560193 | 487..369 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:35:26 has no hits.
BS12647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:56 Download gff for
BS12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2929-PB | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:17:55 Download gff for
BS12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 231..1058 | 7..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:09 Download gff for
BS12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 231..1058 | 7..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:09 Download gff for
BS12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5559672..5559802 | 488..618 | 100 | <- | Minus |
| 3R | 5560075..5560193 | 369..487 | 100 | <- | Minus |
| 3R | 5560777..5561136 | 7..368 | 98 | | Minus |
| 3R | 5559298..5559319 | 815..836 | 100 | <- | Minus |
| 3R | 5559379..5559574 | 619..814 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:17:55 Download gff for
BS12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1385020..1385041 | 815..836 | 100 | <- | Minus |
| arm_3R | 1385101..1385296 | 619..814 | 99 | <- | Minus |
| arm_3R | 1385394..1385524 | 488..618 | 100 | <- | Minus |
| arm_3R | 1385797..1385915 | 369..487 | 100 | <- | Minus |
| arm_3R | 1386499..1386858 | 7..368 | 98 | | Minus |
BS12647.complete Sequence
1724 bp assembled on 2008-08-14
GenBank Submission: FJ637248
> BS12647.complete
GAAGTTATCAGTCGACATGCCGAAAAACAACATTAAGTCGTTTCTCAGCC
AGGTGCCGTTGCCGAACGCTATAGCAGCCAAGTACCAAGAGCCAAGCGAA
CCAAGAGACGATGAGCAGCCCACGACAAGCAAGGATGCGCTGGAGAGCAG
CTCCTCGGTGCCCTCCGCCTCCGCCGCCTACGCCTGCATCTGTTGCGAGC
ACAAGTGCCCGCTGGAGAAGGATTTCTTGGAGTCGCAGTCGGACAAGGAG
GGCGATCCGCCCTTTCTGGTGAACTCACCGTCGATGGCGCGTGACTCCAA
AGACACAGTAACCGTTCAAATCGCGGCTCCGCGCTGCAATTGTGCCAACT
GCCCGCTGAGGAACCTCTATGACCCGCTTTTCTCGGAGATCGTGGCGAAG
GCGGAGGGGGCCATCGAGAATGGTGTGCTGCCCGAGCGCATTTACCAGGG
TAGCAGTGGTTCCTACTTTGTCAAGGATGCCTCCCATCAATGCCTGGCCG
TATTTAAGCCAAAGGACGAGGAACCCTATGGCAGACTGAATCCGAAGTGG
ACGAAATGGATGCATAAGCTGTGCTGCCCGTGTTGTTTTGGCCGAGCTTG
CTTGATTCCCAATCAGGGGTACCTCTCCGAATCAGGAGCCAGCTTGGTTG
ATCGAAAACTCAATCTGAATGTGGTTCCAAAGACGCGAGTGGTCAGATTG
GTTGCCGAGAGCTTTAACTACGCACGCATTGATCGACAGAAGGCCAAGCT
GAAGAAGCGCATTAAAGAGCACTATCCGTCGGCTCACTTCAACCGAATGA
GCCTTCCTCTAAAGACTGGCTCCTTTCAGCTCTTCGTGGAGGGTTACAAG
GATGCGGACTATTGGCTGCGGCGCTTTGAAAGCGAACCCTTGCCGCCTTC
AGTGGCGAAGTCGTTCCAACTGCAGTTCGAGCGCCTCGTCGTGCTCGATT
ATATCATACGCAACACGGACCGTGGCAACGACAACTGGCTGATCAAGTAC
GTGGCCCCTAAGATCACGACCCAGGTGGGAGGCACTGGCGGCAGAACTAT
GCACGGAGTTGTGACCCCCAAATTGCCCAATGCGTTGGGGGCTTCAAAAA
TCGTTGACCTAAACGAGCCGCCGCAGGCTAGCCCGAAACCGACTACTGGT
GGTCGCCCTTCGAACCACCTAGCGGGTGGAGCAGCCACAAGTGCACAGCA
AGATAGCAGCAGTTTGGCCAGCAGCGAAGATGAACCCTCGTCGAGATCCC
CCCCTACGTCGGAACCCGATTGGAATGTGGTGAACTCGGCCTTCATTCGG
ATCGCTGCCATCGACAATGGTCTCGCTTTTCCCTTCAAGCATCCGGACTC
TTGGCGAGCTTATCCCTACCATTGGGCCTGGTTGCCACAGGCGAAAATTC
CGTTTAGCGAAGAAATCAAGGAGCAGGTGCTGCCGCAGTTGTCAGATATG
AACTTTGTAGAGGAGATCTGCACGGAGTTGTTGTACCTCTTCCAGCAGGA
TCGCGGCTTTGACAAGCGTCTCTTCGAGCGCCAGATGTCGGTGATGCGGG
GCCAGATTCTAAATCTCACACAGGCACTGAGGGATGGCAAGTCGCCGGTG
CAACTGGTCCAGATGCCAGCGGTGATTGTCGAGCGATCAAGTGGCAGTCG
TTTCTTCTCTTTTACGCAGCGCTTCCAAAATAAGAGCCCTTTCTTCTCTT
GGTGCTAAAAGCTTTCTAGACCAT
BS12647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RB | 1692 | CG2929-PB | 1..1692 | 17..1708 | 8460 | 100 | Plus |
| Pi4KIIalpha-RC | 2133 | CG2929-PC | 794..2133 | 369..1708 | 6700 | 100 | Plus |
| Pi4KIIalpha-RA | 2133 | CG2929-PA | 794..2133 | 369..1708 | 6700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 238..1931 | 16..1709 | 8470 | 100 | Plus |
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 1121..2461 | 369..1709 | 6705 | 100 | Plus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 1148..2488 | 369..1709 | 6705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5558499..5559321 | 1635..813 | 4115 | 100 | Minus |
| 3R | 32079331 | 3R | 5560777..5561129 | 368..16 | 1765 | 100 | Minus |
| 3R | 32079331 | 3R | 5559379..5559575 | 814..618 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 5559669..5559802 | 621..488 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 5560075..5560193 | 487..369 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 5558367..5558436 | 1704..1635 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:31:10 has no hits.
BS12647.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:49:42 Download gff for
BS12647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 231..1931 | 7..1709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:09 Download gff for
BS12647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 239..1928 | 17..1706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:18 Download gff for
BS12647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 239..1928 | 17..1706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:16 Download gff for
BS12647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 239..1928 | 17..1706 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:16 Download gff for
BS12647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5559379..5559574 | 619..814 | 100 | <- | Minus |
| 3R | 5559672..5559802 | 488..618 | 100 | <- | Minus |
| 3R | 5560075..5560193 | 369..487 | 100 | <- | Minus |
| 3R | 5558365..5558435 | 1636..1706 | 98 | <- | Minus |
| 3R | 5558499..5559319 | 815..1635 | 100 | <- | Minus |
| 3R | 5560777..5561128 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:09 Download gff for
BS12647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1384087..1384157 | 1636..1706 | 98 | <- | Minus |
| arm_3R | 1384221..1385041 | 815..1635 | 100 | <- | Minus |
| arm_3R | 1385101..1385296 | 619..814 | 100 | <- | Minus |
| arm_3R | 1385394..1385524 | 488..618 | 100 | <- | Minus |
| arm_3R | 1385797..1385915 | 369..487 | 100 | <- | Minus |
| arm_3R | 1386499..1386850 | 17..368 | 100 | | Minus |
BS12647.pep Sequence
Translation from 16 to 1707
> BS12647.pep
MPKNNIKSFLSQVPLPNAIAAKYQEPSEPRDDEQPTTSKDALESSSSVPS
ASAAYACICCEHKCPLEKDFLESQSDKEGDPPFLVNSPSMARDSKDTVTV
QIAAPRCNCANCPLRNLYDPLFSEIVAKAEGAIENGVLPERIYQGSSGSY
FVKDASHQCLAVFKPKDEEPYGRLNPKWTKWMHKLCCPCCFGRACLIPNQ
GYLSESGASLVDRKLNLNVVPKTRVVRLVAESFNYARIDRQKAKLKKRIK
EHYPSAHFNRMSLPLKTGSFQLFVEGYKDADYWLRRFESEPLPPSVAKSF
QLQFERLVVLDYIIRNTDRGNDNWLIKYVAPKITTQVGGTGGRTMHGVVT
PKLPNALGASKIVDLNEPPQASPKPTTGGRPSNHLAGGAATSAQQDSSSL
ASSEDEPSSRSPPTSEPDWNVVNSAFIRIAAIDNGLAFPFKHPDSWRAYP
YHWAWLPQAKIPFSEEIKEQVLPQLSDMNFVEEICTELLYLFQQDRGFDK
RLFERQMSVMRGQILNLTQALRDGKSPVQLVQMPAVIVERSSGSRFFSFT
QRFQNKSPFFSWC*
BS12647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-PB | 563 | CG2929-PB | 1..563 | 1..563 | 2991 | 100 | Plus |
| Pi4KIIalpha-PC | 710 | CG2929-PC | 266..710 | 119..563 | 2363 | 100 | Plus |
| Pi4KIIalpha-PA | 710 | CG2929-PA | 266..710 | 119..563 | 2363 | 100 | Plus |
