Clone Sequence Records
BS12652.3prime Sequence
804 bp (768 high quality bases) assembled on 2006-10-13
> BS12652.3prime
ATGGTCTAGAAAGCTTTCAGTCGCCGTCACCGTGGCTTTGCAATTGTCGT
GTGTCACAAGATCCACTTTGATCACCGTCATTCCGCAATCTATGCGATCT
GGTTCGGCTTGCAGGTAGACAGACTTCTATGTCCTGGGGCTCGCTGGGGC
AGGCGGCGGTAAGTAGATCCACGGAGTAATCATCCCGGACGTGCAGGGTG
TCGCCAAGCTGACAAAGAATGCCCCGGAACTCGGGGTAGGCCTGGCAGCA
GTCATCGGGAATAGAGATTGACAGCCGCAGCGACATCACGTTTCCGGGAG
CGAAGGGATAGTCAAGGAGTCTGCGACTGGTGTCTCGCTTTCCCAGACCC
ACGTGCGAGACCACGACTGGGGAGCAGTTGTACTTGCGAGCCAACTCCAC
TGTCTCGGCTGCACTGCTGACACCCTTAGGCAACACGCGGAGCTCCCTTA
GGTGCCGAGCCAGAAGGATTAAATAGGCGGCGTGCAGTTCCAGAGGTGTG
CGGACGGCACCCTCACATCCTGCGTACTGTATCAACGAGCACAGATCCCG
ACGCATGTCCAACAGCGCACCATAAATCATTTTCTGGGGCGGCGTGAATC
GCCCCGAGCTGGGCCAGCATCTGGCCAGTCCCCCCTCGTAGCCTCCGTAC
TGACATCCAGCGTCCATCTGCCACAGCCCATTGCCATCCAATCCGCACGA
AGTTTTTGTCACGTCGGGACGAGCGTGGCGCAAACGGCACTTGTAGTCAA
ATGAAGCGGCCAGCTCCTGAGGAATCTGATGATGCTGTGCGATTACCTCC
GCCA
BS12652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-PA | 1605 | CG32454-RA | 818..1605 | 804..17 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-RA | 1835 | CG32454-RA | 861..1648 | 804..17 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22730626..22731413 | 804..17 | 3940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:16:59 has no hits.
BS12652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:00 Download gff for
BS12652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-PA | 819..1605 | 17..803 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:44:39 Download gff for
BS12652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 862..1650 | 13..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:15 Download gff for
BS12652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 862..1650 | 13..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:15 Download gff for
BS12652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22730627..22731415 | 13..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:44:39 Download gff for
BS12652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22723727..22724515 | 13..803 | 99 | | Minus |
BS12652.5prime Sequence
903 bp (721 high quality bases) assembled on 2006-10-13
> BS12652.5prime
GAAGTTATCAGTCGACATGCTGCGGTTTCTTCGAAATTTTAAGTATTATG
CCTGGCAAGAGGTGCGTCGCGGTTGTTCCGTAGTGGCCCCACCGGATAGG
AGTGATGTGCTTCTGGTGCTGCCAACGGTCTGGCCCTCCGAGCTTACCAA
GAGGATCCGCCCGCTCTCAGTGCCCGACCTGATCGAGAAGTTCTCCTGCG
ATGCCCCTGGCGGACAGTTCGCCACAATGTCCGAGTACCTGCGCAGCGAT
CCACGGCCCGACGGAGTTCTCCTGCCGGATGAAATTGATCTGCACCGAAA
AATGTCCCTGGACGACCTTAATTCTTATATGCACGCGAAGGACGCATTCA
AAGAGCCGCACAGGAAAAACCGCATATTTTCGCACGTTCTTGTGGTGGCC
GGAGCTGACTCAGCTCGGAGTTACCCCTTTCGGCAGAGGCCTGACTTCCT
CTATCTTTGCGACTGCTTGAGACCAGGGGCAGCATTGGTTCTCACCCGCA
GCCGAAAGCGAAATACTGGCGCGTTGCTCTTTCTTTCCCAGGATGTGGAC
TCCCAGCTGTCCACCATTTTTAGCCATATGCACTACGTGGACGACGTTCT
GCCCCTCGCAATGCTTAAGAAAAGTTTACTCTGGCTGTTAAGGGATCACT
CGCCCGAGCTATGGCACTTCTACGACCCATCGAGTCCTGTCAGTTGTATA
GTGCAAGAGGTGGCTAATGAAGCCAAGATTCCTATGGGCAATCCCCGATA
CATCCTCCAGTACACACGCACCGTCAAGACCTCGCGGGAGCTGAGAGCCC
TGCGTCGGGCTAACGCCACCGCTGCGGACTCCATGGCGGAGGTAATCGCA
CAGCATCATCAGATTCCTCAGGAGCTGCCCGCTTCATTTGACTACAAGTG
CCG
BS12652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-PA | 1605 | CG32454-RA | 1..887 | 17..903 | 4410 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-RA | 1835 | CG32454-RA | 44..930 | 17..903 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22729809..22730695 | 17..903 | 4420 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:31:13 has no hits.
BS12652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:00 Download gff for
BS12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:32:16 Download gff for
BS12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 38..930 | 8..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:07 Download gff for
BS12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 38..930 | 8..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:07 Download gff for
BS12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22729803..22730695 | 8..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:32:16 Download gff for
BS12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22722903..22723795 | 8..903 | 99 | | Plus |
BS12652.complete Sequence
1637 bp assembled on 2008-08-14
GenBank Submission: FJ637250
> BS12652.complete
GAAGTTATCAGTCGACATGCTGCGGTTTCTTCGAAATTTTAAGTATTATG
CCTGGCAAGAGGTGCGTCGCGGTTGTTCCGTAGTGGCCCCACCGGATAGG
AGTGATGTGCTTCTGGTGCTGCCAACGGTCTGGCCCTCCGAGCTTACCAA
GAGGATCCGCCCGCTCTCAGTGCCCGACCTGATCGAGAAGTTCTCCTGCG
ATGCCCCTGGCGGACAGTTCGCCACAATGTCCGAGTACCTGCGCAGCGAT
CCACGGCCCGACGGAGTTCTCCTGCCGGATGAAATTGATCTGCACCGAAA
AATGTCCCTGGACGACCTTAATTCTTATATGCACGCGAAGGACGCATTCA
AAGAGCCGCACAGGAAAAACCGCATATTTTCGCACGTTCTTGTGGTGGCC
GGAGCTGACTCAGCTCGGAGTTACCCCTTTCGGCAGAGGCCTGACTTCCT
CTATCTTTGCGACTGCTTGAGACCAGGGGCAGCATTGGTTCTCACCCGCA
GCCGAAAGCGAAATACTGGCGCGTTGCTCTTTCTTTCCCAGGATGTGGAC
TCCCAGCTGTCCACCATTTTTAGCCATATGCACTACGTGGACGACGTTCT
GCCCCTCGCAATGCTTAAGAAAAGTTTACTCTGGCTGTTAAGGGATCACT
CGCCCGAGCTATGGCACTTCTACGACCCATCGAGTCCTGTCAGTTGTATA
GTGCAAGAGGTGGCTAATGAAGCCAAGATTCCTATGGGCAATCCCCGATA
CATCCTCCAGTACACACGCACCGTCAAGACCTCGCGGGAGCTGAGAGCCC
TGCGTCGGGCTAACGCCACCGCTGCGGACTCCATGGCGGAGGTAATCGCA
CAGCATCATCAGATTCCTCAGGAGCTGGCCGCTTCATTTGACTACAAGTG
CCGTTTGCGCCACGCTCGTCCCGACGTGACAAAAACTTCGTGCGGATTGG
ATGGCAATGGGCTGTGGCAGATGGACGCTGGATGTCAGTACGGAGGCTAC
GAGGGGGGACTGGCCAGATGCTGGCCCAGCTCGGGGCGATTCACGCCGCC
CCAGAAAATGATTTATGGTGCGCTGTTGGACATGCGTCGGGATCTGTGCT
CGTTGATACAGTACGCAGGATGTGAGGGTGCCGTCCGCACACCTCTGGAA
CTGCACGCCGCCTATTTAATCCTTCTGGCTCGGCACCTAAGGGAGCTCCG
CGTGTTGCCTAAGGGTGTCAGCAGTGCAGCCGAGACAGTGGAGTTGGCTC
GCAAGTACAACTGCTCCCCAGTCGTGGTCTCGCACGTGGGTCTGGGAAAG
CGAGACACCAGTCGCAGACTCCTTGACTATCCCTTCGCTCCCGGAAACGT
GATGTCGCTGCGGCTGTCAATCTCTATTCCCGATGACTGCTGCCAGGCCT
ACCCCGAGTTCCGGGGCATTCTTTGTCAGCTTGGCGACACCCTGCACGTC
CGGGATGATTACTCCGTGGATCTACTTACCGCCGCCTGCCCCAGCGAGCC
CCAGGACATAGAAGTCTGTCTACCTGCAAGCCGAACCAGATCGCATAGAT
TGCGGAATGACGGTGATCAAAGTGGATCTTGTGACACACGACAATTGCAA
AGCCACGGTGACGGCGACTGAAAGCTTTCTAGACCAT
BS12652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-RA | 1605 | CG32454-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-RA | 1835 | CG32454-RA | 44..1648 | 17..1621 | 8025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22729809..22731413 | 17..1621 | 8025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:09 has no hits.
BS12652.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:39 Download gff for
BS12652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 38..1648 | 8..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:57 Download gff for
BS12652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 44..1647 | 17..1620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:45 Download gff for
BS12652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 44..1647 | 17..1620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:54 Download gff for
BS12652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 44..1647 | 17..1620 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:54 Download gff for
BS12652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22729809..22731412 | 17..1620 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:57 Download gff for
BS12652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22722909..22724512 | 17..1620 | 100 | | Plus |
BS12652.pep Sequence
Translation from 16 to 1620
> BS12652.pep
MLRFLRNFKYYAWQEVRRGCSVVAPPDRSDVLLVLPTVWPSELTKRIRPL
SVPDLIEKFSCDAPGGQFATMSEYLRSDPRPDGVLLPDEIDLHRKMSLDD
LNSYMHAKDAFKEPHRKNRIFSHVLVVAGADSARSYPFRQRPDFLYLCDC
LRPGAALVLTRSRKRNTGALLFLSQDVDSQLSTIFSHMHYVDDVLPLAML
KKSLLWLLRDHSPELWHFYDPSSPVSCIVQEVANEAKIPMGNPRYILQYT
RTVKTSRELRALRRANATAADSMAEVIAQHHQIPQELAASFDYKCRLRHA
RPDVTKTSCGLDGNGLWQMDAGCQYGGYEGGLARCWPSSGRFTPPQKMIY
GALLDMRRDLCSLIQYAGCEGAVRTPLELHAAYLILLARHLRELRVLPKG
VSSAAETVELARKYNCSPVVVSHVGLGKRDTSRRLLDYPFAPGNVMSLRL
SISIPDDCCQAYPEFRGILCQLGDTLHVRDDYSVDLLTAACPSEPQDIEV
CLPASRTRSHRLRNDGDQSGSCDTRQLQSHGDGD*
BS12652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-PA | 534 | CG32454-PA | 1..534 | 1..534 | 2835 | 100 | Plus |
| CG9581-PA | 545 | CG9581-PA | 92..530 | 89..501 | 365 | 28.1 | Plus |
