Clone Sequence Records
BS12653.3prime Sequence
774 bp (711 high quality bases) assembled on 2006-10-13
> BS12653.3prime
ATGGTCTAGAAAGCTTCTATCTAGTGGAGTGTTTGCTTGTGGGCGCCTTT
TCTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGA
ATCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTG
CCAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCC
TCGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCAT
TGCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGC
CCACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCT
ATGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATC
TTCGCGTGATACGGAAACCCGTTTGTCGTTGAGGTGCATCTGGCCAAAGC
TTGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCA
TAAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGC
CAGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACA
GGCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAG
TTGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCAC
CAGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTT
TTAGAATGTCACGTGCGTTTTCGT
BS12653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PD | 1206 | fbl-RD | 449..1206 | 774..17 | 3765 | 99.8 | Minus |
CG5725-PB | 1254 | fbl-RB | 497..1254 | 774..17 | 3765 | 99.8 | Minus |
CG5725-PA | 1260 | fbl-RA | 503..1260 | 774..17 | 3765 | 99.8 | Minus |
CG5725-PC | 1206 | fbl-RC | 449..1206 | 774..17 | 3765 | 99.8 | Minus |
CG5725-PE | 1539 | fbl-RE | 782..1539 | 774..17 | 3765 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 864..1621 | 774..17 | 3775 | 99.9 | Minus |
fbl-RF | 1370 | CG5725-RF | 341..1098 | 774..17 | 3775 | 99.9 | Minus |
fbl-RE | 2386 | CG5725-RE | 898..1655 | 774..17 | 3775 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390885..20391182 | 314..17 | 1490 | 100 | Minus |
3L | 28110227 | 3L | 20390456..20390634 | 628..450 | 895 | 100 | Minus |
3L | 28110227 | 3L | 20390688..20390827 | 451..312 | 685 | 99.3 | Minus |
3L | 28110227 | 3L | 20390268..20390393 | 752..627 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:10:14 has no hits.
BS12653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:00 Download gff for
BS12653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PE | 782..1539 | 17..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:18 Download gff for
BS12653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 898..1660 | 12..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:17:19 Download gff for
BS12653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 898..1660 | 12..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:17:19 Download gff for
BS12653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20390187..20390208 | 753..774 | 100 | -> | Minus |
3L | 20390268..20390393 | 627..752 | 100 | -> | Minus |
3L | 20390458..20390634 | 450..626 | 100 | -> | Minus |
3L | 20390690..20390825 | 314..449 | 99 | -> | Minus |
3L | 20390886..20391187 | 12..313 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:18 Download gff for
BS12653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383287..20383308 | 753..774 | 100 | -> | Minus |
arm_3L | 20383368..20383493 | 627..752 | 100 | -> | Minus |
arm_3L | 20383558..20383734 | 450..626 | 100 | -> | Minus |
arm_3L | 20383790..20383925 | 314..449 | 99 | -> | Minus |
arm_3L | 20383986..20384287 | 12..313 | 99 | | Minus |
BS12653.5prime Sequence
890 bp (749 high quality bases) assembled on 2006-10-13
> BS12653.5prime
GAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCC
TCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAG
GATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAA
CTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACA
ATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAG
ACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGC
CGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCG
AGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAG
CTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCAC
GGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGC
AGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGA
TCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGAT
TTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTAC
TCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGT
GACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTA
CAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGA
TGCACCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAAC
GCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAG
BS12653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PD | 1206 | fbl-RD | 1..874 | 17..890 | 4320 | 99.7 | Plus |
CG5725-PB | 1254 | fbl-RB | 49..922 | 17..890 | 4320 | 99.7 | Plus |
CG5725-PA | 1260 | fbl-RA | 55..928 | 17..890 | 4320 | 99.7 | Plus |
CG5725-PC | 1206 | fbl-RC | 1..874 | 17..890 | 4320 | 99.7 | Plus |
CG5725-PE | 1539 | fbl-RE | 334..1207 | 17..890 | 4320 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 416..1289 | 17..890 | 4340 | 99.8 | Plus |
fbl-RE | 2386 | CG5725-RE | 450..1323 | 17..890 | 4340 | 99.8 | Plus |
fbl-RC | 2093 | CG5725-RC | 157..1030 | 17..890 | 4340 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20389913..20390208 | 191..486 | 1465 | 99.7 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 611..789 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20388671..20388847 | 17..193 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 487..612 | 630 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390790 | 788..890 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:55:25 has no hits.
BS12653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:01 Download gff for
BS12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PE | 326..1207 | 5..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:11 Download gff for
BS12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RC | 155..1030 | 13..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:58 Download gff for
BS12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RC | 155..1030 | 13..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:58 Download gff for
BS12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20388663..20388847 | 5..193 | 97 | -> | Plus |
3L | 20389916..20390208 | 194..486 | 99 | -> | Plus |
3L | 20390268..20390393 | 487..612 | 100 | -> | Plus |
3L | 20390458..20390634 | 613..789 | 100 | -> | Plus |
3L | 20390690..20390790 | 790..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:11 Download gff for
BS12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20381763..20381947 | 5..193 | 97 | -> | Plus |
arm_3L | 20383016..20383308 | 194..486 | 99 | -> | Plus |
arm_3L | 20383368..20383493 | 487..612 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 613..789 | 100 | -> | Plus |
arm_3L | 20383790..20383890 | 790..890 | 99 | | Plus |
BS12653.complete Sequence
1238 bp assembled on 2006-11-01
GenBank Submission: FJ637251
> BS12653.complete
GAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCC
TCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAG
GATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAA
CTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACA
ATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAG
ACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGC
CGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCG
AGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAG
CTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCAC
GGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGC
AGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGA
TCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGAT
TTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTAC
TCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGT
GACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTA
CAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGA
TGCACCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAAC
GCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGATGTG
CGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTTCTGC
GAGTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTTCTGG
TCCAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACTTTGG
GGCTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCCCTTA
ACGACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAGCGAA
GCAGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGCCCAC
AAGCAAACACTCCACTAGATAGAAGCTTTCTAGACCAT
BS12653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 1287 | CG5725-PG | 82..1287 | 17..1222 | 6000 | 99.8 | Plus |
fbl-RE | 1539 | CG5725-PE | 334..1539 | 17..1222 | 6000 | 99.8 | Plus |
fbl-RC | 1206 | CG5725-PC | 1..1206 | 17..1222 | 6000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 416..1621 | 17..1222 | 6000 | 99.8 | Plus |
fbl-RE | 2386 | CG5725-RE | 450..1655 | 17..1222 | 6000 | 99.8 | Plus |
fbl-RC | 2093 | CG5725-RC | 157..1362 | 17..1222 | 6000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390885..20391182 | 925..1222 | 1490 | 100 | Plus |
3L | 28110227 | 3L | 20389913..20390208 | 191..486 | 1465 | 99.7 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 611..789 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20388671..20388847 | 17..193 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390827 | 788..927 | 685 | 99.3 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 487..612 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:30:36 has no hits.
BS12653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:36 Download gff for
BS12653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 49..1260 | 10..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:58 Download gff for
BS12653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 383..1599 | 10..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:06 Download gff for
BS12653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RC | 157..1362 | 17..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:36 Download gff for
BS12653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 383..1599 | 10..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:16 Download gff for
BS12653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RC | 157..1362 | 17..1222 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:16 Download gff for
BS12653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20388671..20388847 | 17..193 | 100 | -> | Plus |
3L | 20389916..20390208 | 194..486 | 99 | -> | Plus |
3L | 20390268..20390393 | 487..612 | 100 | -> | Plus |
3L | 20390458..20390634 | 613..789 | 100 | -> | Plus |
3L | 20390690..20390825 | 790..925 | 99 | -> | Plus |
3L | 20390886..20391182 | 926..1222 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:06 Download gff for
BS12653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20381771..20381947 | 17..193 | 100 | -> | Plus |
arm_3L | 20383016..20383308 | 194..486 | 99 | -> | Plus |
arm_3L | 20383368..20383493 | 487..612 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 613..789 | 100 | -> | Plus |
arm_3L | 20383790..20383925 | 790..925 | 99 | -> | Plus |
arm_3L | 20383986..20384282 | 926..1222 | 100 | | Plus |
BS12653.pep Sequence
Translation from 16 to 1221
> BS12653.pep
MPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGILRNIRRYLTKNSAYGK
TGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGNFLSLAKQKGMAELVTT
VCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIKGILFADLHNRTECYYY
ENARDILKSEKQQFNFSQPFPFILVNVGSGVSILAVYGPDNYKRISGTSL
GGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVDKLVKDIYGGDYNRFGL
PGDLVASSFGQMHLNDKRVSVSREDLANATLVTITNNIGSIARMCALNEK
IDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMKGLFLEHEGYFGALGCL
LQFNGELAAALNDGVEHSIHTESDSASEAAQTSSTADEPPEKAPTSKHST
R*
BS12653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-PC | 401 | CG5725-PC | 1..401 | 1..401 | 2093 | 100 | Plus |
fbl-PD | 401 | CG5725-PD | 1..401 | 1..401 | 2093 | 100 | Plus |
fbl-PB | 417 | CG5725-PB | 17..417 | 1..401 | 2093 | 100 | Plus |
fbl-PA | 419 | CG5725-PA | 19..419 | 1..401 | 2093 | 100 | Plus |
fbl-PG | 428 | CG5725-PG | 28..428 | 1..401 | 2093 | 100 | Plus |