Clone BS12653 Report

Search the DGRC for BS12653

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptfbl-RC
Protein status:BS12653.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12653.3prime Sequence

774 bp (711 high quality bases) assembled on 2006-10-13

> BS12653.3prime
ATGGTCTAGAAAGCTTCTATCTAGTGGAGTGTTTGCTTGTGGGCGCCTTT
TCTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGA
ATCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTG
CCAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCC
TCGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCAT
TGCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGC
CCACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCT
ATGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATC
TTCGCGTGATACGGAAACCCGTTTGTCGTTGAGGTGCATCTGGCCAAAGC
TTGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCA
TAAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGC
CAGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACA
GGCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAG
TTGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCAC
CAGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTT
TTAGAATGTCACGTGCGTTTTCGT

BS12653.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PD 1206 fbl-RD 449..1206 774..17 3765 99.8 Minus
CG5725-PB 1254 fbl-RB 497..1254 774..17 3765 99.8 Minus
CG5725-PA 1260 fbl-RA 503..1260 774..17 3765 99.8 Minus
CG5725-PC 1206 fbl-RC 449..1206 774..17 3765 99.8 Minus
CG5725-PE 1539 fbl-RE 782..1539 774..17 3765 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 864..1621 774..17 3775 99.9 Minus
fbl-RF 1370 CG5725-RF 341..1098 774..17 3775 99.9 Minus
fbl-RE 2386 CG5725-RE 898..1655 774..17 3775 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391182 314..17 1490 100 Minus
3L 28110227 3L 20390456..20390634 628..450 895 100 Minus
3L 28110227 3L 20390688..20390827 451..312 685 99.3 Minus
3L 28110227 3L 20390268..20390393 752..627 630 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:10:14 has no hits.

BS12653.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:00 Download gff for BS12653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PE 782..1539 17..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:18 Download gff for BS12653.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 898..1660 12..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:17:19 Download gff for BS12653.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 898..1660 12..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:17:19 Download gff for BS12653.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20390187..20390208 753..774 100 -> Minus
3L 20390268..20390393 627..752 100 -> Minus
3L 20390458..20390634 450..626 100 -> Minus
3L 20390690..20390825 314..449 99 -> Minus
3L 20390886..20391187 12..313 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:18 Download gff for BS12653.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383287..20383308 753..774 100 -> Minus
arm_3L 20383368..20383493 627..752 100 -> Minus
arm_3L 20383558..20383734 450..626 100 -> Minus
arm_3L 20383790..20383925 314..449 99 -> Minus
arm_3L 20383986..20384287 12..313 99   Minus

BS12653.5prime Sequence

890 bp (749 high quality bases) assembled on 2006-10-13

> BS12653.5prime
GAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCC
TCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAG
GATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAA
CTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACA
ATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAG
ACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGC
CGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCG
AGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAG
CTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCAC
GGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGC
AGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGA
TCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGAT
TTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTAC
TCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGT
GACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTA
CAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGA
TGCACCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAAC
GCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAG

BS12653.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PD 1206 fbl-RD 1..874 17..890 4320 99.7 Plus
CG5725-PB 1254 fbl-RB 49..922 17..890 4320 99.7 Plus
CG5725-PA 1260 fbl-RA 55..928 17..890 4320 99.7 Plus
CG5725-PC 1206 fbl-RC 1..874 17..890 4320 99.7 Plus
CG5725-PE 1539 fbl-RE 334..1207 17..890 4320 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 416..1289 17..890 4340 99.8 Plus
fbl-RE 2386 CG5725-RE 450..1323 17..890 4340 99.8 Plus
fbl-RC 2093 CG5725-RC 157..1030 17..890 4340 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20389913..20390208 191..486 1465 99.7 Plus
3L 28110227 3L 20390456..20390634 611..789 895 100 Plus
3L 28110227 3L 20388671..20388847 17..193 885 100 Plus
3L 28110227 3L 20390268..20390393 487..612 630 100 Plus
3L 28110227 3L 20390688..20390790 788..890 500 99 Plus
Blast to na_te.dros performed on 2015-02-12 03:55:25 has no hits.

BS12653.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:01 Download gff for BS12653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PE 326..1207 5..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:11 Download gff for BS12653.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RC 155..1030 13..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:58 Download gff for BS12653.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RC 155..1030 13..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:58 Download gff for BS12653.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20388663..20388847 5..193 97 -> Plus
3L 20389916..20390208 194..486 99 -> Plus
3L 20390268..20390393 487..612 100 -> Plus
3L 20390458..20390634 613..789 100 -> Plus
3L 20390690..20390790 790..890 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:11 Download gff for BS12653.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20381763..20381947 5..193 97 -> Plus
arm_3L 20383016..20383308 194..486 99 -> Plus
arm_3L 20383368..20383493 487..612 100 -> Plus
arm_3L 20383558..20383734 613..789 100 -> Plus
arm_3L 20383790..20383890 790..890 99   Plus

BS12653.complete Sequence

1238 bp assembled on 2006-11-01

GenBank Submission: FJ637251

> BS12653.complete
GAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCC
TCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAG
GATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAA
CTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACA
ATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAG
ACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGC
CGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCG
AGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAG
CTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCAC
GGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGC
AGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGA
TCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGAT
TTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTAC
TCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGT
GACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTA
CAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGA
TGCACCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAAC
GCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGATGTG
CGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTTCTGC
GAGTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTTCTGG
TCCAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACTTTGG
GGCTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCCCTTA
ACGACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAGCGAA
GCAGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGCCCAC
AAGCAAACACTCCACTAGATAGAAGCTTTCTAGACCAT

BS12653.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 1287 CG5725-PG 82..1287 17..1222 6000 99.8 Plus
fbl-RE 1539 CG5725-PE 334..1539 17..1222 6000 99.8 Plus
fbl-RC 1206 CG5725-PC 1..1206 17..1222 6000 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 416..1621 17..1222 6000 99.8 Plus
fbl-RE 2386 CG5725-RE 450..1655 17..1222 6000 99.8 Plus
fbl-RC 2093 CG5725-RC 157..1362 17..1222 6000 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391182 925..1222 1490 100 Plus
3L 28110227 3L 20389913..20390208 191..486 1465 99.7 Plus
3L 28110227 3L 20390456..20390634 611..789 895 100 Plus
3L 28110227 3L 20388671..20388847 17..193 885 100 Plus
3L 28110227 3L 20390688..20390827 788..927 685 99.3 Plus
3L 28110227 3L 20390268..20390393 487..612 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:30:36 has no hits.

BS12653.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:36 Download gff for BS12653.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 49..1260 10..1222 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:58 Download gff for BS12653.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 383..1599 10..1227 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:06 Download gff for BS12653.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RC 157..1362 17..1222 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:36 Download gff for BS12653.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 383..1599 10..1227 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:16 Download gff for BS12653.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RC 157..1362 17..1222 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:16 Download gff for BS12653.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20388671..20388847 17..193 100 -> Plus
3L 20389916..20390208 194..486 99 -> Plus
3L 20390268..20390393 487..612 100 -> Plus
3L 20390458..20390634 613..789 100 -> Plus
3L 20390690..20390825 790..925 99 -> Plus
3L 20390886..20391182 926..1222 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:06 Download gff for BS12653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20381771..20381947 17..193 100 -> Plus
arm_3L 20383016..20383308 194..486 99 -> Plus
arm_3L 20383368..20383493 487..612 100 -> Plus
arm_3L 20383558..20383734 613..789 100 -> Plus
arm_3L 20383790..20383925 790..925 99 -> Plus
arm_3L 20383986..20384282 926..1222 100   Plus

BS12653.pep Sequence

Translation from 16 to 1221

> BS12653.pep
MPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGILRNIRRYLTKNSAYGK
TGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGNFLSLAKQKGMAELVTT
VCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIKGILFADLHNRTECYYY
ENARDILKSEKQQFNFSQPFPFILVNVGSGVSILAVYGPDNYKRISGTSL
GGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVDKLVKDIYGGDYNRFGL
PGDLVASSFGQMHLNDKRVSVSREDLANATLVTITNNIGSIARMCALNEK
IDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMKGLFLEHEGYFGALGCL
LQFNGELAAALNDGVEHSIHTESDSASEAAQTSSTADEPPEKAPTSKHST
R*

BS12653.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-PC 401 CG5725-PC 1..401 1..401 2093 100 Plus
fbl-PD 401 CG5725-PD 1..401 1..401 2093 100 Plus
fbl-PB 417 CG5725-PB 17..417 1..401 2093 100 Plus
fbl-PA 419 CG5725-PA 19..419 1..401 2093 100 Plus
fbl-PG 428 CG5725-PG 28..428 1..401 2093 100 Plus