Clone Sequence Records
BS12654.3prime Sequence
847 bp (721 high quality bases) assembled on 2006-10-13
> BS12654.3prime
ATGGTCTAGAAAGCTTTTATTCATGGAATGATATCTGGGAAGCGCTCTTG
GGTTCCAACGGATCCGCAGCGCTACCATTGTTTCGGATCATGGACTGATG
GGGCGAATCCAATTGGGACTGCGATTGCGACTGTGATTCGTTCAAACCGG
TAGCATCTGAACCCTCCTTATTCTCCATCGCCCGCAACACGGAGTCCTTG
TAGAACGCGGTCTCATCGATCTTGCGCCGGTACAGTCCGGTCGGGTGCTC
CGGATCGAAAACAATGTCCGGACGTATATCGCTGTCGGTGACCAGGACCC
GAGCACCGGGAATCGGCAGGAACTTGAACAGACGCTTGCGCAACTTGGGC
ATGTAGGTGACCCTCTGGTGATCGGGCACCTGGGTCAGTCGACTGGGAAT
CACCTCCGGCAGCTCAATGGGATAGTCCATCAGTCGCCTCTCCGGCGGTA
GCTTCTGCTTGATGGCCTCCAGTTGGCGTGCGGTCAGCTGCATCGGTCGT
TCGCCATCCTTCCATCGCTCCTGGCCACTATTGAAGGCGATCTTCTTGTT
GTTCTTCAATTGCTTGCGGATCACCCGCTTGGCTGCACAGTTGTAGGTGA
TCTTGGGCACGTACGGAGGAACCGGATACGCCCGAATGGAAATGGGATGT
CGCTGCGGCTGGCTCAGCATGTTAATGTACTTGGAATCGGCATACATGCT
TATCGGCTTGCCCTGCTTTTTGGAAGAAGTGGGTTTCTTGGTGGGCTTGG
GTCTATCTTTGCGTCCCATTAGGAAGACATGACGATGGCCTTTGGCCCTC
GACATGGCGCCAATCGGGCTCACAGAGTCGCTTTCGACTGATCCTTT
BS12654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-PB | 1677 | CG13870-RB | 848..1677 | 847..17 | 4090 | 99.7 | Minus |
CG13870-PA | 1707 | CG13870-RA | 878..1707 | 847..17 | 4090 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-RA | 1811 | CG13870-RA | 943..1774 | 847..15 | 4125 | 99.8 | Minus |
CG13870-RB | 1921 | CG13870-RB | 913..1744 | 847..15 | 4125 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20345010..20345841 | 847..15 | 4100 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:41:24 has no hits.
BS12654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:01 Download gff for
BS12654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-PA | 878..1707 | 17..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:38:33 Download gff for
BS12654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 913..1744 | 15..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:38 Download gff for
BS12654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 913..1744 | 15..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:38 Download gff for
BS12654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20345010..20345841 | 15..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:38:33 Download gff for
BS12654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16232515..16233346 | 15..847 | 99 | | Minus |
BS12654.5prime Sequence
927 bp (827 high quality bases) assembled on 2006-10-13
> BS12654.5prime
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATC
ACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCG
GAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTG
GCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGAC
TGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGT
CGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGA
AATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTT
CAAATGCCCGCGATCGTCGACCGACCACACACGCCATGATTTCCAATCTG
TCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATAC
AAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCAC
GCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCC
AATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTA
CTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTG
TGCCGGGACTACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGC
GCCTGCCATTTGAAAGGATCAGTCGAAAGCGACTCTGTGAGCCGGATTGG
CGCCATGTCGAGGGCCAAGGGCATCGT
BS12654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-PB | 1677 | CG13870-RB | 1..912 | 17..927 | 4495 | 99.7 | Plus |
CG13870-PA | 1707 | CG13870-RA | 175..942 | 161..927 | 3775 | 99.7 | Plus |
CG13870-PA | 1707 | CG13870-RA | 1..145 | 17..161 | 725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-RB | 1921 | CG13870-RB | 64..977 | 15..927 | 4530 | 99.8 | Plus |
CG13870-RA | 1811 | CG13870-RA | 240..1007 | 161..927 | 3800 | 99.7 | Plus |
CG13870-RA | 1811 | CG13870-RA | 64..210 | 15..161 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20344650..20345074 | 504..927 | 2060 | 99.5 | Plus |
2R | 25286936 | 2R | 20344195..20344537 | 161..503 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 20343908..20343998 | 15..105 | 455 | 100 | Plus |
2R | 25286936 | 2R | 20344056..20344112 | 105..161 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:07:16 has no hits.
BS12654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:02 Download gff for
BS12654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-PB | 1..912 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:06:01 Download gff for
BS12654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 56..977 | 6..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:08 Download gff for
BS12654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 56..977 | 6..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:08 Download gff for
BS12654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20343900..20343997 | 6..104 | 95 | -> | Plus |
2R | 20344056..20344112 | 105..161 | 100 | -> | Plus |
2R | 20344196..20344537 | 162..503 | 100 | -> | Plus |
2R | 20344650..20345074 | 504..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:06:01 Download gff for
BS12654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16231405..16231502 | 6..104 | 95 | -> | Plus |
arm_2R | 16231561..16231617 | 105..161 | 100 | -> | Plus |
arm_2R | 16231701..16232042 | 162..503 | 100 | -> | Plus |
arm_2R | 16232155..16232579 | 504..927 | 99 | | Plus |
BS12654.complete Sequence
1709 bp assembled on 2008-08-14
GenBank Submission: FJ637252
> BS12654.complete
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATC
ACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCG
GAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTG
GCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGAC
TGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGT
CGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGA
AATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTT
CAAATGCCCGCGATCGTCGACCGACCACACACGCCATGATTTCCAATCTG
TCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATAC
AAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCAC
GCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCC
AATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTA
CTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTG
TGCCGGGACTACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGC
CGCCTGCCATTTGAAAGGATCAGTCGAAAGCGACTCTGTGAGCCGGATTG
GCGCCATGTCGAGGGCCAAGGGCATCGTCATGTCTTCCTAATGGGACGCA
AAGATAGACCCAAGCCCACCAAGAAACCCACTTCTTCCAAAAAGCAGGGC
AAGCCGATAAGCATGTATGCCGATTCCAAGTACATTAACATGCTGAGCCA
GCCGCAGCGACATCCCATTTCCATTCGGGCGTATCCGGTTCCTCCGTACG
TGCCCAAGATCACCTACAACTGTGCAGCCAAGCGGGTGATCCGCAAGCAA
TTGAAGAACAACAAGAAGATCGCCTTCAATAGTGGCCAGGAGCGATGGAA
GGATGGCGAACGACCGATGCAGCTGACCGCACGCCAACTGGAGGCCATCA
AGCAGAAGCTACCGCCGGAGAGGCGACTGATGGACTATCCCATTGAGCTG
CCGGAGGTGATTCCCAGTCGACTGACCCAGGTGCCCGATCACCAGAGGGT
CACCTACATGCCCAAGTTGCGCAAGCGTCTGTTCAAGTTCCTGCCGATTC
CCGGTGCTCGGGTCCTGGTCACCGACAGCGATATACGTCCGGACATTGTT
TTCGATCCGGAGCACCCGACCGGACTGTACCGGCGCAAGATCGATGAGAC
CGCGTTCTACAAGGACTCCGTGTTGCGGGCGATGGAGAATAAGGAGGGTT
CAGATGCTACCGGTTTGAACGAATCACAGTCGCAATCGCAGTCCCAATTG
GATTCGCCCCATCAGTCCATGATCCGAAACAATGGTAGCGCTGCGGATCC
GTTGGAACCCAAGAGCGCTTCCCAGATATCATTCCATGAATAAAAGCTTT
CTAGACCAT
BS12654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-RB | 1677 | CG13870-PB | 1..1677 | 17..1693 | 8370 | 99.9 | Plus |
CG13870-RA | 1707 | CG13870-PA | 175..1707 | 161..1693 | 7650 | 99.9 | Plus |
CG13870-RA | 1707 | CG13870-PA | 1..145 | 17..161 | 725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-RB | 1921 | CG13870-RB | 64..1744 | 15..1695 | 8390 | 99.9 | Plus |
CG13870-RA | 1811 | CG13870-RA | 240..1774 | 161..1695 | 7660 | 99.9 | Plus |
CG13870-RA | 1811 | CG13870-RA | 64..210 | 15..161 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20344650..20345841 | 504..1695 | 5945 | 99.9 | Plus |
2R | 25286936 | 2R | 20344195..20344537 | 161..503 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 20343908..20343998 | 15..105 | 455 | 100 | Plus |
2R | 25286936 | 2R | 20344056..20344112 | 105..161 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:50:09 has no hits.
BS12654.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:17 Download gff for
BS12654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 56..1744 | 6..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:42 Download gff for
BS12654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 66..1740 | 17..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:59 Download gff for
BS12654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 66..1740 | 17..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:09 Download gff for
BS12654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 66..1740 | 17..1691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:09 Download gff for
BS12654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20343910..20343997 | 17..104 | 100 | -> | Plus |
2R | 20344056..20344112 | 105..161 | 100 | -> | Plus |
2R | 20344196..20344537 | 162..503 | 100 | -> | Plus |
2R | 20344650..20345837 | 504..1691 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:42 Download gff for
BS12654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16231415..16231502 | 17..104 | 100 | -> | Plus |
arm_2R | 16231561..16231617 | 105..161 | 100 | -> | Plus |
arm_2R | 16231701..16232042 | 162..503 | 100 | -> | Plus |
arm_2R | 16232155..16233342 | 504..1691 | 99 | | Plus |
BS12654.pep Sequence
Translation from 16 to 1692
> BS12654.pep
MEKSTLKINNEDRQNFVATRMSLPLFMVSRNRIRKENLPRVEKQFKLAEN
RREAFSKATFDHYRHITGFDKTPKNPYPERRRLHIDRSMTKWRGWQLPPN
HYGVPPEPYLRLKGTKGSVFAKPHTNHSRVSIKPPPYHFYELPAEIERLF
KRPNLQKGIFLSNARDRRPTTHAMISNLSGCWRNPKDAGPCDTHTNIFEL
AANAVPVTKAPRPNPHLFLRHSCVPTKPNRLIRRHISMEPAPGRYCTSYP
NVCPCPSGKTSVPGLQLMIDDQKRLKFRRLPFERISRKRLCEPDWRHVEG
QGHRHVFLMGRKDRPKPTKKPTSSKKQGKPISMYADSKYINMLSQPQRHP
ISIRAYPVPPYVPKITYNCAAKRVIRKQLKNNKKIAFNSGQERWKDGERP
MQLTARQLEAIKQKLPPERRLMDYPIELPEVIPSRLTQVPDHQRVTYMPK
LRKRLFKFLPIPGARVLVTDSDIRPDIVFDPEHPTGLYRRKIDETAFYKD
SVLRAMENKEGSDATGLNESQSQSQSQLDSPHQSMIRNNGSAADPLEPKS
ASQISFHE*
BS12654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-PB | 558 | CG13870-PB | 1..558 | 1..558 | 2999 | 100 | Plus |
CG13870-PA | 568 | CG13870-PA | 1..568 | 1..558 | 2978 | 98.2 | Plus |