Clone BS12654 Report

Search the DGRC for BS12654

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG13870-RB
Protein status:BS12654.pep: full length peptide match
Sequenced Size:1709

Clone Sequence Records

BS12654.3prime Sequence

847 bp (721 high quality bases) assembled on 2006-10-13

> BS12654.3prime
ATGGTCTAGAAAGCTTTTATTCATGGAATGATATCTGGGAAGCGCTCTTG
GGTTCCAACGGATCCGCAGCGCTACCATTGTTTCGGATCATGGACTGATG
GGGCGAATCCAATTGGGACTGCGATTGCGACTGTGATTCGTTCAAACCGG
TAGCATCTGAACCCTCCTTATTCTCCATCGCCCGCAACACGGAGTCCTTG
TAGAACGCGGTCTCATCGATCTTGCGCCGGTACAGTCCGGTCGGGTGCTC
CGGATCGAAAACAATGTCCGGACGTATATCGCTGTCGGTGACCAGGACCC
GAGCACCGGGAATCGGCAGGAACTTGAACAGACGCTTGCGCAACTTGGGC
ATGTAGGTGACCCTCTGGTGATCGGGCACCTGGGTCAGTCGACTGGGAAT
CACCTCCGGCAGCTCAATGGGATAGTCCATCAGTCGCCTCTCCGGCGGTA
GCTTCTGCTTGATGGCCTCCAGTTGGCGTGCGGTCAGCTGCATCGGTCGT
TCGCCATCCTTCCATCGCTCCTGGCCACTATTGAAGGCGATCTTCTTGTT
GTTCTTCAATTGCTTGCGGATCACCCGCTTGGCTGCACAGTTGTAGGTGA
TCTTGGGCACGTACGGAGGAACCGGATACGCCCGAATGGAAATGGGATGT
CGCTGCGGCTGGCTCAGCATGTTAATGTACTTGGAATCGGCATACATGCT
TATCGGCTTGCCCTGCTTTTTGGAAGAAGTGGGTTTCTTGGTGGGCTTGG
GTCTATCTTTGCGTCCCATTAGGAAGACATGACGATGGCCTTTGGCCCTC
GACATGGCGCCAATCGGGCTCACAGAGTCGCTTTCGACTGATCCTTT

BS12654.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-PB 1677 CG13870-RB 848..1677 847..17 4090 99.7 Minus
CG13870-PA 1707 CG13870-RA 878..1707 847..17 4090 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RA 1811 CG13870-RA 943..1774 847..15 4125 99.8 Minus
CG13870-RB 1921 CG13870-RB 913..1744 847..15 4125 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20345010..20345841 847..15 4100 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 07:41:24 has no hits.

BS12654.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:01 Download gff for BS12654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-PA 878..1707 17..847 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:38:33 Download gff for BS12654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 913..1744 15..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:38 Download gff for BS12654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 913..1744 15..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:38 Download gff for BS12654.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20345010..20345841 15..847 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:38:33 Download gff for BS12654.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16232515..16233346 15..847 99   Minus

BS12654.5prime Sequence

927 bp (827 high quality bases) assembled on 2006-10-13

> BS12654.5prime
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATC
ACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCG
GAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTG
GCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGAC
TGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGT
CGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGA
AATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTT
CAAATGCCCGCGATCGTCGACCGACCACACACGCCATGATTTCCAATCTG
TCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATAC
AAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCAC
GCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCC
AATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTA
CTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTG
TGCCGGGACTACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGC
GCCTGCCATTTGAAAGGATCAGTCGAAAGCGACTCTGTGAGCCGGATTGG
CGCCATGTCGAGGGCCAAGGGCATCGT

BS12654.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-PB 1677 CG13870-RB 1..912 17..927 4495 99.7 Plus
CG13870-PA 1707 CG13870-RA 175..942 161..927 3775 99.7 Plus
CG13870-PA 1707 CG13870-RA 1..145 17..161 725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RB 1921 CG13870-RB 64..977 15..927 4530 99.8 Plus
CG13870-RA 1811 CG13870-RA 240..1007 161..927 3800 99.7 Plus
CG13870-RA 1811 CG13870-RA 64..210 15..161 735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20344650..20345074 504..927 2060 99.5 Plus
2R 25286936 2R 20344195..20344537 161..503 1715 100 Plus
2R 25286936 2R 20343908..20343998 15..105 455 100 Plus
2R 25286936 2R 20344056..20344112 105..161 285 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:07:16 has no hits.

BS12654.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:02 Download gff for BS12654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-PB 1..912 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:06:01 Download gff for BS12654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 56..977 6..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:08 Download gff for BS12654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 56..977 6..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:08 Download gff for BS12654.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20343900..20343997 6..104 95 -> Plus
2R 20344056..20344112 105..161 100 -> Plus
2R 20344196..20344537 162..503 100 -> Plus
2R 20344650..20345074 504..927 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:06:01 Download gff for BS12654.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16231405..16231502 6..104 95 -> Plus
arm_2R 16231561..16231617 105..161 100 -> Plus
arm_2R 16231701..16232042 162..503 100 -> Plus
arm_2R 16232155..16232579 504..927 99   Plus

BS12654.complete Sequence

1709 bp assembled on 2008-08-14

GenBank Submission: FJ637252

> BS12654.complete
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATC
ACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCG
GAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTG
GCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGAC
TGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGT
CGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGA
AATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTT
CAAATGCCCGCGATCGTCGACCGACCACACACGCCATGATTTCCAATCTG
TCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATAC
AAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCAC
GCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCC
AATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTA
CTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTG
TGCCGGGACTACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGC
CGCCTGCCATTTGAAAGGATCAGTCGAAAGCGACTCTGTGAGCCGGATTG
GCGCCATGTCGAGGGCCAAGGGCATCGTCATGTCTTCCTAATGGGACGCA
AAGATAGACCCAAGCCCACCAAGAAACCCACTTCTTCCAAAAAGCAGGGC
AAGCCGATAAGCATGTATGCCGATTCCAAGTACATTAACATGCTGAGCCA
GCCGCAGCGACATCCCATTTCCATTCGGGCGTATCCGGTTCCTCCGTACG
TGCCCAAGATCACCTACAACTGTGCAGCCAAGCGGGTGATCCGCAAGCAA
TTGAAGAACAACAAGAAGATCGCCTTCAATAGTGGCCAGGAGCGATGGAA
GGATGGCGAACGACCGATGCAGCTGACCGCACGCCAACTGGAGGCCATCA
AGCAGAAGCTACCGCCGGAGAGGCGACTGATGGACTATCCCATTGAGCTG
CCGGAGGTGATTCCCAGTCGACTGACCCAGGTGCCCGATCACCAGAGGGT
CACCTACATGCCCAAGTTGCGCAAGCGTCTGTTCAAGTTCCTGCCGATTC
CCGGTGCTCGGGTCCTGGTCACCGACAGCGATATACGTCCGGACATTGTT
TTCGATCCGGAGCACCCGACCGGACTGTACCGGCGCAAGATCGATGAGAC
CGCGTTCTACAAGGACTCCGTGTTGCGGGCGATGGAGAATAAGGAGGGTT
CAGATGCTACCGGTTTGAACGAATCACAGTCGCAATCGCAGTCCCAATTG
GATTCGCCCCATCAGTCCATGATCCGAAACAATGGTAGCGCTGCGGATCC
GTTGGAACCCAAGAGCGCTTCCCAGATATCATTCCATGAATAAAAGCTTT
CTAGACCAT

BS12654.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RB 1677 CG13870-PB 1..1677 17..1693 8370 99.9 Plus
CG13870-RA 1707 CG13870-PA 175..1707 161..1693 7650 99.9 Plus
CG13870-RA 1707 CG13870-PA 1..145 17..161 725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RB 1921 CG13870-RB 64..1744 15..1695 8390 99.9 Plus
CG13870-RA 1811 CG13870-RA 240..1774 161..1695 7660 99.9 Plus
CG13870-RA 1811 CG13870-RA 64..210 15..161 735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20344650..20345841 504..1695 5945 99.9 Plus
2R 25286936 2R 20344195..20344537 161..503 1715 100 Plus
2R 25286936 2R 20343908..20343998 15..105 455 100 Plus
2R 25286936 2R 20344056..20344112 105..161 285 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:50:09 has no hits.

BS12654.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:17 Download gff for BS12654.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 56..1744 6..1695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:42 Download gff for BS12654.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 66..1740 17..1691 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:59 Download gff for BS12654.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 66..1740 17..1691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:09 Download gff for BS12654.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 66..1740 17..1691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:09 Download gff for BS12654.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20343910..20343997 17..104 100 -> Plus
2R 20344056..20344112 105..161 100 -> Plus
2R 20344196..20344537 162..503 100 -> Plus
2R 20344650..20345837 504..1691 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:42 Download gff for BS12654.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16231415..16231502 17..104 100 -> Plus
arm_2R 16231561..16231617 105..161 100 -> Plus
arm_2R 16231701..16232042 162..503 100 -> Plus
arm_2R 16232155..16233342 504..1691 99   Plus

BS12654.pep Sequence

Translation from 16 to 1692

> BS12654.pep
MEKSTLKINNEDRQNFVATRMSLPLFMVSRNRIRKENLPRVEKQFKLAEN
RREAFSKATFDHYRHITGFDKTPKNPYPERRRLHIDRSMTKWRGWQLPPN
HYGVPPEPYLRLKGTKGSVFAKPHTNHSRVSIKPPPYHFYELPAEIERLF
KRPNLQKGIFLSNARDRRPTTHAMISNLSGCWRNPKDAGPCDTHTNIFEL
AANAVPVTKAPRPNPHLFLRHSCVPTKPNRLIRRHISMEPAPGRYCTSYP
NVCPCPSGKTSVPGLQLMIDDQKRLKFRRLPFERISRKRLCEPDWRHVEG
QGHRHVFLMGRKDRPKPTKKPTSSKKQGKPISMYADSKYINMLSQPQRHP
ISIRAYPVPPYVPKITYNCAAKRVIRKQLKNNKKIAFNSGQERWKDGERP
MQLTARQLEAIKQKLPPERRLMDYPIELPEVIPSRLTQVPDHQRVTYMPK
LRKRLFKFLPIPGARVLVTDSDIRPDIVFDPEHPTGLYRRKIDETAFYKD
SVLRAMENKEGSDATGLNESQSQSQSQLDSPHQSMIRNNGSAADPLEPKS
ASQISFHE*

BS12654.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-PB 558 CG13870-PB 1..558 1..558 2999 100 Plus
CG13870-PA 568 CG13870-PA 1..568 1..558 2978 98.2 Plus