Clone Sequence Records
BS12655.3prime Sequence
735 bp (652 high quality bases) assembled on 2006-10-13
> BS12655.3prime
ATGGTCTAGAAAGCTTTTAGTTTTCATCCTCTTCCTCGAAATCGTCGTCA
TCCGACTCGGAGGCCTCATCCATGTCGTCGCTGATGTAGGTGCTATTGCA
CTGCCCACCATCATCGTAGTCATAGTCGTTTTCATCACCGACATCCTCTT
CTAAATTATCCTCGGCATCCTCGCCGACTGCATAGCTCTCTGCTGCGAAG
TGGTTCTGCTCCAGGGTCAGGGGCTCCATTGGCATGGTGCCCACAGCCAC
ATGGTCGCCGTTTCCCAAATCGTGTTGCAAAAAGCCTGGCGGGGATTCGA
GCGCCTTGCCCGAAGGTCCAGGGGACTTTGAGAGCGCTGCTGTCGCCGGT
TTTTGGCTGTCCTCCGTTTTCCGAGGGCTCTCCTCCCCGGCTGTATTGCG
GTTCCTGTGGGCAGCACTTGGCTCCTTGGTGGTGCTGGAACCCTGAGCCC
GCGGCAGAAGCAGCGGCATTGTATCCGGCTCGATGGTTTTCTCATAGTCG
GTAAAGTTAAACAGCGGCGGCAAGCTCCTGCCGTTGGGCAACTGCTGGTG
TGGATCCTGACGAAGTTCGTCGAAGAACGGATGGGCACAGCCCATCAACG
GAGAAACCCTGGCATTGGGCGAGTATATCAGCATCTTGGAGACCAGATCT
ATGGCCTCCGCCGGTGTGCGAATCCTGAACACCTTGGACCAGGGGTGCGG
CTTCAGTTCCGGCAACTTGAACTGCTTGTAATGCG
BS12655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31003-PA | 1506 | gskt-RA | 788..1506 | 735..17 | 3545 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1772 | CG31003-RA | 923..1642 | 735..16 | 3570 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31373349..31374068 | 735..16 | 3570 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:59:59 has no hits.
BS12655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:02 Download gff for
BS12655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31003-PA | 788..1506 | 17..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:47 Download gff for
BS12655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 923..1650 | 8..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:44 Download gff for
BS12655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 923..1650 | 8..735 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:44 Download gff for
BS12655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31373349..31374076 | 8..735 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:47 Download gff for
BS12655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27199071..27199798 | 8..735 | 99 | | Minus |
BS12655.5prime Sequence
879 bp (770 high quality bases) assembled on 2006-10-13
> BS12655.5prime
GAAGTTATCAGTCGACATGGCTTCCCAGAGTAAGAACAGTGGGTTGACCA
ACAAGGTGACCACGGTGGTGGCCACCAATGCCTTCGGCGCTGATGTGATG
AGCGAGATCAGCTACACGGACGCGAAAGTTGTGGGCAATGGCAGCTTCGG
CGTGGTCTTCCAGGCCAAAATGGTGCCCAGCAACGAAATGGTGGCCATAA
AGAAGGTCCTGCAGGATCGGCGCTTCAAGAATCGGGAACTGCAAATCATG
CGCAAGCTGCGCCACGATAACATCATCACTCTCAAGTGGTTCTTCTTTTC
AAGTGGCGAGAAAAGGGACGAGGTCTATCTGAACCTGGTCATGGAGTTCT
TGCCGGAGACGCTGTATAAAGTGGAGCGACAGTACGCAAGGGCAAAGCAA
ACCTTGCCAGTTAACTTTGTCCGACTTTACATGTACCAGCTGCTGAGGAG
CATGGGATATCTCCACAGCTTGGGATTCTGTCACAGGGACATCAAGCCGC
AGAACATGCTGCTCGATTCGGAGACGGGTGTGCTTAAGCTCTGCGATTTC
GGCAGTGCCAAGCAGCTGATCTCCGGCGAACCCAATGTCTCGTACATCTG
CTCAAGGTACTATCGTGCGCCTGAGCTAATTTTTGGCTCCACTGACTATA
CCACCAAGATCGATATGTGGAGCGCCGGGTGTGTGATGTCAGAGTTGCTG
CTGGGCCAGCTCATCTTTCCCGGGGACTCGGGAGTGGACCAGATTGTAGA
GATCGTCAAGGTTATGGGCACTCCCACCTCGGAGCAGCTCCATGACATGA
ATCCGCATTACAAGCAGTTTCAGTTGCCGGAACTGANGCCGCACCCCTGG
TCCAAGGTGTTCAGGATTCGCACCCCGGC
BS12655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31003-PA | 1506 | gskt-RA | 1..863 | 17..879 | 4196 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1772 | CG31003-RA | 136..998 | 17..879 | 4244 | 99.4 | Plus |
| sgg-RR | 5004 | CG5-RR | 1456..1832 | 395..771 | 505 | 75.9 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2658..3034 | 395..771 | 505 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31372562..31373424 | 17..879 | 4244 | 99.4 | Plus |
| X | 23542271 | X | 2671374..2671545 | 491..662 | 335 | 79.7 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:52:56 has no hits.
BS12655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:02 Download gff for
BS12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31003-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:26 Download gff for
BS12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..998 | 8..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:01 Download gff for
BS12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..998 | 8..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:01 Download gff for
BS12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31372553..31373424 | 8..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:26 Download gff for
BS12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27198275..27199146 | 8..879 | 99 | | Plus |
BS12655.complete Sequence
1538 bp assembled on 2006-11-01
GenBank Submission: FJ637253
> BS12655.complete
GAAGTTATCAGTCGACATGGCTTCCCAGAGTAAGAACAGTGGGTTGACCA
ACAAGGTGACCACGGTGGTGGCCACCAATGCCTTCGGCGCTGATGTGATG
AGCGAGATCAGCTACACGGACGCGAAAGTTGTGGGCAATGGCAGCTTCGG
CGTGGTCTTCCAGGCCAAAATGGTGCCCAGCAACGAAATGGTGGCCATAA
AGAAGGTCCTGCAGGATCGGCGCTTCAAGAATCGGGAACTGCAAATCATG
CGCAAGCTGCGCCACGATAACATCATCACTCTCAAGTGGTTCTTCTTTTC
AAGTGGCGAGAAAAGGGACGAGGTCTATCTGAACCTGGTCATGGAGTTCT
TGCCGGAGACGCTGTATAAAGTGGAGCGACAGTACGCAAGGGCAAAGCAA
ACCTTGCCAGTTAACTTTGTCCGACTTTACATGTACCAGCTGCTGAGGAG
CATGGGATATCTCCACAGCTTGGGATTCTGTCACAGGGACATCAAGCCGC
AGAACATGCTGCTCGATTCGGAGACGGGTGTGCTTAAGCTCTGCGATTTC
GGCAGTGCCAAGCAGCTGATCTCCGGCGAACCCAATGTCTCGTACATCTG
CTCAAGGTACTATCGTGCGCCTGAGCTAATTTTTGGCTCCACTGACTATA
CCACCAAGATCGATATGTGGAGCGCCGGGTGTGTGATGTCAGAGTTGCTG
CTGGGCCAGCTCATCTTTCCCGGGGACTCGGGAGTGGACCAGATTGTAGA
GATCGTCAAGGTTATGGGCACTCCCACCTCGGAGCAGCTCCATGACATGA
ATCCGCATTACAAGCAGTTCAAGTTGCCGGAACTGAAGCCGCACCCCTGG
TCCAAGGTGTTCAGGATTCGCACACCGGCGGAGGCCATAGATCTGGTCTC
CAAGATGCTGATATACTCGCCCAATGCCAGGGTTTCTCCGTTGATGGGCT
GTGCCCATCCGTTCTTCGACGAACTTCGTCAGGATCCACACCAGCAGTTG
CCCAACGGCAGGAGCTTGCCGCCGCTGTTTAACTTTACCGACTATGAGAA
AACCATCGAGCCGGATACAATGCCGCTGCTTCTGCCGCGGGCTCAGGGTT
CCAGCACCACCAAGGAGCCAAGTGCTGCCCACAGGAACCGCAATACAGCC
GGGGAGGAGAGCCCTCGGAAAACGGAGGACAGCCAAAAACCGGCGACAGC
AGCGCTCTCAAAGTCCCCTGGACCTTCGGGCAAGGCGCTCGAATCCCCGC
CAGGCTTTTTGCAACACGATTTGGGAAACGGCGACCATGTGGCTGTGGGC
ACCATGCCAATGGAGCCCCTGACCCTGGAGCAGAACCACTTCGCAGCAGA
GAGCTATGCAGTCGGCGAGGATGCCGAGGATAATTTAGAAGAGGATGTCG
GTGATGAAAACGACTATGACTACGATGATGGTGGGCAGTGCAATAGCACC
TACATCAGCGACGACATGGATGAGGCCTCCGAGTCGGATGACGACGATTT
CGAGGAAGAGGATGAAAACTAAAAGCTTTCTAGACCAT
BS12655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1506 | CG31003-PA | 1..1506 | 17..1522 | 7485 | 99.8 | Plus |
| sgg-RR | 1794 | CG2621-PR | 604..884 | 491..771 | 490 | 78.3 | Plus |
| sgg-RQ | 3507 | CG2621-PQ | 2317..2597 | 491..771 | 490 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1772 | CG31003-RA | 136..1642 | 17..1523 | 7490 | 99.8 | Plus |
| sgg-RR | 5004 | CG5-RR | 1552..1832 | 491..771 | 490 | 78.3 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2754..3034 | 491..771 | 490 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31372562..31374068 | 17..1523 | 7490 | 99.8 | Plus |
| X | 23542271 | X | 2671374..2671545 | 491..662 | 335 | 79.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:10:37 has no hits.
BS12655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:37 Download gff for
BS12655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 1..1506 | 17..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:00 Download gff for
BS12655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..1650 | 8..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:25 Download gff for
BS12655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 136..1633 | 17..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:37 Download gff for
BS12655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..1650 | 8..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:33 Download gff for
BS12655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 136..1633 | 17..1514 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:33 Download gff for
BS12655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31372562..31374059 | 17..1514 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:25 Download gff for
BS12655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27198284..27199781 | 17..1514 | 99 | | Plus |
BS12655.pep Sequence
Translation from 16 to 1521
> BS12655.pep
MASQSKNSGLTNKVTTVVATNAFGADVMSEISYTDAKVVGNGSFGVVFQA
KMVPSNEMVAIKKVLQDRRFKNRELQIMRKLRHDNIITLKWFFFSSGEKR
DEVYLNLVMEFLPETLYKVERQYARAKQTLPVNFVRLYMYQLLRSMGYLH
SLGFCHRDIKPQNMLLDSETGVLKLCDFGSAKQLISGEPNVSYICSRYYR
APELIFGSTDYTTKIDMWSAGCVMSELLLGQLIFPGDSGVDQIVEIVKVM
GTPTSEQLHDMNPHYKQFKLPELKPHPWSKVFRIRTPAEAIDLVSKMLIY
SPNARVSPLMGCAHPFFDELRQDPHQQLPNGRSLPPLFNFTDYEKTIEPD
TMPLLLPRAQGSSTTKEPSAAHRNRNTAGEESPRKTEDSQKPATAALSKS
PGPSGKALESPPGFLQHDLGNGDHVAVGTMPMEPLTLEQNHFAAESYAVG
EDAEDNLEEDVGDENDYDYDDGGQCNSTYISDDMDEASESDDDDFEEEDE
N*
BS12655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-PA | 501 | CG31003-PA | 1..501 | 1..501 | 2633 | 100 | Plus |
| sgg-PG | 496 | CG2621-PG | 15..442 | 12..428 | 1401 | 61.9 | Plus |
| sgg-PC | 514 | CG2621-PC | 33..460 | 12..428 | 1401 | 61.9 | Plus |
| sgg-PF | 514 | CG2621-PF | 33..460 | 12..428 | 1401 | 61.9 | Plus |
| sgg-PE | 514 | CG2621-PE | 33..460 | 12..428 | 1401 | 61.9 | Plus |
