Clone Sequence Records
BS12657.3prime Sequence
860 bp (749 high quality bases) assembled on 2006-10-13
> BS12657.3prime
ATGGTCTAGAAAGCTTTTAGGTCGGTACTATTTCCGTACTCTCTATAACG
GACACAATGTCCTCTGACATGTTGCACAGATGTGAGTAGGTTTGGATATA
GAGTGCATCCCGGAAATATTTGGACCGATACAATTTGCGGATCACCGCCG
TCCGGATCTTCTTCTCGTCCAACTCCGTCTCGCCTAAAATTTCCATCAGT
TTCTCCATGTCGATGGGCGTCATTGGCTTTGGTTGATCTGGTTCTTCTTC
ATCTCCTTCTTCGGACTCTCCCAACAAGCTTTGGTAGTACCGCTGAAGCT
CTGGCTTGAAAAAAGAATCTTCCACATTGAACATTAGGTCCTCCCATTCA
GCGATCCCATTGCAGATCACACCGCGCACATATATGAACCGCGACCGTTG
CTTTTGGACATCCTGCTGGGAAGAGGCATTCAGTGAGAATCCGCCACCTA
GCAAAGGAGCGAGAAGTTGGTTAAATTCGGAAAAGATCGATTCCCGCTCC
ACCAGTCCGTTAATCCGCATTATGTAGTCCTTAATCGTTGATAGGCGCAT
ATCCCAGAGCGGCTCCCGCGGCTTCTTTAAGCGCTGATGGAACGCACGAA
GCACCTCCAGGTCATCGAAGCGGGCACAAATGTATCCCGGATTTAGGGCG
TTGAACGCCTCCCGATCGTCCAGAGGCCGCTCATAGGGGCAGCACGTCGG
TGGAGGCACCACCATGGGAGCCAGAGCGCCCAAATGGGTGGTCAATTTAT
CCCTTTCCACTGCATCCGACTTGCAGATGCAGACGCATTGGCACTCGAGT
AGTTTGGCCATGTAGTCAGCTGGCGGAGTGCAACGTCCGTAAAGGCGGAG
CAGTAAAGAC
BS12657.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33140-PA | 2163 | CG33140-RA | 1324..2163 | 856..17 | 4175 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33140-RA | 2341 | CG33140-RA | 1428..2271 | 860..17 | 4190 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7179817..7180660 | 860..17 | 4190 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:26:52 has no hits.
BS12657.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:03 Download gff for
BS12657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-PA | 1320..2163 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:06:01 Download gff for
BS12657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-RA | 1428..2271 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:55 Download gff for
BS12657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-RA | 1428..2271 | 17..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:55 Download gff for
BS12657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7179817..7180664 | 14..860 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:06:01 Download gff for
BS12657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3067322..3068169 | 14..860 | 99 | -> | Minus |
BS12657.5prime Sequence
892 bp (789 high quality bases) assembled on 2006-10-13
> BS12657.5prime
GAAGTTATCAGTCGACATGGAGGGCATGGAAGATATTAACCTCAAAACCA
ACGGGTCCGATACCTTTTCGAAATTTACACTGGCCAACATGGTGTCGCTG
CCATCTTCTTTGACCGAACCGACGACCCGTTCGACTGCACAGGCGCAGCT
GAATGCCGAGTCCCCCATGGGCAAGTACACGGAGCGCATGGTGGAGGATA
TTCTGACCGAGATTTTCAAGGAGCGACGGGGGGACTTTCCAGAGACCTCA
TCCTCTTGTCACGCGGCTAATATTCCGTGGCCAATTAAGGAGCGGGAACC
GCACGTGGACAAACGGCTGCGATACTGGAAGGAGGTACTTCACCAGCGCA
AGTTGATGCAAGAACGAGTCCAGCGGGAAACGGGCAAGCTGGCCAGTGAG
GTGCTCTTCAACCGCCGCTCCACTCTGGACAACCGCGACGGGCAAATGGT
GAAGCGCGTGCTGGACTACGCGGACCGCATGAAGGGCGAGCGTCTGATGA
GCGCGCCACTTTCCAAGCTGGGCGACCAATTGGATCCATGTACCTGCCAG
GTAGTTCCTGGACTGCAGGCCACGACACCGAAAGCGGAAAAGGTGGGCTA
CAAGGATTTAGAGATCGTTGGCATGCCAGAGGTCTGCAAAACGGAGATCT
TGGGTAAGGAGGCCATGGAGCAGGACCCACCACCAGGCTGGCTGCAATCG
GAGTTCCTGGACAAACGACTGGAGCAAAACTTTGTAGACATCCAAAACGT
TGTGGAGTTCTTTCCCGATGTGGATGCCCTGCAGGTGAAGGGTACTGCTC
TCAGCAAGATCAATCGATTACCGAAGCCGTTCCTAGTGGATGTGGATTCA
TGCACACGGTGACAAAAAGTGAGAGCTCGCCGATCTGCACCG
BS12657.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33140-PA | 2163 | CG33140-RA | 1..877 | 17..892 | 4295 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33140-RA | 2341 | CG33140-RA | 109..985 | 17..892 | 4330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7178498..7179374 | 17..892 | 4305 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:39:30 has no hits.
BS12657.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:03 Download gff for
BS12657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-PA | 1..877 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:17:59 Download gff for
BS12657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-RA | 109..985 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:51 Download gff for
BS12657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-RA | 109..985 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:51 Download gff for
BS12657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7178498..7179374 | 17..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:17:59 Download gff for
BS12657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3066003..3066879 | 17..892 | 99 | | Plus |
BS12657.complete Sequence
2195 bp assembled on 2008-08-14
GenBank Submission: FJ637254
> BS12657.complete
GAAGTTATCAGTCGACATGGAGGGCATGGAAGATATTAACCTCAAAACCA
ACGGGTCCGATACCTTTTCGAAATTTACACTGGCCAACATGGTGTCGCTG
CCATCTTCTTTGACCGAACCGACGACCCGTTCGACTGCACAGGCGCAGCT
GAATGCCGAGTCCCCCATGGGCAAGTACACGGAGCGCATGGTGGAGGATA
TTCTGACCGAGATTTTCAAGGAGCGACGGGGGGACTTTCCAGAGACCTCA
TCCTCTTGTCACGCGGCTAATATTCCGTGGCCAATTAAGGAGCGGGAACC
GCACGTGGACAAACGGCTGCGATACTGGAAGGAGGTACTTCACCAGCGCA
AGTTGATGCAAGAACGAGTCCAGCGGGAAACGGGCAAGCTGGCCAGTGAG
GTGCTCTTCAACCGCCGCTCCACTCTGGACAACCGCGACGGGCAAATGGT
GAAGCGCGTGCTGGACTACGCGGACCGCATGAAGGGCGAGCGTCTGATGA
GCGCGCCACTTTCCAAGCTGGGCGACCAATTGGATCCATGTACCTGCCAG
GTAGTTCCTGGACTGCAGGCCACGACACCGAAAGCGGAAAAGGTGGGCTA
CAAGGATTTAGAGATCGTTGGCATGCCAGAGGTCTGCAAAACGGAGATCT
TGGGTAAGGAGGCCATGGAGCAGGACCCACCACCAGGCTGGCTGCAATCG
GAGTTCCTGGACAAACGACTGGAGCAAAACTTTGTAGACATCCAAAACGT
TGTGGAGTTCTTTCCCGATGTGGATGCCCTGCAGGTGAAGGGTACTGCTC
TCAGCAAGATCAATCGATTACCGAAGCCGTTCCTAGTGGATGTGGATTCC
ATGCACACGGTGACCAAAAGTGAGAGCTCGCCGATCTGCACCGAGGAGTG
CATCTGCGAGTCGTGTGGCGAAACGGAGGAGAAATCGTCAGGAACTCCAC
CTCCCATTCCGGATGTGGGACTACGGGTTAATGGTGTAGATTACGTTCCG
TGCGAGGGAGATGGCGGCGGAATTAAGGACTGCTATGAAATAGTCGCCCG
ATTCACATGCGATCCGTTTCAGCGTCGCCTCAAGCACGTCCTACAGCTGA
CCAACATTGGCACACAGTCGCTCTCCTTCTCCTGGAAACAGAGCACTTAC
TACTACAACCGTGGATCTCTGTTGCTGGCCCAGGACAACGAGTTTCACTT
TGACCTGGAGGGCTTCAGACTGTCGCACGGTGAGACTCGGAATGTAGCAG
TGCTCTACCAGCCACGAAAAGTGGCGATGGCGGTGGAGTTGTGGCTGCTT
CAGGTGGAGCCGCGAATCTTTTGCGGCCGCCAGGAGTCCTTACTGCTCCG
CCTTTACGGACGTTGCACTCCGCCAGCTGACTACATGGCCAAACTACTCG
AGTGCCAATGCGTCTGCATCTGCAAGTCGGATGCAGTGGAAATGGATAAA
TTGACCACCCATTTGGGCGCTCTGGCTCCCATGGTGGTGCCTCCACCGAC
GTGCTGCCCCTATGAGCGGCCTCTGGACGATCGGGAGGCGTTCAACGCCC
TAAATCCGGGATACATTTGTGCCCGCTTCGATGACCTGGAGGTGCTTCGT
GCGTTCCATCAGCGCTTAAAGAAGCCGCGGGAGCCGCTCTGGGATATGCG
CCTATCAACGATTAAGGACTACATAATGCGGATTAACGGACTGGTGGAGC
GGGAATCGATCTTTTCCGAATTTAACCAACTTCTCGCTCCTTTGCTAGGT
GGCGGATTCTCACTGAATGCCTCTTCCCAGCAGGATGTCCAAAAGCAACG
GTCGCGGTTCATATATGTGCGCGGTGTGATCTGCAATGGGATCGCTGAAT
GGGAGGACCTAATGTTCAATGTGGAAGATTCTTTTTTCAAGCCAGAGCTT
CAGCGGTACTACCAAAGCTTGTTGGGAGAGTCCGAAGAAGGAGATGAAGA
AGAACCAGATCAACCAAAGCCAATGACGCCCATCGACATGGAGAAACTGA
TGGAAATTTTAGGCGAGACGGAGTTGGACGAGAAGAAGATCCGGACGGCG
GTGATCCGCAAATTGTATCGGTCCAAATATTTCCGGGATGCACTCTATAT
CCAAACCTACTCACATCTGTGCAACATGTCAGAGGACATTGTGTCCGTTA
TAGAGAGTACGGAAATAGTACCGACCTAAAAGCTTTCTAGACCAT
BS12657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33140-RA | 2163 | CG33140-PA | 1..2163 | 17..2179 | 10785 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33140-RA | 2341 | CG33140-RA | 109..2271 | 17..2179 | 10785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7178498..7180660 | 17..2179 | 10785 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:46:10 has no hits.
BS12657.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:53 Download gff for
BS12657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-RA | 109..2271 | 17..2179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:20 Download gff for
BS12657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-RA | 109..2269 | 17..2177 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:37 Download gff for
BS12657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-RA | 109..2269 | 17..2177 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:05 Download gff for
BS12657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33140-RA | 109..2269 | 17..2177 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:05 Download gff for
BS12657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7178498..7180658 | 17..2177 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:20 Download gff for
BS12657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3066003..3068163 | 17..2177 | 99 | | Plus |
BS12657.pep Sequence
Translation from 16 to 2178
> BS12657.pep
MEGMEDINLKTNGSDTFSKFTLANMVSLPSSLTEPTTRSTAQAQLNAESP
MGKYTERMVEDILTEIFKERRGDFPETSSSCHAANIPWPIKEREPHVDKR
LRYWKEVLHQRKLMQERVQRETGKLASEVLFNRRSTLDNRDGQMVKRVLD
YADRMKGERLMSAPLSKLGDQLDPCTCQVVPGLQATTPKAEKVGYKDLEI
VGMPEVCKTEILGKEAMEQDPPPGWLQSEFLDKRLEQNFVDIQNVVEFFP
DVDALQVKGTALSKINRLPKPFLVDVDSMHTVTKSESSPICTEECICESC
GETEEKSSGTPPPIPDVGLRVNGVDYVPCEGDGGGIKDCYEIVARFTCDP
FQRRLKHVLQLTNIGTQSLSFSWKQSTYYYNRGSLLLAQDNEFHFDLEGF
RLSHGETRNVAVLYQPRKVAMAVELWLLQVEPRIFCGRQESLLLRLYGRC
TPPADYMAKLLECQCVCICKSDAVEMDKLTTHLGALAPMVVPPPTCCPYE
RPLDDREAFNALNPGYICARFDDLEVLRAFHQRLKKPREPLWDMRLSTIK
DYIMRINGLVERESIFSEFNQLLAPLLGGGFSLNASSQQDVQKQRSRFIY
VRGVICNGIAEWEDLMFNVEDSFFKPELQRYYQSLLGESEEGDEEEPDQP
KPMTPIDMEKLMEILGETELDEKKIRTAVIRKLYRSKYFRDALYIQTYSH
LCNMSEDIVSVIESTEIVPT*
BS12657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33140-PA | 720 | CG33140-PA | 1..720 | 1..720 | 3797 | 100 | Plus |
| CG30384-PA | 708 | CG30384-PA | 65..706 | 56..716 | 859 | 33.2 | Plus |
| CG11060-PA | 706 | CG11060-PA | 51..704 | 59..715 | 781 | 31.3 | Plus |
| CG30385-PA | 536 | CG30385-PA | 24..533 | 58..715 | 491 | 25.8 | Plus |
