Clone Sequence Records
BS12659.3prime Sequence
873 bp (865 high quality bases) assembled on 2006-10-13
> BS12659.3prime
ATGGTCTAGAAAGCTTCTACCGGCGATTGATCAGCCCGTTAGGAGGCGCC
TGTTGGCTAGCCGTATGCATCAGCTCTAGCTCGACCAGCAGTGGGAAGTG
ATCAGAGGGTATATGCGGATGTGGGCATCCAACAACCTTATTCTCGCGCA
GCCAATCATTGGAGACAGGACCCAGCAGGCCCAGCGGCACCATGCCCGTC
TTCGTGTAGAAAATGTAGTCGATGATGCCCTTAAAATCGAACGTATAGTT
GGTGTGCGGCATTATGTCCTCGTTGTAGGCGGAGGCTAGCTTGAACGAGT
GCGTAAACTCGTTGGTGTCGTTCGAGAGCAGCCGCTGCAGGCAGGACTTG
TAGCCCATGTCCTTGAAGTCCAAATGATCCATGGAAACGCGGCCCTTGCC
GAGAAACTCCACAACGCCTGAATCGGGTAGCGAGTTGAAGTCACCGCACA
GCAGCAGCTGGACAGCATTGGAGTCGTTCTTGTGACCAGGTCGGAAACTG
TGGCTCGCCTCGTCGATGATCGTCTTCAACTCATTGCTAAGCATCATCGT
CTGGATGAGCTTGACGTCGCAGAACTCAGGGTCCCAGTGTATGTGCGCCG
TGCAGACGAGCAGCGGCTGCGAGATCTGCGTCACCTCGGACATCGGCTCC
CATGCGTTCTCCTTCACCTTGAGCAGTGCGGCCAGACCGATGTTATCCTT
AGGCATTACGCGGTTCAGCATGTTGTCGGAGCCCTCGGCATTGGCCATTG
CCAGCTGATTGAACTCGATCAATGATTCCTTGATCAGCGTAAACTTGGAC
GCCCTGAAGAATATCGCACAGCCATCGACGTACTTCCTCTCCAGCTCGGA
CATAGTCTTAACACGCGACTTCG
BS12659.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31137-PA | 1659 | twin-RA | 803..1659 | 873..17 | 4260 | 99.8 | Minus |
CG31137-PB | 1638 | twin-RB | 782..1638 | 873..17 | 4260 | 99.8 | Minus |
CG31137-PE | 1659 | twin-RE | 803..1659 | 873..17 | 4260 | 99.8 | Minus |
CG31137-PC | 1704 | twin-RC | 848..1704 | 873..17 | 4260 | 99.8 | Minus |
CG31137-PD | 1077 | twin-RD | 221..1077 | 873..17 | 4260 | 99.8 | Minus |
CG31137-PF | 1659 | twin-RF | 803..1659 | 873..17 | 4260 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 2690 | CG31137-RF | 989..1845 | 873..17 | 4270 | 99.9 | Minus |
twin-RD | 2950 | CG31137-RD | 1249..2105 | 873..17 | 4270 | 99.9 | Minus |
twin-RC | 2586 | CG31137-RC | 885..1741 | 873..17 | 4270 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24198436..24199213 | 17..794 | 3890 | 100 | Plus |
3R | 32079331 | 3R | 24199273..24199353 | 793..873 | 390 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:41:26 has no hits.
BS12659.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:04 Download gff for
BS12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31137-PF | 803..1659 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:32:05 Download gff for
BS12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 885..1741 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:07 Download gff for
BS12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 885..1741 | 17..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:07 Download gff for
BS12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24198436..24199213 | 17..794 | 100 | <- | Plus |
3R | 24199275..24199353 | 795..873 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:32:05 Download gff for
BS12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20024158..20024935 | 17..794 | 100 | <- | Plus |
arm_3R | 20024997..20025075 | 795..873 | 98 | | Plus |
BS12659.5prime Sequence
904 bp (759 high quality bases) assembled on 2006-10-13
> BS12659.5prime
GAAGTTATCAGTCGACATGTCTCGTAACAAGGACAAATACGACAGCGCCA
ATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACATAGCTGCGGGCAAG
AAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCGTCCGCAATATCAG
CCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTCTACCTGAACGACA
ACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCTGACCAGCCTCCGA
ACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTCCCGCAGAGCTCGG
CGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAACAACTTTCTGCGCG
TACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGTCATACTCGGCCTC
ATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCTACAACGAACCGAA
CGGCACGCAGAAACTGCTCACCTACATGCTGGACAACTTGTCATTTACCG
TGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGCCAAGCCCAACAAA
ACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATAATGTGCTCTGCGA
CAAGTACGCGACGCGACAAATGTACGGATACTGTCCGTCGTGGGCGCTAT
GCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGATACGGCACTATGCA
GCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGCAATTCTATCACTT
CTTCCTGCCGGAACTCAAGAACGATGGGTACGAGGGAATCTTCTCACCGA
AGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAAGTACGTCGATGGC
TGTGCGATATTCTTCANGGCGTCCAAGTTTACGCTGATCAAGGAATCATT
GATC
BS12659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31137-PA | 1659 | twin-RA | 22..909 | 17..904 | 4396 | 99.7 | Plus |
CG31137-PB | 1638 | twin-RB | 1..888 | 17..904 | 4396 | 99.7 | Plus |
CG31137-PE | 1659 | twin-RE | 22..909 | 17..904 | 4396 | 99.7 | Plus |
CG31137-PC | 1704 | twin-RC | 67..954 | 17..904 | 4396 | 99.7 | Plus |
CG31137-PF | 1659 | twin-RF | 22..909 | 17..904 | 4396 | 99.7 | Plus |
CG31137-PD | 1077 | twin-RD | 1..327 | 578..904 | 1616 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 2690 | CG31137-RF | 208..1095 | 17..904 | 4414 | 99.8 | Plus |
twin-RC | 2586 | CG31137-RC | 104..991 | 17..904 | 4414 | 99.8 | Plus |
twin-RE | 3548 | CG31137-RE | 368..1255 | 17..904 | 4414 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24199273..24199587 | 878..564 | 1564 | 99.7 | Minus |
3R | 32079331 | 3R | 24219964..24220157 | 319..126 | 955 | 99.5 | Minus |
3R | 32079331 | 3R | 24219600..24219776 | 494..318 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24220214..24220329 | 132..17 | 565 | 99.1 | Minus |
3R | 32079331 | 3R | 24199882..24199951 | 564..495 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:45:28 has no hits.
BS12659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:05 Download gff for
BS12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31137-PF | 22..909 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:06 Download gff for
BS12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 368..1255 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:25 Download gff for
BS12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 368..1255 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:25 Download gff for
BS12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24199186..24199213 | 877..904 | 100 | <- | Minus |
3R | 24199275..24199587 | 564..876 | 99 | <- | Minus |
3R | 24199883..24199951 | 495..563 | 100 | <- | Minus |
3R | 24219600..24219775 | 319..494 | 100 | <- | Minus |
3R | 24219965..24220151 | 132..318 | 100 | <- | Minus |
3R | 24220215..24220329 | 17..131 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:06 Download gff for
BS12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20024908..20024935 | 877..904 | 100 | <- | Minus |
arm_3R | 20024997..20025309 | 564..876 | 99 | <- | Minus |
arm_3R | 20025605..20025673 | 495..563 | 100 | <- | Minus |
arm_3R | 20045322..20045497 | 319..494 | 100 | <- | Minus |
arm_3R | 20045687..20045873 | 132..318 | 100 | <- | Minus |
arm_3R | 20045937..20046051 | 17..131 | 99 | | Minus |
BS12659.complete Sequence
1670 bp assembled on 2008-08-14
GenBank Submission: FJ637255
> BS12659.complete
GAAGTTATCAGTCGACATGTCTCGTAACAAGGACAAATACGACAGCGCCA
ATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACATAGCTGCGGGCAAG
AAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCGTCCGCAATATCAG
CCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTCTACCTGAACGACA
ACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCTGACCAGCCTCCGA
ACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTCCCGCAGAGCTCGG
CGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAACAACTTTCTGCGCG
TACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGTCATACTCGGCCTC
ATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCTACAACGAACCGAA
CGGCACGCAGAAACTGCTCACCTACATGCTGGACAACTTGTCATTTACCG
TGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGCCAAGCCCAACAAA
ACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATAATGTGCTCTGCGA
CAAGTACGCGACGCGACAAATGTACGGATACTGTCCGTCGTGGGCGCTAT
GCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGATACGGCACTATGCA
GCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGCAATTCTATCACTT
CTTCCTGCCGGAACTCAAGAACGATGGGTACGAGGGAATCTTCTCACCGA
AGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAAGTACGTCGATGGC
TGTGCGATATTCTTCAGGGCGTCCAAGTTTACGCTGATCAAGGAATCATT
GATCGAGTTCAATCAGCTGGCAATGGCCAATGCCGAGGGCTCCGACAACA
TGCTGAACCGCGTAATGCCTAAGGATAACATCGGTCTGGCCGCACTGCTC
AAGGTGAAGGAGAACGCATGGGAGCCGATGTCCGAGGTGACGCAGATCTC
GCAGCCGCTGCTCGTCTGCACGGCGCACATACACTGGGACCCTGAGTTCT
GCGACGTCAAGCTCATCCAGACGATGATGCTTAGCAATGAGTTGAAGACG
ATCATCGACGAGGCGAGCCACAGTTTCCGACCTGGTCACAAGAACGACTC
CAATGCTGTCCAGCTGCTGCTGTGCGGTGACTTCAACTCGCTACCCGATT
CAGGCGTTGTGGAGTTTCTCGGCAAGGGCCGCGTTTCCATGGATCATTTG
GACTTCAAGGACATGGGCTACAAGTCCTGCCTGCAGCGGCTGCTCTCGAA
CGACACCAACGAGTTTACGCACTCGTTCAAGCTAGCCTCCGCCTACAACG
AGGACATAATGCCGCACACCAACTATACGTTCGATTTTAAGGGCATCATC
GACTACATTTTCTACACGAAGACGGGCATGGTGCCGCTGGGCCTGCTGGG
TCCTGTCTCCAATGATTGGCTGCGCGAGAATAAGGTTGTTGGATGCCCAC
ATCCGCATATACCCTCTGATCACTTCCCACTGCTGGTCGAGCTAGAGCTG
ATGCATACGGCTAGCCAACAGGCGCCTCCTAACGGGCTGATCAATCGCCG
GTAGAAGCTTTCTAGACCAT
BS12659.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 1659 | CG31137-PF | 22..1659 | 17..1654 | 8175 | 99.9 | Plus |
twin-RC | 1704 | CG31137-PC | 67..1704 | 17..1654 | 8175 | 99.9 | Plus |
twin-RE | 1659 | CG31137-PE | 22..1659 | 17..1654 | 8175 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 2690 | CG31137-RF | 208..1845 | 17..1654 | 8175 | 99.9 | Plus |
twin-RC | 2586 | CG31137-RC | 104..1741 | 17..1654 | 8175 | 99.9 | Plus |
twin-RE | 3548 | CG31137-RE | 368..2005 | 17..1654 | 8175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24198436..24199213 | 1654..877 | 3890 | 100 | Minus |
3R | 32079331 | 3R | 24199273..24199587 | 878..564 | 1575 | 100 | Minus |
3R | 32079331 | 3R | 24219964..24220157 | 319..126 | 955 | 99.5 | Minus |
3R | 32079331 | 3R | 24219600..24219776 | 494..318 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24220214..24220329 | 132..17 | 565 | 99.1 | Minus |
3R | 32079331 | 3R | 24199882..24199951 | 564..495 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:15:52 has no hits.
BS12659.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:49:35 Download gff for
BS12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 368..2005 | 17..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:06 Download gff for
BS12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 368..2005 | 17..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:25 Download gff for
BS12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 368..2005 | 17..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:49 Download gff for
BS12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 368..2005 | 17..1654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:49 Download gff for
BS12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24220215..24220329 | 17..131 | 99 | | Minus |
3R | 24219965..24220151 | 132..318 | 100 | <- | Minus |
3R | 24219600..24219775 | 319..494 | 100 | <- | Minus |
3R | 24198436..24199213 | 877..1654 | 100 | <- | Minus |
3R | 24199275..24199587 | 564..876 | 100 | <- | Minus |
3R | 24199883..24199951 | 495..563 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:06 Download gff for
BS12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20024158..20024935 | 877..1654 | 100 | <- | Minus |
arm_3R | 20024997..20025309 | 564..876 | 100 | <- | Minus |
arm_3R | 20025605..20025673 | 495..563 | 100 | <- | Minus |
arm_3R | 20045322..20045497 | 319..494 | 100 | <- | Minus |
arm_3R | 20045687..20045873 | 132..318 | 100 | <- | Minus |
arm_3R | 20045937..20046051 | 17..131 | 99 | | Minus |
BS12659.pep Sequence
Translation from 16 to 1653
> BS12659.pep
MSRNKDKYDSANRRQQIFLSQEDIAAGKKTNWSGLEITGCVRNISPSLWE
FEHLTALYLNDNQLLRLPADVGMLTSLRTLDLSSNKLRSLPAELGELIQL
RELLLNNNFLRVLPYEIGKLFHLVILGLMGNPLQKEFMNIYNEPNGTQKL
LTYMLDNLSFTVNPPPQRPWLPLAKPNKTRPACIFTVMCYNVLCDKYATR
QMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYHFFLPEL
KNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQ
LAMANAEGSDNMLNRVMPKDNIGLAALLKVKENAWEPMSEVTQISQPLLV
CTAHIHWDPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKNDSNAVQL
LLCGDFNSLPDSGVVEFLGKGRVSMDHLDFKDMGYKSCLQRLLSNDTNEF
THSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGMVPLGLLGPVSND
WLRENKVVGCPHPHIPSDHFPLLVELELMHTASQQAPPNGLINRR*
BS12659.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-PF | 552 | CG31137-PF | 8..552 | 1..545 | 2897 | 100 | Plus |
twin-PC | 567 | CG31137-PC | 23..567 | 1..545 | 2897 | 100 | Plus |
twin-PE | 552 | CG31137-PE | 8..552 | 1..545 | 2897 | 100 | Plus |
twin-PB | 545 | CG31137-PB | 1..545 | 1..545 | 2897 | 100 | Plus |
twin-PA | 552 | CG31137-PA | 8..552 | 1..545 | 2897 | 100 | Plus |