Clone BS12659 Report

Search the DGRC for BS12659

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:59
Vector:pDNR-Dual
Associated Gene/Transcripttwin-RB
Protein status:BS12659.pep: full length peptide match
Sequenced Size:1670

Clone Sequence Records

BS12659.3prime Sequence

873 bp (865 high quality bases) assembled on 2006-10-13

> BS12659.3prime
ATGGTCTAGAAAGCTTCTACCGGCGATTGATCAGCCCGTTAGGAGGCGCC
TGTTGGCTAGCCGTATGCATCAGCTCTAGCTCGACCAGCAGTGGGAAGTG
ATCAGAGGGTATATGCGGATGTGGGCATCCAACAACCTTATTCTCGCGCA
GCCAATCATTGGAGACAGGACCCAGCAGGCCCAGCGGCACCATGCCCGTC
TTCGTGTAGAAAATGTAGTCGATGATGCCCTTAAAATCGAACGTATAGTT
GGTGTGCGGCATTATGTCCTCGTTGTAGGCGGAGGCTAGCTTGAACGAGT
GCGTAAACTCGTTGGTGTCGTTCGAGAGCAGCCGCTGCAGGCAGGACTTG
TAGCCCATGTCCTTGAAGTCCAAATGATCCATGGAAACGCGGCCCTTGCC
GAGAAACTCCACAACGCCTGAATCGGGTAGCGAGTTGAAGTCACCGCACA
GCAGCAGCTGGACAGCATTGGAGTCGTTCTTGTGACCAGGTCGGAAACTG
TGGCTCGCCTCGTCGATGATCGTCTTCAACTCATTGCTAAGCATCATCGT
CTGGATGAGCTTGACGTCGCAGAACTCAGGGTCCCAGTGTATGTGCGCCG
TGCAGACGAGCAGCGGCTGCGAGATCTGCGTCACCTCGGACATCGGCTCC
CATGCGTTCTCCTTCACCTTGAGCAGTGCGGCCAGACCGATGTTATCCTT
AGGCATTACGCGGTTCAGCATGTTGTCGGAGCCCTCGGCATTGGCCATTG
CCAGCTGATTGAACTCGATCAATGATTCCTTGATCAGCGTAAACTTGGAC
GCCCTGAAGAATATCGCACAGCCATCGACGTACTTCCTCTCCAGCTCGGA
CATAGTCTTAACACGCGACTTCG

BS12659.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31137-PA 1659 twin-RA 803..1659 873..17 4260 99.8 Minus
CG31137-PB 1638 twin-RB 782..1638 873..17 4260 99.8 Minus
CG31137-PE 1659 twin-RE 803..1659 873..17 4260 99.8 Minus
CG31137-PC 1704 twin-RC 848..1704 873..17 4260 99.8 Minus
CG31137-PD 1077 twin-RD 221..1077 873..17 4260 99.8 Minus
CG31137-PF 1659 twin-RF 803..1659 873..17 4260 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 2690 CG31137-RF 989..1845 873..17 4270 99.9 Minus
twin-RD 2950 CG31137-RD 1249..2105 873..17 4270 99.9 Minus
twin-RC 2586 CG31137-RC 885..1741 873..17 4270 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24198436..24199213 17..794 3890 100 Plus
3R 32079331 3R 24199273..24199353 793..873 390 98.8 Plus
Blast to na_te.dros performed on 2015-02-10 17:41:26 has no hits.

BS12659.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:04 Download gff for BS12659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31137-PF 803..1659 17..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:32:05 Download gff for BS12659.3prime
Subject Subject Range Query Range Percent Splice Strand
twin-RC 885..1741 17..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:07 Download gff for BS12659.3prime
Subject Subject Range Query Range Percent Splice Strand
twin-RC 885..1741 17..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:07 Download gff for BS12659.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24198436..24199213 17..794 100 <- Plus
3R 24199275..24199353 795..873 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:32:05 Download gff for BS12659.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20024158..20024935 17..794 100 <- Plus
arm_3R 20024997..20025075 795..873 98   Plus

BS12659.5prime Sequence

904 bp (759 high quality bases) assembled on 2006-10-13

> BS12659.5prime
GAAGTTATCAGTCGACATGTCTCGTAACAAGGACAAATACGACAGCGCCA
ATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACATAGCTGCGGGCAAG
AAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCGTCCGCAATATCAG
CCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTCTACCTGAACGACA
ACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCTGACCAGCCTCCGA
ACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTCCCGCAGAGCTCGG
CGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAACAACTTTCTGCGCG
TACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGTCATACTCGGCCTC
ATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCTACAACGAACCGAA
CGGCACGCAGAAACTGCTCACCTACATGCTGGACAACTTGTCATTTACCG
TGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGCCAAGCCCAACAAA
ACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATAATGTGCTCTGCGA
CAAGTACGCGACGCGACAAATGTACGGATACTGTCCGTCGTGGGCGCTAT
GCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGATACGGCACTATGCA
GCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGCAATTCTATCACTT
CTTCCTGCCGGAACTCAAGAACGATGGGTACGAGGGAATCTTCTCACCGA
AGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAAGTACGTCGATGGC
TGTGCGATATTCTTCANGGCGTCCAAGTTTACGCTGATCAAGGAATCATT
GATC

BS12659.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31137-PA 1659 twin-RA 22..909 17..904 4396 99.7 Plus
CG31137-PB 1638 twin-RB 1..888 17..904 4396 99.7 Plus
CG31137-PE 1659 twin-RE 22..909 17..904 4396 99.7 Plus
CG31137-PC 1704 twin-RC 67..954 17..904 4396 99.7 Plus
CG31137-PF 1659 twin-RF 22..909 17..904 4396 99.7 Plus
CG31137-PD 1077 twin-RD 1..327 578..904 1616 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 2690 CG31137-RF 208..1095 17..904 4414 99.8 Plus
twin-RC 2586 CG31137-RC 104..991 17..904 4414 99.8 Plus
twin-RE 3548 CG31137-RE 368..1255 17..904 4414 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24199273..24199587 878..564 1564 99.7 Minus
3R 32079331 3R 24219964..24220157 319..126 955 99.5 Minus
3R 32079331 3R 24219600..24219776 494..318 885 100 Minus
3R 32079331 3R 24220214..24220329 132..17 565 99.1 Minus
3R 32079331 3R 24199882..24199951 564..495 350 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:45:28 has no hits.

BS12659.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:05 Download gff for BS12659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31137-PF 22..909 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:06 Download gff for BS12659.5prime
Subject Subject Range Query Range Percent Splice Strand
twin-RE 368..1255 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:25 Download gff for BS12659.5prime
Subject Subject Range Query Range Percent Splice Strand
twin-RE 368..1255 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:25 Download gff for BS12659.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24199186..24199213 877..904 100 <- Minus
3R 24199275..24199587 564..876 99 <- Minus
3R 24199883..24199951 495..563 100 <- Minus
3R 24219600..24219775 319..494 100 <- Minus
3R 24219965..24220151 132..318 100 <- Minus
3R 24220215..24220329 17..131 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:06 Download gff for BS12659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20024908..20024935 877..904 100 <- Minus
arm_3R 20024997..20025309 564..876 99 <- Minus
arm_3R 20025605..20025673 495..563 100 <- Minus
arm_3R 20045322..20045497 319..494 100 <- Minus
arm_3R 20045687..20045873 132..318 100 <- Minus
arm_3R 20045937..20046051 17..131 99   Minus

BS12659.complete Sequence

1670 bp assembled on 2008-08-14

GenBank Submission: FJ637255

> BS12659.complete
GAAGTTATCAGTCGACATGTCTCGTAACAAGGACAAATACGACAGCGCCA
ATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACATAGCTGCGGGCAAG
AAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCGTCCGCAATATCAG
CCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTCTACCTGAACGACA
ACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCTGACCAGCCTCCGA
ACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTCCCGCAGAGCTCGG
CGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAACAACTTTCTGCGCG
TACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGTCATACTCGGCCTC
ATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCTACAACGAACCGAA
CGGCACGCAGAAACTGCTCACCTACATGCTGGACAACTTGTCATTTACCG
TGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGCCAAGCCCAACAAA
ACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATAATGTGCTCTGCGA
CAAGTACGCGACGCGACAAATGTACGGATACTGTCCGTCGTGGGCGCTAT
GCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGATACGGCACTATGCA
GCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGCAATTCTATCACTT
CTTCCTGCCGGAACTCAAGAACGATGGGTACGAGGGAATCTTCTCACCGA
AGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAAGTACGTCGATGGC
TGTGCGATATTCTTCAGGGCGTCCAAGTTTACGCTGATCAAGGAATCATT
GATCGAGTTCAATCAGCTGGCAATGGCCAATGCCGAGGGCTCCGACAACA
TGCTGAACCGCGTAATGCCTAAGGATAACATCGGTCTGGCCGCACTGCTC
AAGGTGAAGGAGAACGCATGGGAGCCGATGTCCGAGGTGACGCAGATCTC
GCAGCCGCTGCTCGTCTGCACGGCGCACATACACTGGGACCCTGAGTTCT
GCGACGTCAAGCTCATCCAGACGATGATGCTTAGCAATGAGTTGAAGACG
ATCATCGACGAGGCGAGCCACAGTTTCCGACCTGGTCACAAGAACGACTC
CAATGCTGTCCAGCTGCTGCTGTGCGGTGACTTCAACTCGCTACCCGATT
CAGGCGTTGTGGAGTTTCTCGGCAAGGGCCGCGTTTCCATGGATCATTTG
GACTTCAAGGACATGGGCTACAAGTCCTGCCTGCAGCGGCTGCTCTCGAA
CGACACCAACGAGTTTACGCACTCGTTCAAGCTAGCCTCCGCCTACAACG
AGGACATAATGCCGCACACCAACTATACGTTCGATTTTAAGGGCATCATC
GACTACATTTTCTACACGAAGACGGGCATGGTGCCGCTGGGCCTGCTGGG
TCCTGTCTCCAATGATTGGCTGCGCGAGAATAAGGTTGTTGGATGCCCAC
ATCCGCATATACCCTCTGATCACTTCCCACTGCTGGTCGAGCTAGAGCTG
ATGCATACGGCTAGCCAACAGGCGCCTCCTAACGGGCTGATCAATCGCCG
GTAGAAGCTTTCTAGACCAT

BS12659.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 1659 CG31137-PF 22..1659 17..1654 8175 99.9 Plus
twin-RC 1704 CG31137-PC 67..1704 17..1654 8175 99.9 Plus
twin-RE 1659 CG31137-PE 22..1659 17..1654 8175 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 2690 CG31137-RF 208..1845 17..1654 8175 99.9 Plus
twin-RC 2586 CG31137-RC 104..1741 17..1654 8175 99.9 Plus
twin-RE 3548 CG31137-RE 368..2005 17..1654 8175 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24198436..24199213 1654..877 3890 100 Minus
3R 32079331 3R 24199273..24199587 878..564 1575 100 Minus
3R 32079331 3R 24219964..24220157 319..126 955 99.5 Minus
3R 32079331 3R 24219600..24219776 494..318 885 100 Minus
3R 32079331 3R 24220214..24220329 132..17 565 99.1 Minus
3R 32079331 3R 24199882..24199951 564..495 350 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:15:52 has no hits.

BS12659.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:49:35 Download gff for BS12659.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RE 368..2005 17..1654 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:06 Download gff for BS12659.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RE 368..2005 17..1654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:25 Download gff for BS12659.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RE 368..2005 17..1654 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:49 Download gff for BS12659.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RE 368..2005 17..1654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:49 Download gff for BS12659.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24220215..24220329 17..131 99   Minus
3R 24219965..24220151 132..318 100 <- Minus
3R 24219600..24219775 319..494 100 <- Minus
3R 24198436..24199213 877..1654 100 <- Minus
3R 24199275..24199587 564..876 100 <- Minus
3R 24199883..24199951 495..563 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:06 Download gff for BS12659.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20024158..20024935 877..1654 100 <- Minus
arm_3R 20024997..20025309 564..876 100 <- Minus
arm_3R 20025605..20025673 495..563 100 <- Minus
arm_3R 20045322..20045497 319..494 100 <- Minus
arm_3R 20045687..20045873 132..318 100 <- Minus
arm_3R 20045937..20046051 17..131 99   Minus

BS12659.pep Sequence

Translation from 16 to 1653

> BS12659.pep
MSRNKDKYDSANRRQQIFLSQEDIAAGKKTNWSGLEITGCVRNISPSLWE
FEHLTALYLNDNQLLRLPADVGMLTSLRTLDLSSNKLRSLPAELGELIQL
RELLLNNNFLRVLPYEIGKLFHLVILGLMGNPLQKEFMNIYNEPNGTQKL
LTYMLDNLSFTVNPPPQRPWLPLAKPNKTRPACIFTVMCYNVLCDKYATR
QMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYHFFLPEL
KNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQ
LAMANAEGSDNMLNRVMPKDNIGLAALLKVKENAWEPMSEVTQISQPLLV
CTAHIHWDPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKNDSNAVQL
LLCGDFNSLPDSGVVEFLGKGRVSMDHLDFKDMGYKSCLQRLLSNDTNEF
THSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGMVPLGLLGPVSND
WLRENKVVGCPHPHIPSDHFPLLVELELMHTASQQAPPNGLINRR*

BS12659.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
twin-PF 552 CG31137-PF 8..552 1..545 2897 100 Plus
twin-PC 567 CG31137-PC 23..567 1..545 2897 100 Plus
twin-PE 552 CG31137-PE 8..552 1..545 2897 100 Plus
twin-PB 545 CG31137-PB 1..545 1..545 2897 100 Plus
twin-PA 552 CG31137-PA 8..552 1..545 2897 100 Plus