Clone Sequence Records
BS12660.5prime Sequence
411 bp (411 high quality bases) assembled on 2006-10-13
> BS12660.5prime
GAAGTTATCAGTCGACATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGC
TCCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAAC
GGACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCAT
GGCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCT
TGGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTG
AAGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCAT
TGGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTG
CCACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCTAGAAG
CTTTCTAGACC
BS12660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4307-PA | 630 | Oscp-RA | 249..630 | 16..397 | 1910 | 100 | Plus |
CG4307-PB | 381 | Oscp-RB | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 319..701 | 16..398 | 1915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15266145..15266370 | 16..241 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 15266431..15266589 | 240..398 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:00:24 has no hits.
BS12660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:06 Download gff for
BS12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4307-PA | 245..630 | 10..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:51 Download gff for
BS12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 315..707 | 10..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:47 Download gff for
BS12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 315..707 | 10..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:47 Download gff for
BS12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15266433..15266595 | 242..407 | 97 | | Plus |
3R | 15266141..15266370 | 10..241 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:51 Download gff for
BS12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091863..11092092 | 10..241 | 98 | -> | Plus |
arm_3R | 11092155..11092317 | 242..407 | 97 | | Plus |
BS12660.3prime Sequence
411 bp (411 high quality bases) assembled on 2006-10-13
> BS12660.3prime
ATGGTCTAGAAAGCTTCTAGGCAGCGGTCTGGATGACATCGGTGTAGAGC
TTGACCTTAGTGGCAATGCTCATGTCGACGTACTTGTCGCCAATGGAAAC
GATCAGGCCACCAATGATGCTGGGGTCCACGCGGGAAGTGATCTTCAGAG
ACTCGTTGCCCTTCAGGAAAGACTTAAGGGCACCCTCCAGCTGCTTGCTC
TGGGACGCATCCAAGGGCTTGGCGGTGACCACCTCGCAGACGACCTCACC
GCGATGTGCGGCCATGATGGTCTTGTAGGCATTGATCACGGTGTCCAGCT
TCTTTAGACGTCCGTTGTCAGCCAGCAGACCCAACAGATTGACGGTGGCC
GGGGCGAAGCGGAGCTTCTCGGATGCCTCCTTCAGAGCGGTGGCCATGTC
GACTGATAACT
BS12660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4307-PA | 630 | Oscp-RA | 249..630 | 398..17 | 1910 | 100 | Minus |
CG4307-PB | 381 | Oscp-RB | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 319..701 | 398..16 | 1915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15266145..15266370 | 398..173 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 15266431..15266589 | 174..16 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:55:41 has no hits.
BS12660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:05 Download gff for
BS12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4307-PA | 245..630 | 17..404 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:15 Download gff for
BS12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 315..707 | 7..404 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:29 Download gff for
BS12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 315..707 | 7..404 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:29 Download gff for
BS12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15266141..15266370 | 173..404 | 98 | -> | Minus |
3R | 15266433..15266595 | 7..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:15 Download gff for
BS12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11092155..11092317 | 7..172 | 97 | | Minus |
arm_3R | 11091863..11092092 | 173..404 | 98 | -> | Minus |
BS12660.complete Sequence
413 bp assembled on 2006-11-01
GenBank Submission: FJ637256
> BS12660.complete
GAAGTTATCAGTCGACATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGC
TCCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAAC
GGACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCAT
GGCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCT
TGGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTG
AAGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCAT
TGGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTG
CCACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCTAGAAG
CTTTCTAGACCAT
BS12660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 630 | CG4307-PA | 249..630 | 16..397 | 1910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 319..701 | 16..398 | 1915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15266145..15266370 | 16..241 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 15266431..15266589 | 240..398 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:10:36 has no hits.
BS12660.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:05 Download gff for
BS12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 245..630 | 10..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:50 Download gff for
BS12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RB | 375..767 | 10..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:11 Download gff for
BS12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 320..700 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:05 Download gff for
BS12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RB | 375..767 | 10..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:33 Download gff for
BS12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 320..700 | 17..397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:33 Download gff for
BS12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15266146..15266370 | 17..241 | 100 | -> | Plus |
3R | 15266433..15266588 | 242..397 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:11 Download gff for
BS12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091868..11092092 | 17..241 | 100 | -> | Plus |
arm_3R | 11092155..11092310 | 242..397 | 100 | | Plus |
BS12660.pep Sequence
Translation from 16 to 396
> BS12660.pep
MATALKEASEKLRFAPATVNLLGLLADNGRLKKLDTVINAYKTIMAAHRG
EVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSIIGGLIV
SIGDKYVDMSIATKVKLYTDVIQTAA*
BS12660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-PA | 209 | CG4307-PA | 84..209 | 1..126 | 611 | 100 | Plus |