Clone Sequence Records
BS12662.3prime Sequence
918 bp (821 high quality bases) assembled on 2006-10-13
> BS12662.3prime
ATGGTCTAGAAAGCTTTCAGTAGCTGTTGAAGGCGCGGCTGTTGTGCCTG
GAAGCAGCTTTTCCCAGGCGTTGGACTGCCGACTCCTTCTTGTAACCTGG
CGACATAGCGATATCGCTATCCTCCGCGGCGGTTTCAGTCTCCATCGAGT
TCTTGGTGGTTCGCCTCTCGCCCATGACACCCTGCCCACGTGCCCTGCGC
TCAGTTTGAAGGCGAGACTCGCTTCGCGAGGATGACGGGAGCACCGAGTT
ACTGGGCGACGGCCAATTGGACTCTCTGGAGTTCCCCTCCTTATTATCCT
CATCTTCTTTCGCAGCTGGTTGGCTGTTCCCCGCATAAAAGCGTGGTGCA
GCCTGTCGTTCGACGGCCTGGTTTGCAGTTCCACGTCTTTTGCGCTTGTC
CCGGGGCTCCGGAAAGGTCCTTTGATGAGGCTTAAGCTGCGGCGTCGGAT
TCACTGACTCTACAATTTGCTTCTGATTTCCCCTTGCCGACCCGCGGAAG
CCGGCGTACTTCTGTTTAATCACCTGCTGTGAGGCACTAATCTGGGCCGC
ATTGTCCGACGACTCGTGGTAGAGTTCGTCCAACTGGGACTGTCCCACCT
TCCGGCGACTCTTGGCTCCGCCGAGGAAGGCCTGCTTTAAGAACTCGCGC
TCTGCTTTGGGCTGCTCGTACCACGAATCCGGCTCGGGTGTGTCCTCCTC
GTTCTTCCAGAGGCCCCTGGCCACTGTAATATCCGGACGCTCTGGTCGGA
TCATCGACACGTCCATAAGCTGATCCTCGGGCTTGTCCTCGGCGGCTGGC
TTTGGCTTGTGCCAACTTGTCTGCGGACGCAGCTCGCTGCGATGCTCTGA
GAACATCTCCTTAGCATTGGAGGTATACATCTCGTACCTGGGTCCGGTGC
CGAGATGAAACGGGGGAT
BS12662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31538-PA | 1692 | CG31538-RA | 791..1692 | 918..17 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31538-RA | 2158 | CG31538-RA | 1030..1931 | 918..17 | 4495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5275905..5276806 | 17..918 | 4495 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:45:52 has no hits.
BS12662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:06 Download gff for
BS12662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-PA | 791..1692 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:35:00 Download gff for
BS12662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 1030..1936 | 9..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:37 Download gff for
BS12662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 1030..1936 | 9..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:37 Download gff for
BS12662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5275900..5276806 | 9..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:35:00 Download gff for
BS12662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1101622..1102528 | 9..918 | 99 | | Plus |
BS12662.5prime Sequence
910 bp (726 high quality bases) assembled on 2006-10-13
> BS12662.5prime
GAAGTTATCAGTCGACATGAGTACTCATCAGTATAGCCTGGGGAGGCTGG
CCCGCCGAGGCTTCAGCCTGCGGATGAATCCGCTGGCCGGCACACTGCAA
AGGCTTTACCACACCCGTAGCAGGCCATGTGTGGCCCAGAGTGTGAGCCA
GGTGGGTGAACGGTCCAAGCCAACGTTGCAGCCCTACGACTTCGACCGAA
GCCGGGTGCGTAAAATTGCCGGCGAGAGGAAGACGCTGGTCGACCAGGTG
CGGGGCATGAGCACAAGCCTGGGACATGCCAAGTTGGTGCCCCAAAAGAT
GTACGGCAAGACGAGGCTGTTCTCCTCCGGAAGCACCCTCTACAGTCGCT
TGCAGCATCTGGAACAGCAGAACGAGGAATATTCGAGTCGAGAGTCCCAG
CCGACGCACACCACAGCCTCATTGTCGGCCACCCAGCAGAGGTACAATCA
GGCGGCAGGATTCGGCAAGGGCATGGCCATACAGACGGCCAAAGACATCA
GCCAGTCCATCCAGGAGGAGCTGATGGTGGTGGACGCCGACACGCGCGAC
ATGCTTACCTGCGATACCAGTCGCAAGGCGATGCGCGACTACCACGACCA
TATGGCCAAGCGGTCGAAGAACTCTGTCGATCCCATGCAGGGTTGGAAGC
ATCCAAAGAACCTTAAGTATCTCTCCGATATCCCGGCCGATAGCAGTACC
AGTAGCCAAGCAGCCCAACATGACGATGAAGCCCAACGGCAGATGAGGCC
ACGTCGCCGCCAGATGGTCATGGGTCATGCCATTCGCAATTTCGACGCCC
TAGCCAATCCCCCGCTTCATCTCGGCACCGGACCCAGGTACGAGATGTAT
ACCTCCAATGCTAAGGAGATGTTCTCAGAGCATCGCAGCGAGCTGCGTCC
GCAGACAATT
BS12662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31538-PA | 1692 | CG31538-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31538-RA | 2158 | CG31538-RA | 240..1131 | 17..908 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5276705..5277596 | 908..17 | 4460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:12:32 has no hits.
BS12662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:07 Download gff for
BS12662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:25 Download gff for
BS12662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 240..1133 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:24 Download gff for
BS12662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 240..1133 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:24 Download gff for
BS12662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5276702..5277596 | 17..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:25 Download gff for
BS12662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1102424..1103318 | 17..910 | 99 | | Minus |
BS12662.complete Sequence
1724 bp assembled on 2007-10-25
GenBank Submission: FJ637257
> BS12662.complete
GAAGTTATCAGTCGACATGAGTACTCATCAGTATAGCCTGGGGAGGCTGG
CCCGCCGAGGCTTCAGCCTGCGGATGAATCCGCTGGCCGGCACACTGCAA
AGGCTTTACCACACCCGTAGCAGGCCATGTGTGGCCCAGAGTGTGAGCCA
GGTGGGTGAACGGTCCAAGCCAACGTTGCAGCCCTACGACTTCGACCGAA
GCCGGGTGCGTAAAATTGCCGGCGAGAGGAAGACGCTGGTCGACCAGGTG
CGGGGCATGAGCACAAGCCTGGGACATGCCAAGTTGGTGCCCCAAAAGAT
GTACGGCAAGACGAGGCTGTTCTCCTCCGGAAGCACCCTCTACAGTCGCT
TGCAGCATCTGGAACAGCAGAACGAGGAATATTCGAGTCGAGAGTCCCAG
CCGACGCACACCACAGCCTCATTGTCGGCCACCCAGCAGAGGTACAATCA
GGCGGCAGGATTCGGCAAGGGCATGGCCATACAGACGGCCAAAGACATCA
GCCAGTCCATCCAGGAGGAGCTGATGGTGGTGGACGCCGACACGCGCGAC
ATGCTTACCTGCGATACCAGTCGCAAGGCGATGCGCGACTACCACGACCA
TATGGCCAAGCGGTCGAAGAACTCTGTCGATCCCATGCAGGGTTGGAAGC
ATCCAAAGAACCTTAAGTATCTCTCCGATATCCCGGCCGATAGCAGTACC
AGTAGCCAAGCAGCCCAACATGACGATGAAGCCCAACGGCAGATGAGGCC
ACGTCGCCGCCAGATGGTCATGGGTCATGCCATTCGCAATTTCGACGCCC
TAGCCAATCCCCCGCTTCATCTCGGCACCGGACCCAGGTACGAGATGTAT
ACCTCCAATGCTAAGGAGATGTTCTCAGAGCATCGCAGCGAGCTGCGTCC
GCAGACAAGTTGGCACAAGCCAAAGCCAGCCGCCGAGGACAAGCCCGAGG
ATCAGCTTATGGACGTGTCGATGATCCGACCAGAGCGTCCGGATATTACA
GTGGCCAGGGGCCTCTGGAAGAACGAGGAGGACACACCCGAGCCGGATTC
GTGGTACGAGCAGCCCAAAGCAGAGCGCGAGTTCTTAAAGCAGGCCTTCC
TCGGCGGAGCCAAGAGTCGCCGGAAGGTGGGACAGTCCCAGTTGGACGAA
CTCTACCACGAGTCGTCGGACAATGCGGCCCAGATTAGTGCCTCACAGCA
GGTGATTAAACAGAAGTACGCCGGCTTCCGCGGGTCGGCAAGGGGAAATC
AGAAGCAAATTGTAGAGTCAGTGAATCCGACGCCGCAGCTTAAGCCTCAT
CAAAGGACCTTTCCGGAGCCCCGGGACAAGCGCAAAAGACGTGGAACTGC
AAACCAGGCCGTCGAACGACAGGCTGCACCACGCTTTTATGCGGGGAACA
GCCAACCAGCTGCGAAAGAAGATGAGGATAATAAGGAGGGGAACTCCAGA
GAGTCCAATTGGCCGTCGCCCAGTAACTCGGTGCTCCCGTCATCCTCGCG
AAGCGAGTCTCGCCTTCAAACTGAGCGCAGGGCACGTGGGCAGGGTGTCA
TGGGCGAGAGGCGAACCACCAAGAACTCGATGGAGACTGAAACCGCCGCG
GAGGATAGCGATATCGCTATGTCGCCAGGTTACAAGAAGGAGTCGGCAGT
CCAACGCCTGGGAAAAGCTGCTTCCAGGCACAACAGCCGCGCCTTCAACA
GCTACTGAAAGCTTTCTAGACCAT
BS12662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31538-RA | 1692 | CG31538-PA | 1..1692 | 17..1708 | 8460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31538-RA | 2158 | CG31538-RA | 240..1931 | 17..1708 | 8460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5275905..5277596 | 1708..17 | 8460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:06:26 has no hits.
BS12662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:18 Download gff for
BS12662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 1..1692 | 17..1708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:15 Download gff for
BS12662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 240..1936 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:06 Download gff for
BS12662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 240..1930 | 17..1707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:08 Download gff for
BS12662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 240..1930 | 17..1707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:38 Download gff for
BS12662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31538-RA | 240..1930 | 17..1707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:38 Download gff for
BS12662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5275906..5277596 | 17..1707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:06 Download gff for
BS12662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1101628..1103318 | 17..1707 | 100 | | Minus |
BS12662.pep Sequence
Translation from 16 to 1707
> BS12662.pep
MSTHQYSLGRLARRGFSLRMNPLAGTLQRLYHTRSRPCVAQSVSQVGERS
KPTLQPYDFDRSRVRKIAGERKTLVDQVRGMSTSLGHAKLVPQKMYGKTR
LFSSGSTLYSRLQHLEQQNEEYSSRESQPTHTTASLSATQQRYNQAAGFG
KGMAIQTAKDISQSIQEELMVVDADTRDMLTCDTSRKAMRDYHDHMAKRS
KNSVDPMQGWKHPKNLKYLSDIPADSSTSSQAAQHDDEAQRQMRPRRRQM
VMGHAIRNFDALANPPLHLGTGPRYEMYTSNAKEMFSEHRSELRPQTSWH
KPKPAAEDKPEDQLMDVSMIRPERPDITVARGLWKNEEDTPEPDSWYEQP
KAEREFLKQAFLGGAKSRRKVGQSQLDELYHESSDNAAQISASQQVIKQK
YAGFRGSARGNQKQIVESVNPTPQLKPHQRTFPEPRDKRKRRGTANQAVE
RQAAPRFYAGNSQPAAKEDEDNKEGNSRESNWPSPSNSVLPSSSRSESRL
QTERRARGQGVMGERRTTKNSMETETAAEDSDIAMSPGYKKESAVQRLGK
AASRHNSRAFNSY*
BS12662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31538-PA | 563 | CG31538-PA | 1..563 | 1..563 | 2919 | 100 | Plus |
