Clone Sequence Records
BS12663.3prime Sequence
905 bp (781 high quality bases) assembled on 2006-10-13
> BS12663.3prime
ATGGTCTAGAAAGCTTTCATGGCAGCTCGTAGGCACGTTTCTTAAGGCTC
AGCAATTTGTTGGCATGGCGACGTAGATTCTCTTGGTTGGGATTGCGCAG
GACTTCAGCCGCCGCCTCCTTAATCATGCCCTCGATGCTCTGCAGCAGCC
ATTCCTTATTGGGGCACGTAATAGCCAGACGGTAATCGCCATCCGGTGTC
CGCGACACGTTCCACTCTGCGGCGGAGTCGTCGCAGTCTCGGCTATCATT
GCTCTCCGTGTCCTCCGTCTTTATAGCAATGCACCGACGCACCTTGGACG
GCTCATCTTCTTCGGCGGCTTCCGGCACGGACTTGCGCTTCTTGCTATTG
AGCTGGCGTTCGTCTTGGATGCGATCCCGCTTGGGGCACGTACATATTTT
AACATGTATAACATGCTGTCCCACGATATCGCCGCATGCTTTCTCCAGGC
AGAAGACTAAGGAAGTTTCTTTTCGCCCGATACACGAGTTTTGGCAGACG
AACTTGAAGGCCAGGGTCTGGCGCGTGAGCCCACTGCGGGTTACAGACCG
GCTCATGTTCAGGGGGACTACAACGGAAAAACGCTCGGAAATTCCCTTGC
CCTGAGCATTTCCACAATATACACTGTTGGGATTCTCGCTGCGCAGCAAG
CTCTCGCGCATTTTTGCGTTATTGGCCGTCAAAGGCTCAACGCTAAGGTG
ATTTTGACAGCGGACCACGGGAGCACTCACATCATTGGAGAAGCAAAGGA
ACACACGCAAATTAAGTGGTTGGATGGGCATTTTAGACTTGAACTGAACG
TCCACGTTGAAGGCCTTGTTCATCCGGATGTAGAGCTTGTTCAGCGGAAT
CGAGTACATCCAAAGAGACTTGGGCGGCTCATCCAGAACCATGCTGAAGC
AATAA
BS12663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33336-PA | 1158 | p53-RA | 270..1158 | 905..17 | 4445 | 100 | Minus |
CG33336-PB | 1488 | p53-RB | 600..1488 | 905..17 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RE | 1324 | CG33336-RE | 128..1016 | 905..17 | 4445 | 100 | Minus |
p53-RC | 2095 | CG33336-RC | 899..1787 | 905..17 | 4445 | 100 | Minus |
p53-RB | 1870 | CG33336-RB | 674..1562 | 905..17 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23050047..23050442 | 40..435 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 23050504..23050750 | 435..681 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 23050815..23051038 | 682..905 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:07:31 has no hits.
BS12663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:08 Download gff for
BS12663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33336-PB | 602..1488 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:26 Download gff for
BS12663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 674..1567 | 8..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:42 Download gff for
BS12663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 674..1567 | 8..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:42 Download gff for
BS12663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23050504..23050750 | 435..681 | 100 | <- | Plus |
3R | 23050815..23051038 | 682..905 | 100 | | Plus |
3R | 23050047..23050441 | 40..434 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:26 Download gff for
BS12663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18875769..18876163 | 40..434 | 100 | <- | Plus |
arm_3R | 18876226..18876472 | 435..681 | 100 | <- | Plus |
arm_3R | 18876537..18876760 | 682..905 | 100 | | Plus |
BS12663.5prime Sequence
846 bp (797 high quality bases) assembled on 2006-10-13
> BS12663.5prime
GAAGTTATCAGTCGACATGAGTCTTCACAAGTCCGCGTCGTTTAGCTTGA
CTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTCGCACAATT
TTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGCAACGAAGT
TTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTTCAACTTGC
CGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGGCTACGCCT
GTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATGCAGTTCAC
GAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAATAACAAAA
TTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATTCCGAGGAT
GACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACGGTGGAGGT
ATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCAGGGATTAA
ACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGCGCGAAATG
ATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAGCTAGAGAA
TCACAACATCGGTGGTTATTGCTTCAGCATGGTTCTGGATGAGCCGCCCA
AGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACATCCGGATG
AACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATGCCCATCCA
ACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGTGAGTGCTC
CCGTGGTCCGCTGTCAAAATCACCTTAGCGTTGAGCCTTTGACGGC
BS12663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33336-PB | 1488 | p53-RB | 1..830 | 17..846 | 4150 | 100 | Plus |
CG33336-PA | 1158 | p53-RA | 38..500 | 384..846 | 2315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RB | 1870 | CG33336-RB | 74..904 | 16..846 | 4155 | 100 | Plus |
p53-RC | 2095 | CG33336-RC | 667..1129 | 384..846 | 2315 | 100 | Plus |
p53-RA | 1577 | CG33336-RA | 149..611 | 384..846 | 2315 | 100 | Plus |
p53-RC | 2095 | CG33336-RC | 74..442 | 16..384 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23053582..23053905 | 384..61 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 23050815..23051127 | 839..527 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23053118..23053200 | 466..384 | 415 | 100 | Minus |
3R | 32079331 | 3R | 23053965..23054009 | 60..16 | 225 | 100 | Minus |
3R | 32079331 | 3R | 23053012..23053048 | 502..466 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:53:36 has no hits.
BS12663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:08 Download gff for
BS12663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33336-PB | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:56 Download gff for
BS12663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 70..904 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:36 Download gff for
BS12663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 70..904 | 9..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:36 Download gff for
BS12663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23050815..23051124 | 530..839 | 100 | <- | Minus |
3R | 23052922..23052948 | 503..529 | 100 | <- | Minus |
3R | 23053012..23053048 | 466..502 | 100 | <- | Minus |
3R | 23053119..23053199 | 385..465 | 100 | <- | Minus |
3R | 23053582..23053905 | 61..384 | 100 | <- | Minus |
3R | 23053965..23054013 | 9..60 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:56 Download gff for
BS12663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18876537..18876846 | 530..839 | 100 | <- | Minus |
arm_3R | 18878644..18878670 | 503..529 | 100 | <- | Minus |
arm_3R | 18878734..18878770 | 466..502 | 100 | <- | Minus |
arm_3R | 18878841..18878921 | 385..465 | 100 | <- | Minus |
arm_3R | 18879304..18879627 | 61..384 | 100 | <- | Minus |
arm_3R | 18879687..18879735 | 9..60 | 94 | | Minus |
BS12663.complete Sequence
1520 bp assembled on 2006-11-01
GenBank Submission: FJ637258
> BS12663.complete
GAAGTTATCAGTCGACATGAGTCTTCACAAGTCCGCGTCGTTTAGCTTGA
CTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTCGCACAATT
TTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGCAACGAAGT
TTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTTCAACTTGC
CGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGGCTACGCCT
GTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATGCAGTTCAC
GAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAATAACAAAA
TTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATTCCGAGGAT
GACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACGGTGGAGGT
ATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCAGGGATTAA
ACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGCGCGAAATG
ATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAGCTAGAGAA
TCACAACATCGGTGGTTATTGCTTCAGCATGGTTCTGGATGAGCCGCCCA
AGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACATCCGGATG
AACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATGCCCATCCA
ACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGTGAGTGCTC
CCGTGGTCCGCTGTCAAAATCACCTTAGCGTTGAGCCTTTGACGGCCAAT
AACGCAAAAATGCGCGAGAGCTTGCTGCGCAGCGAGAATCCCAACAGTGT
ATATTGTGGAAATGCTCAGGGCAAGGGAATTTCCGAGCGTTTTTCCGTTG
TAGTCCCCCTGAACATGAGCCGGTCTGTAACCCGCAGTGGGCTCACGCGC
CAGACCCTGGCCTTCAAGTTCGTCTGCCAAAACTCGTGTATCGGGCGAAA
AGAAACTTCCTTAGTCTTCTGCCTGGAGAAAGCATGCGGCGATATCGTGG
GACAGCATGTTATACATGTTAAAATATGTACGTGCCCCAAGCGGGATCGC
ATCCAAGACGAACGCCAGCTCAATAGCAAGAAGCGCAAGTCCGTGCCGGA
AGCCGCCGAAGAAGATGAGCCGTCCAAGGTGCGTCGGTGCATTGCTATAA
AGACGGAGGACACGGAGAGCAATGATAGCCGAGACTGCGACGACTCCGCC
GCAGAGTGGAACGTGTCGCGGACACCGGATGGCGATTACCGTCTGGCTAT
TACGTGCCCCAATAAGGAATGGCTGCTGCAGAGCATCGAGGGCATGATTA
AGGAGGCGGCGGCTGAAGTCCTGCGCAATCCCAACCAAGAGAATCTACGT
CGCCATGCCAACAAATTGCTGAGCCTTAAGAAACGTGCCTACGAGCTGCC
ATGAAAGCTTTCTAGACCAT
BS12663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RB | 1488 | CG33336-PB | 1..1488 | 17..1504 | 7440 | 100 | Plus |
p53-RC | 1158 | CG33336-PC | 38..1158 | 384..1504 | 5605 | 100 | Plus |
p53-RA | 1158 | CG33336-PA | 38..1158 | 384..1504 | 5605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RB | 1870 | CG33336-RB | 74..1562 | 16..1504 | 7445 | 100 | Plus |
p53-RC | 2095 | CG33336-RC | 667..1787 | 384..1504 | 5605 | 100 | Plus |
p53-RA | 1577 | CG33336-RA | 149..1269 | 384..1504 | 5605 | 100 | Plus |
p53-RC | 2095 | CG33336-RC | 74..442 | 16..384 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23050047..23050442 | 1481..1086 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 23053582..23053905 | 384..61 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 23050815..23051127 | 839..527 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23050504..23050750 | 1086..840 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 23053118..23053200 | 466..384 | 415 | 100 | Minus |
3R | 32079331 | 3R | 23053965..23054009 | 60..16 | 225 | 100 | Minus |
3R | 32079331 | 3R | 23053012..23053048 | 502..466 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:18:34 has no hits.
BS12663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:24 Download gff for
BS12663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 1..1488 | 17..1504 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:44 Download gff for
BS12663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 70..1567 | 9..1513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:35 Download gff for
BS12663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 75..1561 | 17..1503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:25 Download gff for
BS12663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 70..1567 | 9..1513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:59 Download gff for
BS12663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 75..1561 | 17..1503 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:59 Download gff for
BS12663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23049966..23049987 | 1482..1503 | 100 | <- | Minus |
3R | 23050047..23050441 | 1087..1481 | 100 | <- | Minus |
3R | 23050504..23050750 | 840..1086 | 100 | <- | Minus |
3R | 23050815..23051124 | 530..839 | 100 | <- | Minus |
3R | 23052922..23052948 | 503..529 | 100 | <- | Minus |
3R | 23053012..23053048 | 466..502 | 100 | <- | Minus |
3R | 23053119..23053199 | 385..465 | 100 | <- | Minus |
3R | 23053582..23053905 | 61..384 | 100 | <- | Minus |
3R | 23053965..23054008 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:35 Download gff for
BS12663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18875688..18875709 | 1482..1503 | 100 | <- | Minus |
arm_3R | 18875769..18876163 | 1087..1481 | 100 | <- | Minus |
arm_3R | 18876226..18876472 | 840..1086 | 100 | <- | Minus |
arm_3R | 18876537..18876846 | 530..839 | 100 | <- | Minus |
arm_3R | 18878644..18878670 | 503..529 | 100 | <- | Minus |
arm_3R | 18878734..18878770 | 466..502 | 100 | <- | Minus |
arm_3R | 18878841..18878921 | 385..465 | 100 | <- | Minus |
arm_3R | 18879304..18879627 | 61..384 | 100 | <- | Minus |
arm_3R | 18879687..18879730 | 17..60 | 100 | | Minus |
BS12663.pep Sequence
Translation from 16 to 1503
> BS12663.pep
MSLHKSASFSLTFNQNTSIVSRSNSRTIFEAFKEFLDFWDIGNEVSAESA
VRVSSNGAFNLPQSFGNESNEYAHLATPVDPAYGGNNTNNMMQFTNNLEI
LANNNSDGNNKINACNKFVCHKGTDSEDDSTEVDIKEDIPKTVEVSGSEL
TTEPMAFLQGLNSGNLMQFSQQSVLREMMLQDIQIQANTLPKLENHNIGG
YCFSMVLDEPPKSLWMYSIPLNKLYIRMNKAFNVDVQFKSKMPIQPLNLR
VFLCFSNDVSAPVVRCQNHLSVEPLTANNAKMRESLLRSENPNSVYCGNA
QGKGISERFSVVVPLNMSRSVTRSGLTRQTLAFKFVCQNSCIGRKETSLV
FCLEKACGDIVGQHVIHVKICTCPKRDRIQDERQLNSKKRKSVPEAAEED
EPSKVRRCIAIKTEDTESNDSRDCDDSAAEWNVSRTPDGDYRLAITCPNK
EWLLQSIEGMIKEAAAEVLRNPNQENLRRHANKLLSLKKRAYELP*
BS12663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-PB | 495 | CG33336-PB | 1..495 | 1..495 | 2581 | 100 | Plus |
p53-PC | 385 | CG33336-PC | 12..385 | 122..495 | 1935 | 99.5 | Plus |
p53-PA | 385 | CG33336-PA | 12..385 | 122..495 | 1935 | 99.5 | Plus |
p53-PE | 334 | CG33336-PE | 10..334 | 171..495 | 1695 | 99.7 | Plus |