Clone BS12663 Report

Search the DGRC for BS12663

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptp53-RB
Protein status:BS12663.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12663.3prime Sequence

905 bp (781 high quality bases) assembled on 2006-10-13

> BS12663.3prime
ATGGTCTAGAAAGCTTTCATGGCAGCTCGTAGGCACGTTTCTTAAGGCTC
AGCAATTTGTTGGCATGGCGACGTAGATTCTCTTGGTTGGGATTGCGCAG
GACTTCAGCCGCCGCCTCCTTAATCATGCCCTCGATGCTCTGCAGCAGCC
ATTCCTTATTGGGGCACGTAATAGCCAGACGGTAATCGCCATCCGGTGTC
CGCGACACGTTCCACTCTGCGGCGGAGTCGTCGCAGTCTCGGCTATCATT
GCTCTCCGTGTCCTCCGTCTTTATAGCAATGCACCGACGCACCTTGGACG
GCTCATCTTCTTCGGCGGCTTCCGGCACGGACTTGCGCTTCTTGCTATTG
AGCTGGCGTTCGTCTTGGATGCGATCCCGCTTGGGGCACGTACATATTTT
AACATGTATAACATGCTGTCCCACGATATCGCCGCATGCTTTCTCCAGGC
AGAAGACTAAGGAAGTTTCTTTTCGCCCGATACACGAGTTTTGGCAGACG
AACTTGAAGGCCAGGGTCTGGCGCGTGAGCCCACTGCGGGTTACAGACCG
GCTCATGTTCAGGGGGACTACAACGGAAAAACGCTCGGAAATTCCCTTGC
CCTGAGCATTTCCACAATATACACTGTTGGGATTCTCGCTGCGCAGCAAG
CTCTCGCGCATTTTTGCGTTATTGGCCGTCAAAGGCTCAACGCTAAGGTG
ATTTTGACAGCGGACCACGGGAGCACTCACATCATTGGAGAAGCAAAGGA
ACACACGCAAATTAAGTGGTTGGATGGGCATTTTAGACTTGAACTGAACG
TCCACGTTGAAGGCCTTGTTCATCCGGATGTAGAGCTTGTTCAGCGGAAT
CGAGTACATCCAAAGAGACTTGGGCGGCTCATCCAGAACCATGCTGAAGC
AATAA

BS12663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33336-PA 1158 p53-RA 270..1158 905..17 4445 100 Minus
CG33336-PB 1488 p53-RB 600..1488 905..17 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RE 1324 CG33336-RE 128..1016 905..17 4445 100 Minus
p53-RC 2095 CG33336-RC 899..1787 905..17 4445 100 Minus
p53-RB 1870 CG33336-RB 674..1562 905..17 4445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23050047..23050442 40..435 1980 100 Plus
3R 32079331 3R 23050504..23050750 435..681 1235 100 Plus
3R 32079331 3R 23050815..23051038 682..905 1120 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:07:31 has no hits.

BS12663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:08 Download gff for BS12663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33336-PB 602..1488 17..903 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:26 Download gff for BS12663.3prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 674..1567 8..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:42 Download gff for BS12663.3prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 674..1567 8..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:42 Download gff for BS12663.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23050504..23050750 435..681 100 <- Plus
3R 23050815..23051038 682..905 100   Plus
3R 23050047..23050441 40..434 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:26 Download gff for BS12663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18875769..18876163 40..434 100 <- Plus
arm_3R 18876226..18876472 435..681 100 <- Plus
arm_3R 18876537..18876760 682..905 100   Plus

BS12663.5prime Sequence

846 bp (797 high quality bases) assembled on 2006-10-13

> BS12663.5prime
GAAGTTATCAGTCGACATGAGTCTTCACAAGTCCGCGTCGTTTAGCTTGA
CTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTCGCACAATT
TTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGCAACGAAGT
TTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTTCAACTTGC
CGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGGCTACGCCT
GTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATGCAGTTCAC
GAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAATAACAAAA
TTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATTCCGAGGAT
GACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACGGTGGAGGT
ATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCAGGGATTAA
ACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGCGCGAAATG
ATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAGCTAGAGAA
TCACAACATCGGTGGTTATTGCTTCAGCATGGTTCTGGATGAGCCGCCCA
AGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACATCCGGATG
AACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATGCCCATCCA
ACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGTGAGTGCTC
CCGTGGTCCGCTGTCAAAATCACCTTAGCGTTGAGCCTTTGACGGC

BS12663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG33336-PB 1488 p53-RB 1..830 17..846 4150 100 Plus
CG33336-PA 1158 p53-RA 38..500 384..846 2315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RB 1870 CG33336-RB 74..904 16..846 4155 100 Plus
p53-RC 2095 CG33336-RC 667..1129 384..846 2315 100 Plus
p53-RA 1577 CG33336-RA 149..611 384..846 2315 100 Plus
p53-RC 2095 CG33336-RC 74..442 16..384 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23053582..23053905 384..61 1620 100 Minus
3R 32079331 3R 23050815..23051127 839..527 1565 100 Minus
3R 32079331 3R 23053118..23053200 466..384 415 100 Minus
3R 32079331 3R 23053965..23054009 60..16 225 100 Minus
3R 32079331 3R 23053012..23053048 502..466 185 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:53:36 has no hits.

BS12663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:08 Download gff for BS12663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33336-PB 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:56 Download gff for BS12663.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..904 9..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:36 Download gff for BS12663.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..904 9..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:36 Download gff for BS12663.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23050815..23051124 530..839 100 <- Minus
3R 23052922..23052948 503..529 100 <- Minus
3R 23053012..23053048 466..502 100 <- Minus
3R 23053119..23053199 385..465 100 <- Minus
3R 23053582..23053905 61..384 100 <- Minus
3R 23053965..23054013 9..60 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:56 Download gff for BS12663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18876537..18876846 530..839 100 <- Minus
arm_3R 18878644..18878670 503..529 100 <- Minus
arm_3R 18878734..18878770 466..502 100 <- Minus
arm_3R 18878841..18878921 385..465 100 <- Minus
arm_3R 18879304..18879627 61..384 100 <- Minus
arm_3R 18879687..18879735 9..60 94   Minus

BS12663.complete Sequence

1520 bp assembled on 2006-11-01

GenBank Submission: FJ637258

> BS12663.complete
GAAGTTATCAGTCGACATGAGTCTTCACAAGTCCGCGTCGTTTAGCTTGA
CTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTCGCACAATT
TTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGCAACGAAGT
TTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTTCAACTTGC
CGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGGCTACGCCT
GTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATGCAGTTCAC
GAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAATAACAAAA
TTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATTCCGAGGAT
GACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACGGTGGAGGT
ATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCAGGGATTAA
ACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGCGCGAAATG
ATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAGCTAGAGAA
TCACAACATCGGTGGTTATTGCTTCAGCATGGTTCTGGATGAGCCGCCCA
AGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACATCCGGATG
AACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATGCCCATCCA
ACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGTGAGTGCTC
CCGTGGTCCGCTGTCAAAATCACCTTAGCGTTGAGCCTTTGACGGCCAAT
AACGCAAAAATGCGCGAGAGCTTGCTGCGCAGCGAGAATCCCAACAGTGT
ATATTGTGGAAATGCTCAGGGCAAGGGAATTTCCGAGCGTTTTTCCGTTG
TAGTCCCCCTGAACATGAGCCGGTCTGTAACCCGCAGTGGGCTCACGCGC
CAGACCCTGGCCTTCAAGTTCGTCTGCCAAAACTCGTGTATCGGGCGAAA
AGAAACTTCCTTAGTCTTCTGCCTGGAGAAAGCATGCGGCGATATCGTGG
GACAGCATGTTATACATGTTAAAATATGTACGTGCCCCAAGCGGGATCGC
ATCCAAGACGAACGCCAGCTCAATAGCAAGAAGCGCAAGTCCGTGCCGGA
AGCCGCCGAAGAAGATGAGCCGTCCAAGGTGCGTCGGTGCATTGCTATAA
AGACGGAGGACACGGAGAGCAATGATAGCCGAGACTGCGACGACTCCGCC
GCAGAGTGGAACGTGTCGCGGACACCGGATGGCGATTACCGTCTGGCTAT
TACGTGCCCCAATAAGGAATGGCTGCTGCAGAGCATCGAGGGCATGATTA
AGGAGGCGGCGGCTGAAGTCCTGCGCAATCCCAACCAAGAGAATCTACGT
CGCCATGCCAACAAATTGCTGAGCCTTAAGAAACGTGCCTACGAGCTGCC
ATGAAAGCTTTCTAGACCAT

BS12663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RB 1488 CG33336-PB 1..1488 17..1504 7440 100 Plus
p53-RC 1158 CG33336-PC 38..1158 384..1504 5605 100 Plus
p53-RA 1158 CG33336-PA 38..1158 384..1504 5605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RB 1870 CG33336-RB 74..1562 16..1504 7445 100 Plus
p53-RC 2095 CG33336-RC 667..1787 384..1504 5605 100 Plus
p53-RA 1577 CG33336-RA 149..1269 384..1504 5605 100 Plus
p53-RC 2095 CG33336-RC 74..442 16..384 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23050047..23050442 1481..1086 1980 100 Minus
3R 32079331 3R 23053582..23053905 384..61 1620 100 Minus
3R 32079331 3R 23050815..23051127 839..527 1565 100 Minus
3R 32079331 3R 23050504..23050750 1086..840 1235 100 Minus
3R 32079331 3R 23053118..23053200 466..384 415 100 Minus
3R 32079331 3R 23053965..23054009 60..16 225 100 Minus
3R 32079331 3R 23053012..23053048 502..466 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:18:34 has no hits.

BS12663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:24 Download gff for BS12663.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1488 17..1504 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:44 Download gff for BS12663.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..1567 9..1513 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:35 Download gff for BS12663.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 75..1561 17..1503 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:25 Download gff for BS12663.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..1567 9..1513 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:59 Download gff for BS12663.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 75..1561 17..1503 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:59 Download gff for BS12663.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23049966..23049987 1482..1503 100 <- Minus
3R 23050047..23050441 1087..1481 100 <- Minus
3R 23050504..23050750 840..1086 100 <- Minus
3R 23050815..23051124 530..839 100 <- Minus
3R 23052922..23052948 503..529 100 <- Minus
3R 23053012..23053048 466..502 100 <- Minus
3R 23053119..23053199 385..465 100 <- Minus
3R 23053582..23053905 61..384 100 <- Minus
3R 23053965..23054008 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:35 Download gff for BS12663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18875688..18875709 1482..1503 100 <- Minus
arm_3R 18875769..18876163 1087..1481 100 <- Minus
arm_3R 18876226..18876472 840..1086 100 <- Minus
arm_3R 18876537..18876846 530..839 100 <- Minus
arm_3R 18878644..18878670 503..529 100 <- Minus
arm_3R 18878734..18878770 466..502 100 <- Minus
arm_3R 18878841..18878921 385..465 100 <- Minus
arm_3R 18879304..18879627 61..384 100 <- Minus
arm_3R 18879687..18879730 17..60 100   Minus

BS12663.pep Sequence

Translation from 16 to 1503

> BS12663.pep
MSLHKSASFSLTFNQNTSIVSRSNSRTIFEAFKEFLDFWDIGNEVSAESA
VRVSSNGAFNLPQSFGNESNEYAHLATPVDPAYGGNNTNNMMQFTNNLEI
LANNNSDGNNKINACNKFVCHKGTDSEDDSTEVDIKEDIPKTVEVSGSEL
TTEPMAFLQGLNSGNLMQFSQQSVLREMMLQDIQIQANTLPKLENHNIGG
YCFSMVLDEPPKSLWMYSIPLNKLYIRMNKAFNVDVQFKSKMPIQPLNLR
VFLCFSNDVSAPVVRCQNHLSVEPLTANNAKMRESLLRSENPNSVYCGNA
QGKGISERFSVVVPLNMSRSVTRSGLTRQTLAFKFVCQNSCIGRKETSLV
FCLEKACGDIVGQHVIHVKICTCPKRDRIQDERQLNSKKRKSVPEAAEED
EPSKVRRCIAIKTEDTESNDSRDCDDSAAEWNVSRTPDGDYRLAITCPNK
EWLLQSIEGMIKEAAAEVLRNPNQENLRRHANKLLSLKKRAYELP*

BS12663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
p53-PB 495 CG33336-PB 1..495 1..495 2581 100 Plus
p53-PC 385 CG33336-PC 12..385 122..495 1935 99.5 Plus
p53-PA 385 CG33336-PA 12..385 122..495 1935 99.5 Plus
p53-PE 334 CG33336-PE 10..334 171..495 1695 99.7 Plus