Clone Sequence Records
BS12664.complete Sequence
1904 bp assembled on 2009-12-07
GenBank Submission: KX806341
> BS12664.complete
GAAGTTATCAGTCGACATGTGTCAATCCGGCGGCCAGATGCTGTGCGAGA
TCAAGAACATGGCTCTTTCGGGCGATCCGGAGCTAGATGGCGAGATCCGC
AAGTGGATTCGATGGGACAAATGCGCTAGCACCGCCTGCCAAATCATGGA
CGCAGTTCGGGCGAAAGACTGGGACACGCTGCGCAAGAGACTGTGCACCC
GCATCAGCTTCGGCACGGCCGGATTGAGGGCTTGCATGCGGGCTGGCTTT
GACTCCATGAACGAGCTGGTGGTGATTCAGACGGCGCAGGGCTTATGTGA
GTACATCAAGGAACAGTACCCTGATCCGGCGGACTGGTCCGGACGTGGCA
TTGTCTTCGGGTATGACGGTCGTTACAATAGCCACCGCTTCGCCGAGCTC
TCGGCCATTGTGTTCCTAAACAACGACTTTAAGGTGTGGTTGTTCAAGCG
CTACGTGGCCACGCCCATGGTGCCCTTTGCCATCTTGAGGCTACAGTGCT
TGGCCGGCGTCATGGTGACCGCCTCGCACAATCCCAAGGAGGACAATGGC
TACAAGGTGTACTGGACCAATGGAGCCCAAATCATTCCGCCGCACGACGA
GGGCATACAGGAGTCGATTCTAAACAATTTGGAGCCCAAGGGCTCATCCT
GGGACGATTCGGCGATGTGCTCGAACACAATGCTGGAGGATCCGTACGAT
ATCGTTGTGCCGCCCTATTTCGATATACTGAAGAAACAACTGCCTTGCAC
TTCGCTGGAGGCCAACGGAAGGTGCTCTCTCTCATTCACCTATACGGCCA
TGCACGGCGTGGGCTATGCATTTGTGAAGCAGGCTTTCGCCCGAATCAAT
CTTAAGCCTTTCATATCGGTGTGCGAGCAGCAGGAGCCGGACCCAGAGTT
CCCCACCACTCCGATGCCCAACCCGGAGGAGGGAAAGACCTCGTTGGATT
TATCAATTAAAACGGCGAAAGCCAACAGCAGCCAAATAATTTTAGCCAAC
GATCCGGATGCCGACCGCCTGGCAGTTGCCGAAGTACGCGAGGATGGTAG
CTATAAGCTGTTCAGCGGCAACGAAGTGGGCGCTCTTTTGGGCTGGTGGT
CTCTGGAGCTGCACAAAATGCGAGAACCCGACTGCGATGTTAGTAACTGT
GTGATGATAGCCAGTACGGTGAGCTCAAAGATTCTCAGGGCCATGGCCGA
GCGGGAAGGCTTCCAGTTCTTCGAAACGCTGACTGGATTCAAGTGGATGG
GTAACAAGGCAATCGAGCTACAGCAGGCGGGAAAAACTGTGTTGTTTGCC
TTCGAAGAGGCGATCGGCTTCATGGTCGGCACCACCGTACTTGACAAGGA
TGGTGTCAGCGCGGCTGGCCATTTGGCCACTATGGCGTGCTATCTTCGGT
GCAAGCTGTGCATGACACTGCAGGAGAAACTGCGCGACATCTACGAAACA
TATGGGTTCCACACGACTGTCAGCTCCTATGTCATATGCCGTTGCCCGCC
GGTCATCGAGCAGATCTTTGAGCGCTTGCGCACCTGGGACGAGGGCAAGG
CAGACACGTATCCGACCAGCATCCTTAACGGCGAGTACGAGATTGAAAAC
GTTCGCGATTTAACCACGGGATTCGACAGTAGCACTGGCGACAAGAAGGC
CACCTTGCCGACCAGCTCCAGTTCCCAAATGATCACATTTACCTTCAAAA
ACGGACTCGTGGTCACTCTACGCACCAGCGGCACGGAGCCCAAGATGAAG
TACTACGCCGAAATGTGTGGCAAGCCGGACGAGAAAAACTGGGCCAAGCT
GACTAATACAATGAATACCATGGTGGAGGCCATTGTCGAGGAATTCTACG
AGCCAAGCAAGAACGGCCTCCAGCGCAGGAAGGAATAAAAGCTTTCTAGA
CCAT
BS12664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 1872 | CG8073-PA | 1..1872 | 17..1888 | 9330 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 2443 | CG8073-RA | 324..2196 | 16..1888 | 9335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9107398..9109006 | 1888..280 | 8015 | 99.9 | Minus |
| 2R | 25286936 | 2R | 9109233..9109395 | 178..16 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 9109070..9109172 | 280..178 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:55:58 has no hits.
BS12664.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:17 Download gff for
BS12664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 330..2199 | 17..1886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:36 Download gff for
BS12664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 325..2194 | 17..1886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:06 Download gff for
BS12664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 330..2199 | 17..1886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:06 Download gff for
BS12664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 325..2194 | 17..1886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:06 Download gff for
BS12664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9107400..9109006 | 280..1886 | 99 | <- | Minus |
| 2R | 9109071..9109172 | 178..279 | 100 | <- | Minus |
| 2R | 9109234..9109394 | 17..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:36 Download gff for
BS12664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4994905..4996511 | 280..1886 | 99 | <- | Minus |
| arm_2R | 4996576..4996677 | 178..279 | 100 | <- | Minus |
| arm_2R | 4996739..4996899 | 17..177 | 100 | | Minus |
BS12664.3prime Sequence
902 bp (800 high quality bases) assembled on 2006-10-13
> BS12664.3prime
ATGGTCTAGAAAGCTTTTATTCCTTCCTGCGCTGGAGGCCGTTCTTGCTT
GGCTCGTAGAATTCCTCGACAATGGCCTCCACCATGGTATTCATTGTATT
AGTCAGCTTGGCCCAGTTTTTCTCGTCCGGCTTGCCACACATTTCGGCGT
AGTACTTCATCTTGGGCTCCGTGCCGCTGGTGCGTAGAGTGACCACGAGT
CCGTTTTTGAAGGTAAATGTGATCATTTGGGAACTGGAGCTGGTCGGCAA
GGTGGCCTTCTTGTCGCCAGTGCTACTGTCGAATCCCGTGGTTAAATCGC
GAACGTTTTCAATCTCGTACTCGCCGTTAAGGATGCTGGTCGGATACGTG
TCTGCCTTGCCCTCGTCCCAGGTGCGCAAGCGCTCAAAGATCTGCTCGAT
GACCGGCGGGCAACGGCATATGACATAGGAGCTGACAGTCGTGTGGAACC
CATATGTTTCGTAGATGTCGCGCAGTTTCTCCTGCAGTGTCATGCACAGC
TTGCACCGAAGATAGCACGCCATAGTGGCCAAATGGCCAGCCGCGCTGAC
ACCATCCTTGTCAAGTACGGTGGTGCCGACCATGAAGCCGATCGCCTCTT
CGAAGGCAAACAACACAGTTTTTCCCGCCTGCTGTAGCTCGATTGCCTTG
TTACCCATCCACTTGAATCCAGTCAGCGTTTCGAAGAACTGGAAGCCTTC
CCGCTCGGCCATGGCCCTGAGAATCTTTGAGCTCACCGTACTGGCTATCA
TCACACAGTTACTAACATCGCAGTCGGGTTCTCGCATTTTGTGCAGCTCC
AGAGACCACCAGCCCAAAAGAGCGCCCACTTCGTTGCCGCTGAACAGCTT
ATAGCTACCATCCTCGCGTACTTCGGCAACTGCCAGGCGGTCGGCATCCG
GA
BS12664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8073-PA | 1872 | Pmm45A-RA | 987..1872 | 902..17 | 4405 | 99.8 | Minus |
| CG8073-PB | 1755 | Pmm45A-RB | 987..1696 | 902..193 | 3525 | 99.8 | Minus |
| CG8073-PB | 1755 | Pmm45A-RB | 1695..1755 | 77..17 | 305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 2443 | CG8073-RA | 1311..2196 | 902..17 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9107398..9108283 | 17..902 | 4415 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:17:07 has no hits.
BS12664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:09 Download gff for
BS12664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8073-PA | 988..1872 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:44:43 Download gff for
BS12664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 1312..2196 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:36 Download gff for
BS12664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 1312..2196 | 17..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:36 Download gff for
BS12664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9107398..9108282 | 17..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:44:43 Download gff for
BS12664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4994903..4995787 | 17..901 | 99 | | Plus |
BS12664.5prime Sequence
881 bp (766 high quality bases) assembled on 2006-10-13
> BS12664.5prime
GAAGTTATCAGTCGACATGTGTCAATCCGGCGGCCAGATGCTGTGCGAGA
TCAAGAACATGGCTCTTTCGGGCGATCCGGAGCTAGATGGCGAGATCCGC
AAGTGGATTCGATGGGACAAATGCGCTAGCACCGCCTGCCAAATCATGGA
CGCAGTTCGGGCGAAAGACTGGGACACGCTGCGCAAGAGACTGTGCACCC
GCATCAGCTTCGGCACGGCCGGATTGAGGGCTTGCATGCGGGCTGGCTTT
GACTCCATGAACGAGCTGGTGGTGATTCAGACGGCGCAGGGCTTATGTGA
GTACATCAAGGAACAGTACCCTGATCCGGCGGACTGGTCCGGACGTGGCA
TTGTCTTCGGGTATGACGGTCGTTACAATAGCCACCGCTTCGCCGAGCTC
TCGGCCATTGTGTTCCTAAACAACGACTTTAAGGTGTGGTTGTTCAAGCG
CTACGTGGCCACGCCCATGGTGCCCTTTGCCATCTTGAGGCTACAGTGCT
TGGCCGGCGTCATGGTGACCGCCTCGCACAATCCCAAGGAGGACAATGGC
TACAAGGTGTACTGGACCAATGGAGCCCAAATCATTCCGCCGCACGACGA
GGGCATACAGGAGTCGATTCTAAACAATTTGGAGCCCAAGGGCTCATCCT
GGGACGATTCGGCGATGTGCTCGAACACAATGCTGGAGGATCCGTACGAT
ATCGTTGTGCCGCCCTATTTCGATATACTGAAGAAACAACTGCCTTGCAC
TTCGCTGGAGGCCAACGGAAGGTGCTCTCTCTCATTCACCTATACGGCCA
TGCACGGCGTGAGCTATGCATTTGTGAAGCAGGCTTTCGCCCGAATCAAT
CTTAAGCCTTTCATATCGGTGTGCGAGCAGC
BS12664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8073-PB | 1755 | Pmm45A-RB | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG8073-PA | 1872 | Pmm45A-RA | 1..865 | 17..881 | 4275 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 2443 | CG8073-RA | 324..1189 | 16..881 | 4300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9108405..9109006 | 881..280 | 2980 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9109233..9109395 | 178..16 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 9109070..9109172 | 280..178 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:42:29 has no hits.
BS12664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:09 Download gff for
BS12664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8073-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:32:14 Download gff for
BS12664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 316..1189 | 8..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:38 Download gff for
BS12664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 316..1189 | 8..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:38 Download gff for
BS12664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9108405..9109006 | 280..881 | 99 | <- | Minus |
| 2R | 9109071..9109172 | 178..279 | 100 | <- | Minus |
| 2R | 9109234..9109403 | 8..177 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:32:14 Download gff for
BS12664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4995910..4996511 | 280..881 | 99 | <- | Minus |
| arm_2R | 4996576..4996677 | 178..279 | 100 | <- | Minus |
| arm_2R | 4996739..4996908 | 8..177 | 98 | | Minus |
BS12664.pep Sequence
Translation from 16 to 1887
> BS12664.pep
MCQSGGQMLCEIKNMALSGDPELDGEIRKWIRWDKCASTACQIMDAVRAK
DWDTLRKRLCTRISFGTAGLRACMRAGFDSMNELVVIQTAQGLCEYIKEQ
YPDPADWSGRGIVFGYDGRYNSHRFAELSAIVFLNNDFKVWLFKRYVATP
MVPFAILRLQCLAGVMVTASHNPKEDNGYKVYWTNGAQIIPPHDEGIQES
ILNNLEPKGSSWDDSAMCSNTMLEDPYDIVVPPYFDILKKQLPCTSLEAN
GRCSLSFTYTAMHGVGYAFVKQAFARINLKPFISVCEQQEPDPEFPTTPM
PNPEEGKTSLDLSIKTAKANSSQIILANDPDADRLAVAEVREDGSYKLFS
GNEVGALLGWWSLELHKMREPDCDVSNCVMIASTVSSKILRAMAEREGFQ
FFETLTGFKWMGNKAIELQQAGKTVLFAFEEAIGFMVGTTVLDKDGVSAA
GHLATMACYLRCKLCMTLQEKLRDIYETYGFHTTVSSYVICRCPPVIEQI
FERLRTWDEGKADTYPTSILNGEYEIENVRDLTTGFDSSTGDKKATLPTS
SSSQMITFTFKNGLVVTLRTSGTEPKMKYYAEMCGKPDEKNWAKLTNTMN
TMVEAIVEEFYEPSKNGLQRRKE*
BS12664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-PA | 623 | CG8073-PA | 1..623 | 1..623 | 3316 | 100 | Plus |
| CG10202-PA | 628 | CG10202-PA | 17..621 | 12..618 | 1723 | 52.7 | Plus |
