Clone Sequence Records
BS12666.3prime Sequence
799 bp (674 high quality bases) assembled on 2006-10-13
> BS12666.3prime
ATGGTCTAGAAAGCTTTTAGCGGTGGCGACGGATGTGGCTGGAGGCCACA
GACTGACCCTGCTGCCGCAGCCGGCACAACTCGTCGGTACTGTAGTTCAG
CTTGCGGGTTGCGTTTTCTGAGAAACGCTCGAACTTGGCCACTAGGTCCA
CCAGTTGCGTCTTGATCGCCTGCACCTCGGCGAGCACTGCGCTTAGGACA
TTAGCCTGATTCTTCATCTGTACTGTTCCCTCCGCCTCCTGGCGGAACTG
CTGCGGCACATTTGTAGCGGATCGGGGGCGCAAAAGCTCGTGCATGTGAA
ATAAATTCTGTGGAGTCTTCTTTGTGGTCCCCGTGGCAGGTTCTGGCTTG
AGGAAATCCGTGTGGAGCGGCTGCTGCTGACGCTGTAGACTGCGGCTGAA
AATGTTGTAGTTGTTTTCGAACTGGCGCCGTCGGAGGCTCTGGTTTCTGT
CGCGCCGTTCAGCCACTAGCTTATAGACATTTAACTTAATATCCTCAGGC
AACTGATTGTCCCGGGGGTCGTTGGGCCGTATAGTGAACTGAAGTTTGTC
CCGGGACGTGCGCAAAAGAGCACTCCTCTTACACAGCTGAATGAGGTTAG
TGGGCGCACTTCGCAGTAGGCGGGAGAAAAATAGGCTTTCCAAGCGTGAC
ACCAGCTCCGCTTGGCGCACGAGACGATCGAGCGTGGCGCTCACTTGCAA
TCCTTGTATGTCGCTTACGGCCAATCCCACCATGAGATTGGTTAAATTAC
CGTAACAAGAAGCACGAAGGAGAGAAATATGATGTGAGCGGTGACAGGG
BS12666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17142-PA | 2871 | pyx-RA | 2088..2871 | 799..17 | 3880 | 99.8 | Minus |
| CG17142-PB | 1617 | pyx-RB | 834..1617 | 799..17 | 3880 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 2502 | CG17142-RB | 1082..1865 | 799..17 | 3895 | 99.9 | Minus |
| pyx-RA | 3966 | CG17142-RA | 2546..3329 | 799..17 | 3895 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 218669..219452 | 17..799 | 3870 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:04:42 has no hits.
BS12666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:10 Download gff for
BS12666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17142-PB | 834..1617 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:07:27 Download gff for
BS12666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 2546..3329 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:07 Download gff for
BS12666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 2546..3329 | 17..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:07 Download gff for
BS12666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 218669..219452 | 17..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:07:27 Download gff for
BS12666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 218669..219452 | 17..799 | 99 | | Plus |
BS12666.5prime Sequence
871 bp (777 high quality bases) assembled on 2006-10-13
> BS12666.5prime
GAAGTTATCAGTCGACATGCAAAAGCTGGACTCTTCGATAAAGGCGAACG
ACCAGGAAATCGGCGACGTTGACTGTCAGATAAAGCTAGACTTCCGGCTT
TTGGTACCCAGTTCCTCGATGGATCGGGGAGAAACCGAGCTACTACTTTC
CCTTATAGAAGTGGGACAGAAGCGCATTCTCATGCACCCGCTTTGCGAAA
CTTTCCTCTTTCTTAAGTGGCGTCGCATTCGGAAATTCTTCCTTATGAGC
CTTGCGTATCATACGCTTTTCGTGATCCTTTTCACTTTCTATGTAATTTG
GGTGTATGTCCGCTGCTGCAAGAAGGAGGAGTTGTGCGTGGCTCCAGGTT
ACGTTTCAACTATTGGATATCTGGTGATCATACTAAACCTCATTCTGCTG
GGGAAAGAGGTCTTTCAAATGGCACACGGACTTCGTGGCTACGCAAAATA
TTGGGAGAACTGGCTGCAATGGACCATTGGAACCGGTGTGCTCCTATGTG
TAACACCGGAGACCGTGCGAACTGACGATTTAACGGCAGTGCCGGTGTGG
CAACATCACGTGGCAGCTATAGTGATATTGCTCGTCTGGCTGGAACTAAT
GATGTTGGTGGGACGATTCCCCATATTTGGCGTATATGTTCAAATGTTCA
CAAAGGTGGCCGTTAACTTTGCGAAATTCTTGCTTGCCTACATATGCCTG
CTGGTGGCTTTTGGCCTCAGCTTTGCCGTGCTCTTCAATGATTATCCTGC
CTTTGAGAACATCACATGGTCCTTTTTGAAATCCATCACGATGATGTCTG
GGGAACTGGAGTTTGAAGACATATTCTATGGGGACTATGCCGTCAAATTC
CCTGTCACCGCTCACATCATA
BS12666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17142-PA | 2871 | pyx-RA | 1255..2109 | 17..871 | 4250 | 99.8 | Plus |
| CG17142-PB | 1617 | pyx-RB | 1..855 | 17..871 | 4250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 2502 | CG17142-RB | 249..1103 | 17..871 | 4260 | 99.9 | Plus |
| pyx-RA | 3966 | CG17142-RA | 1713..2567 | 17..871 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 219713..220352 | 656..17 | 3200 | 100 | Minus |
| 3L | 28110227 | 3L | 219431..219646 | 871..656 | 1065 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:17:49 has no hits.
BS12666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:11 Download gff for
BS12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17142-PB | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:44:58 Download gff for
BS12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..2566 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:32:42 Download gff for
BS12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..2566 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:32:42 Download gff for
BS12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 219432..219645 | 657..870 | 99 | <- | Minus |
| 3L | 219713..220352 | 17..656 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:44:58 Download gff for
BS12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 219432..219645 | 657..870 | 99 | <- | Minus |
| arm_3L | 219713..220352 | 17..656 | 100 | | Minus |
BS12666.complete Sequence
1649 bp assembled on 2008-08-14
GenBank Submission: FJ637259
> BS12666.complete
GAAGTTATCAGTCGACATGCAAAAGCTGGACTCTTCGATAAAGGCGAACG
ACCAGGAAATCGGCGACGTTGACTGTCAGATAAAGCTAGACTTCCGGCTT
TTGGTACCCAGTTCCTCGATGGATCGGGGAGAAACCGAGCTACTACTTTC
CCTTATAGAAGTGGGACAGAAGCGCATTCTCATGCACCCGCTTTGCGAAA
CTTTCCTCTTTCTTAAGTGGCGTCGCATTCGGAAATTCTTCCTTATGAGC
CTTGCGTATCATACGCTTTTCGTGATCCTTTTCACTTTCTATGTAATTTG
GGTGTATGTCCGCTGCTGCAAGAAGGAGGAGTTGTGCGTGGCTCCAGGTT
ACGTTTCAACTATTGGATATCTGGTGATCATACTAAACCTCATTCTGCTG
GGGAAAGAGGTCTTTCAAATGGCACACGGACTTCGTGGCTACGCAAAATA
TTGGGAGAACTGGCTGCAATGGACCATTGGAACCGGTGTGCTCCTATGTG
TAACACCGGAGACCGTGCGAACTGACGATTTAACGGCAGTGCCGGTGTGG
CAACATCACGTGGCAGCTATAGTGATATTGCTCGTCTGGCTGGAACTAAT
GATGTTGGTGGGACGATTCCCCATATTTGGCGTATATGTTCAAATGTTCA
CAAAGGTGGCCGTTAACTTTGCGAAATTCTTGCTTGCCTACATATGCCTG
CTGGTGGCTTTTGGCCTCAGCTTTGCCGTGCTCTTCAATGATTATCCTGC
CTTTGAGAACATCACATGGTCCTTTTTGAAGTCCATCACGATGATGTCTG
GGGAACTGGAGTTTGAAGACATATTCTATGGGGACTATGCCGTCAAATTC
CCTGTCACCGCTCACATCATATTTCTCTCCTTCGTGCTTCTTGTTACGGT
AATTTTAACCAATCTCATGGTGGGATTGGCCGTAAGCGACATACAAGGAT
TGCAAGTGAGCGCCACGCTCGATCGTCTCGTGCGCCAAGCGGAGCTGGTG
TCACGCTTGGAAAGCCTATTTTTCTCCCGCCTACTGCGAAGTGCGCCCAC
TAACCTCATTCAGCTGTGTAAGAGGAGTGCTCTTTTGCGCACGTCCCGGG
ACAAACTTCAGTTCACTATACGGCCCAACGACCCCCGGGACAATCAGTTG
CCTGAGGATATTAAGTTAAATGTCTATAAGCTAGTGGCTGAACGGCGCGA
CAGAAACCAGAGCCTCCGACGGCGCCAGTTCGAAAACAACTACAACATTT
TCAGCCGCAGTCTACAGCGTCAGCAGCAGCCGCTCCACACGGATTTCCTC
AAGCCAGAACCTGCCACGGGGACCACAAAGAAGACTCCACAGAATTTATT
TCACATGCACGAGCTTTTGCGCCCCCGATCCGCTACAAATGTGCCGCAGC
AGTTCCGCCAGGAGGCGGAGGGAACAGTACAGATGAAGAATCAGGCTAAT
GTCCTAAGCGCAGTGCTCGCCGAGGTGCAGGCGATCAAGACGCAACTGGT
GGACCTAGTGGCCAAGTTCGAGCGTTTCTCAGAAAACGCAACCCGCAAGC
TGAACTACAGTACCGACGAGTTGTGCCGGCTGCGGCAGCAGGGTCAGTCT
GTGGCCTCCAGCCACATCCGTCGCCACCGCTAAAAGCTTTCTAGACCAT
BS12666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 1617 | CG17142-PB | 1..1617 | 17..1633 | 8085 | 100 | Plus |
| pyx-RA | 2871 | CG17142-PA | 1255..2871 | 17..1633 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 2502 | CG17142-RB | 249..1865 | 17..1633 | 8085 | 100 | Plus |
| pyx-RA | 3966 | CG17142-RA | 1713..3329 | 17..1633 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 218669..219646 | 1633..656 | 4890 | 100 | Minus |
| 3L | 28110227 | 3L | 219713..220352 | 656..17 | 3200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:06:45 has no hits.
BS12666.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:29 Download gff for
BS12666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RB | 249..1865 | 17..1633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:49 Download gff for
BS12666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..3327 | 17..1631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:42 Download gff for
BS12666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RB | 249..1863 | 17..1631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:01 Download gff for
BS12666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..3327 | 17..1631 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:01 Download gff for
BS12666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 218671..219645 | 657..1631 | 100 | <- | Minus |
| 3L | 219713..220352 | 17..656 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:49 Download gff for
BS12666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 218671..219645 | 657..1631 | 100 | <- | Minus |
| arm_3L | 219713..220352 | 17..656 | 100 | | Minus |
BS12666.pep Sequence
Translation from 16 to 1632
> BS12666.pep
MQKLDSSIKANDQEIGDVDCQIKLDFRLLVPSSSMDRGETELLLSLIEVG
QKRILMHPLCETFLFLKWRRIRKFFLMSLAYHTLFVILFTFYVIWVYVRC
CKKEELCVAPGYVSTIGYLVIILNLILLGKEVFQMAHGLRGYAKYWENWL
QWTIGTGVLLCVTPETVRTDDLTAVPVWQHHVAAIVILLVWLELMMLVGR
FPIFGVYVQMFTKVAVNFAKFLLAYICLLVAFGLSFAVLFNDYPAFENIT
WSFLKSITMMSGELEFEDIFYGDYAVKFPVTAHIIFLSFVLLVTVILTNL
MVGLAVSDIQGLQVSATLDRLVRQAELVSRLESLFFSRLLRSAPTNLIQL
CKRSALLRTSRDKLQFTIRPNDPRDNQLPEDIKLNVYKLVAERRDRNQSL
RRRQFENNYNIFSRSLQRQQQPLHTDFLKPEPATGTTKKTPQNLFHMHEL
LRPRSATNVPQQFRQEAEGTVQMKNQANVLSAVLAEVQAIKTQLVDLVAK
FERFSENATRKLNYSTDELCRLRQQGQSVASSHIRRHR*
BS12666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-PB | 538 | CG17142-PB | 1..538 | 1..538 | 2754 | 100 | Plus |
| pyx-PA | 956 | CG17142-PA | 419..956 | 1..538 | 2754 | 100 | Plus |
| wtrw-PD | 969 | CG31284-PD | 459..884 | 2..409 | 558 | 32 | Plus |
| wtrw-PC | 986 | CG31284-PC | 476..901 | 2..409 | 558 | 32 | Plus |
| wtrw-PB | 986 | CG31284-PB | 476..901 | 2..409 | 558 | 32 | Plus |
