Clone Sequence Records
BS12669.complete Sequence
245 bp assembled on 2006-11-01
GenBank Submission: FJ637260
> BS12669.complete
GAAGTTATCAGTCGACATGGCGGATCCGAGTATCAATGACATCGATGAGA
CTGTGGCTCCTCCCCTCGGAGGCGCTGACAGCTTCGACCTGAACAAGCGG
CTAGATTGCGAGCATTTAGATCAGATGACGGATAATTGGACCGATTATCA
AAGACCCTCGTTTGCCACCGAACTTCTGCGATTTTTCGGCAACGTATTTG
TCGATATATTTAATGCGATTTTCAACTGAAAGCTTTCTAGACCAT
BS12669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30192-RA | 213 | CG30192-PA | 1..213 | 17..229 | 1065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30192-RA | 373 | CG30192-RA | 86..299 | 16..229 | 1070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23138674..23138777 | 16..119 | 520 | 100 | Plus |
2R | 25286936 | 2R | 23138842..23138924 | 118..200 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3970..4004 | 151..185 | 112 | 80 | Plus |
BS12669.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:37 Download gff for
BS12669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 1..213 | 17..229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:05:43 Download gff for
BS12669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 91..311 | 8..234 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:01 Download gff for
BS12669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 87..298 | 17..228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:55:37 Download gff for
BS12669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 91..311 | 8..234 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:35 Download gff for
BS12669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 87..298 | 17..228 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:35 Download gff for
BS12669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23138675..23138777 | 17..119 | 100 | -> | Plus |
2R | 23138844..23138924 | 120..200 | 100 | -> | Plus |
2R | 23138983..23139010 | 201..228 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:01 Download gff for
BS12669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19026198..19026300 | 17..119 | 100 | -> | Plus |
arm_2R | 19026367..19026447 | 120..200 | 100 | -> | Plus |
arm_2R | 19026506..19026533 | 201..228 | 100 | | Plus |
BS12669.3prime Sequence
243 bp (243 high quality bases) assembled on 2006-10-13
> BS12669.3prime
ATGGTCTAGAAAGCTTTCAGTTGAAAATCGCATTAAATATATCGACAAAT
ACGTTGCCGAAAAATCGCAGAAGTTCGGTGGCAAACGAGGGTCTTTGATA
ATCGGTCCAATTATCCGTCATCTGATCTAAATGCTCGCAATCTAGCCGCT
TGTTCAGGTCGAAGCTGTCAGCGCCTCCGAGGGGAGGAGCCACAGTCTCA
TCGATGTCATTGATACTCGGATCCGCCATGTCGACTGATAACT
BS12669.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30192-PA | 213 | CG30192-RA | 1..213 | 229..17 | 1065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30192-RA | 373 | CG30192-RA | 86..299 | 230..17 | 1070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23138674..23138777 | 230..127 | 520 | 100 | Minus |
2R | 25286936 | 2R | 23138842..23138924 | 128..46 | 415 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3970..4004 | 95..61 | 112 | 80 | Minus |
BS12669.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:13 Download gff for
BS12669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-PA | 1..213 | 17..229 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:12 Download gff for
BS12669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 82..302 | 12..238 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:22 Download gff for
BS12669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 82..302 | 12..238 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:22 Download gff for
BS12669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23138670..23138777 | 127..238 | 96 | -> | Minus |
2R | 23138844..23138924 | 46..126 | 100 | -> | Minus |
2R | 23138983..23139014 | 12..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:12 Download gff for
BS12669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19026193..19026300 | 127..238 | 96 | -> | Minus |
arm_2R | 19026367..19026447 | 46..126 | 100 | -> | Minus |
arm_2R | 19026506..19026537 | 12..45 | 91 | | Minus |
BS12669.5prime Sequence
243 bp (243 high quality bases) assembled on 2006-10-13
> BS12669.5prime
GAAGTTATCAGTCGACATGGCGGATCCGAGTATCAATGACATCGATGAGA
CTGTGGCTCCTCCCCTCGGAGGCGCTGACAGCTTCGACCTGAACAAGCGG
CTAGATTGCGAGCATTTAGATCAGATGACGGATAATTGGACCGATTATCA
AAGACCCTCGTTTGCCACCGAACTTCTGCGATTTTTCGGCAACGTATTTG
TCGATATATTTAATGCGATTTTCAACTGAAAGCTTTCTAGACC
BS12669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30192-PA | 213 | CG30192-RA | 1..213 | 17..229 | 1065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30192-RA | 373 | CG30192-RA | 86..299 | 16..229 | 1070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23138674..23138777 | 16..119 | 520 | 100 | Plus |
2R | 25286936 | 2R | 23138842..23138924 | 118..200 | 415 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 17:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3970..4004 | 151..185 | 112 | 80 | Plus |
BS12669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:13 Download gff for
BS12669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-PA | 1..213 | 17..229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:29 Download gff for
BS12669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 82..302 | 8..234 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:03 Download gff for
BS12669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30192-RA | 82..302 | 8..234 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:03 Download gff for
BS12669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23138670..23138777 | 8..119 | 96 | -> | Plus |
2R | 23138844..23138924 | 120..200 | 100 | -> | Plus |
2R | 23138983..23139014 | 201..234 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:29 Download gff for
BS12669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19026193..19026300 | 8..119 | 96 | -> | Plus |
arm_2R | 19026367..19026447 | 120..200 | 100 | -> | Plus |
arm_2R | 19026506..19026537 | 201..234 | 91 | | Plus |
BS12669.pep Sequence
Translation from 16 to 228
> BS12669.pep
MADPSINDIDETVAPPLGGADSFDLNKRLDCEHLDQMTDNWTDYQRPSFA
TELLRFFGNVFVDIFNAIFN*
BS12669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30192-PA | 70 | CG30192-PA | 1..70 | 1..70 | 378 | 100 | Plus |