Clone Sequence Records
BS12670.3prime Sequence
195 bp (195 high quality bases) assembled on 2006-10-13
> BS12670.3prime
ATGGTCTAGAAAGCTTTTACTGCCATAACAGACTGAAAAGGTTCAGAGGC
GGCATGCCAGGCTCAGCTCCCTTCATAAATCCCAAATACAGCACAAGAGG
CACGAATCCCCAGTGGAATCCAGTCTGGACGACTCCAACCACAAATCCCA
AACGATCCTTAACTCCCTCGGATAGCTTCATGTCGACTGATAACT
BS12670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8226-PA | 165 | Tom7-RA | 1..165 | 181..17 | 825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom7-RB | 539 | CG8226-RB | 195..365 | 185..15 | 840 | 99.4 | Minus |
Tom7-RA | 355 | CG8226-RA | 73..243 | 185..15 | 840 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8951789..8951893 | 185..81 | 510 | 99 | Minus |
2R | 25286936 | 2R | 8952001..8952068 | 82..15 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:33:53 has no hits.
BS12670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:14 Download gff for
BS12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8226-PA | 1..165 | 17..181 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:05 Download gff for
BS12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 63..243 | 15..195 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:35 Download gff for
BS12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 63..243 | 15..195 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:35 Download gff for
BS12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8951779..8951892 | 82..195 | 95 | -> | Minus |
2R | 8952002..8952068 | 15..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:05 Download gff for
BS12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4839284..4839397 | 82..195 | 95 | -> | Minus |
arm_2R | 4839507..4839573 | 15..81 | 100 | | Minus |
BS12670.5prime Sequence
195 bp (195 high quality bases) assembled on 2006-10-13
> BS12670.5prime
GAAGTTATCAGTCGACATGAAGCTATCCGAGGGAGTTAAGGATCGTTTGG
GATTTGTGGTTGGAGTCGTCCAGACTGGATTCCACTGGGGATTCGTGCCT
CTTGTGCTGTATTTGGGATTTATGAAGGGAGCTGAGCCTGGCATGCCGCC
TCTGAACCTTTTCAGTCTGTTATGGCAGTAAAAGCTTTCTAGACC
BS12670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8226-PA | 165 | Tom7-RA | 1..165 | 17..181 | 825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom7-RB | 539 | CG8226-RB | 195..365 | 13..183 | 840 | 99.4 | Plus |
Tom7-RA | 355 | CG8226-RA | 73..243 | 13..183 | 840 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8951789..8951893 | 13..117 | 510 | 99 | Plus |
2R | 25286936 | 2R | 8952001..8952068 | 116..183 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:27:04 has no hits.
BS12670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:15 Download gff for
BS12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8226-PA | 1..165 | 17..181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:06:03 Download gff for
BS12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 63..243 | 2..183 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:32 Download gff for
BS12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 63..243 | 2..183 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:32 Download gff for
BS12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8951779..8951892 | 2..116 | 95 | -> | Plus |
2R | 8952002..8952068 | 117..183 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:06:03 Download gff for
BS12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4839284..4839397 | 2..116 | 95 | -> | Plus |
arm_2R | 4839507..4839573 | 117..183 | 100 | | Plus |
BS12670.complete Sequence
197 bp assembled on 2007-12-19
GenBank Submission: FJ637261
> BS12670.complete
GAAGTTATCAGTCGACATGAAGCTATCCGAGGGAGTTAAGGATCGTTTGG
GATTTGTGGTTGGAGTCGTCCAGACTGGATTCCACTGGGGATTCGTGCCT
CTTGTGCTGTATTTGGGATTTATGAAGGGAGCTGAGCCTGGCATGCCGCC
TCTGAACCTTTTCAGTCTGTTATGGCAGTAAAAGCTTTCTAGACCAT
BS12670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom7-RB | 165 | CG8226-PB | 1..165 | 17..181 | 825 | 100 | Plus |
Tom7-RA | 165 | CG8226-PA | 1..165 | 17..181 | 825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom7-RB | 539 | CG8226-RB | 195..365 | 13..183 | 840 | 99.4 | Plus |
Tom7-RA | 355 | CG8226-RA | 73..243 | 13..183 | 840 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8951789..8951893 | 13..117 | 510 | 99 | Plus |
2R | 25286936 | 2R | 8952001..8952068 | 116..183 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:27:10 has no hits.
BS12670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:20 Download gff for
BS12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 1..165 | 17..181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:58 Download gff for
BS12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 106..268 | 17..179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:31 Download gff for
BS12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 77..239 | 17..179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:15:20 Download gff for
BS12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 92..272 | 2..183 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:55 Download gff for
BS12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom7-RA | 77..239 | 17..179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:55 Download gff for
BS12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8952002..8952064 | 117..179 | 100 | | Plus |
2R | 8951793..8951892 | 17..116 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:31 Download gff for
BS12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4839507..4839569 | 117..179 | 100 | | Plus |
arm_2R | 4839298..4839397 | 17..116 | 100 | -> | Plus |
BS12670.pep Sequence
Translation from 16 to 180
> BS12670.pep
MKLSEGVKDRLGFVVGVVQTGFHWGFVPLVLYLGFMKGAEPGMPPLNLFS
LLWQ*
BS12670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom7-PB | 54 | CG8226-PB | 1..54 | 1..54 | 291 | 100 | Plus |
Tom7-PA | 54 | CG8226-PA | 1..54 | 1..54 | 291 | 100 | Plus |