Clone Sequence Records
BS12671.5prime Sequence
189 bp (189 high quality bases) assembled on 2006-10-13
> BS12671.5prime
GAAGTTATCAGTCGACATGTGCAGCTATCCTTGCTATCCTTGCGCCGCCT
TGTGTCCCTGCGGAGGCAGTGGACCAAGTGGATTCTACGATCCGTGCTTT
GGACCCTACAACGGACCATTTAACTCCTGGTGCGGAGCAAGTGGACCCGG
TTTCTGGAGAGGTGGATGTTGCTAGAAGCTTTCTAGACC
BS12671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31226-PA | 159 | CG31226-RA | 1..159 | 17..175 | 795 | 100 | Plus |
| CG31226-PB | 159 | CG31226-RB | 1..159 | 17..175 | 795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31226-RB | 384 | CG31226-RB | 91..250 | 16..175 | 800 | 100 | Plus |
| CG31226-RA | 389 | CG31226-RA | 96..255 | 16..175 | 800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18851492..18851651 | 175..16 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:18:26 has no hits.
BS12671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:16 Download gff for
BS12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-PB | 1..159 | 17..175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:50:08 Download gff for
BS12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 86..258 | 7..182 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:37:18 Download gff for
BS12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 86..258 | 7..182 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:37:18 Download gff for
BS12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18851487..18851661 | 7..182 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:50:08 Download gff for
BS12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14677209..14677383 | 7..182 | 95 | | Minus |
BS12671.3prime Sequence
189 bp (189 high quality bases) assembled on 2006-10-13
> BS12671.3prime
ATGGTCTAGAAAGCTTCTAGCAACATCCACCTCTCCAGAAACCGGGTCCA
CTTGCTCCGCACCAGGAGTTAAATGGTCCGTTGTAGGGTCCAAAGCACGG
ATCGTAGAATCCACTTGGTCCACTGCCTCCGCAGGGACACAAGGCGGCGC
AAGGATAGCAAGGATAGCTGCACATGTCGACTGATAACT
BS12671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31226-PA | 159 | CG31226-RA | 1..159 | 175..17 | 795 | 100 | Minus |
| CG31226-PB | 159 | CG31226-RB | 1..159 | 175..17 | 795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31226-RB | 384 | CG31226-RB | 91..250 | 176..17 | 800 | 100 | Minus |
| CG31226-RA | 389 | CG31226-RA | 96..255 | 176..17 | 800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18851492..18851651 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:13:14 has no hits.
BS12671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:15 Download gff for
BS12671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-PB | 1..159 | 17..175 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:29 Download gff for
BS12671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 86..258 | 10..185 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:26 Download gff for
BS12671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 86..258 | 10..185 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:26 Download gff for
BS12671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18851487..18851661 | 10..185 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:29 Download gff for
BS12671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14677209..14677383 | 10..185 | 95 | | Plus |
BS12671.complete Sequence
191 bp assembled on 2007-12-19
GenBank Submission: FJ637262
> BS12671.complete
GAAGTTATCAGTCGACATGTGCAGCTATCCTTGCTATCCTTGCGCCGCCT
TGTGTCCCTGCGGAGGCAGTGGACCAAGTGGATTCTACGATCCGTGCTTT
GGACCCTACAACGGACCATTTAACTCCTGGTGCGGAGCAAGTGGACCCGG
TTTCTGGAGAGGTGGATGTTGCTAGAAGCTTTCTAGACCAT
BS12671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31226-RB | 159 | CG31226-PB | 1..159 | 17..175 | 795 | 100 | Plus |
| CG31226-RA | 159 | CG31226-PA | 1..159 | 17..175 | 795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31226-RB | 384 | CG31226-RB | 91..250 | 16..175 | 800 | 100 | Plus |
| CG31226-RA | 389 | CG31226-RA | 96..255 | 16..175 | 800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18851492..18851651 | 175..16 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:05:34 has no hits.
BS12671.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:21 Download gff for
BS12671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RB | 1..159 | 17..175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:56 Download gff for
BS12671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 103..261 | 17..175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:52:40 Download gff for
BS12671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 97..255 | 17..175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:15:21 Download gff for
BS12671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 92..264 | 7..182 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:44 Download gff for
BS12671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 97..255 | 17..175 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:44 Download gff for
BS12671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18851492..18851650 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:52:40 Download gff for
BS12671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14677214..14677372 | 17..175 | 100 | | Minus |
BS12671.pep Sequence
Translation from 16 to 174
> BS12671.pep
MCSYPCYPCAALCPCGGSGPSGFYDPCFGPYNGPFNSWCGASGPGFWRGG
CC*
BS12671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31226-PB | 52 | CG31226-PB | 1..52 | 1..52 | 341 | 100 | Plus |
| CG31226-PA | 52 | CG31226-PA | 1..52 | 1..52 | 341 | 100 | Plus |
