Clone BS12672 Report

Search the DGRC for BS12672

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG31644-RA
Protein status:BS12672.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12672.5prime Sequence

294 bp (294 high quality bases) assembled on 2006-10-13

> BS12672.5prime
GAAGTTATCAGTCGACATGCCCGAAGAAAAGTTCAAGTTTCCCATGCATG
ACTTACACTTGAAGCAAACGTTTCGCAATGTAAAAATGGCCTGCACTTTG
GCCCTGTTAGCTCCACTTCTTTTCTACACTTTACACAACAATCCGCGCAA
GAGGAAGTACAGGAACTTTTACTCCACTTACGATCCCATGGATGCGTTCG
ACCGCATGATGAGTGGAGGATACCTATCGTCCTGTCCGCCGGGCAGTGGT
CCCAAAAAGGATGACAAGAAGAAGAAATAGAAGCTTTCTAGACC

BS12672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31644-PA 264 CG31644-RA 1..264 17..280 1270 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31644-RA 480 CG31644-RA 59..323 17..281 1295 99.2 Plus
CG31644-RC 489 CG31644-RC 81..332 30..281 1230 99.2 Plus
CG31644-RB 474 CG31644-RB 71..317 35..281 1220 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5818047..5818298 281..30 1230 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 17:36:01 has no hits.

BS12672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:16 Download gff for BS12672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31644-PA 1..264 17..280 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:19 Download gff for BS12672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 53..323 12..281 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:39 Download gff for BS12672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 53..323 12..281 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:39 Download gff for BS12672.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5818047..5818296 32..281 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:19 Download gff for BS12672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5818047..5818296 32..281 99 <- Minus

BS12672.3prime Sequence

294 bp (294 high quality bases) assembled on 2006-10-13

> BS12672.3prime
ATGGTCTAGAAAGCTTCTATTTCTTCTTCTTGTCATCCTTTTTGGGACCA
CTGCCCGGCGGACAGGACGATAGGTATCCTCCACTCATCATGCGGTCGAA
CGCATCCATGGGATCGTAAGTGGAGTAAAAGTTCCTGTACTTCCTCTTGC
GCGGATTGTTGTGTAAAGTGTAGAAAAGAAGTGGAGCTAACAGGGCCAAA
GTGCAGGCCATTTTTACATTGCGAAACGTTTGCTTCAAGTGTAAGTCATG
CATGGGAAACTTGAACTTTTCTTCGGGCATGTCGACTGATAACT

BS12672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31644-PA 264 CG31644-RA 1..264 280..17 1270 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31644-RA 480 CG31644-RA 59..323 280..16 1295 99.2 Minus
CG31644-RC 489 CG31644-RC 81..332 267..16 1230 99.2 Minus
CG31644-RB 474 CG31644-RB 71..317 262..16 1220 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5818047..5818298 16..267 1230 99.2 Plus
Blast to na_te.dros performed on 2015-02-11 09:10:23 has no hits.

BS12672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:16 Download gff for BS12672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31644-PA 1..264 17..280 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:23 Download gff for BS12672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 53..323 16..285 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:17:43 Download gff for BS12672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 53..323 16..285 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:17:43 Download gff for BS12672.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5818047..5818296 16..265 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:23 Download gff for BS12672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5818047..5818296 16..265 99 <- Plus

BS12672.complete Sequence

296 bp assembled on 2006-11-01

GenBank Submission: FJ637263

> BS12672.complete
GAAGTTATCAGTCGACATGCCCGAAGAAAAGTTCAAGTTTCCCATGCATG
ACTTACACTTGAAGCAAACGTTTCGCAATGTAAAAATGGCCTGCACTTTG
GCCCTGTTAGCTCCACTTCTTTTCTACACTTTACACAACAATCCGCGCAA
GAGGAAGTACAGGAACTTTTACTCCACTTACGATCCCATGGATGCGTTCG
ACCGCATGATGAGTGGAGGATACCTATCGTCCTGTCCGCCGGGCAGTGGT
CCCAAAAAGGATGACAAGAAGAAGAAATAGAAGCTTTCTAGACCAT

BS12672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31644-RA 264 CG31644-PA 1..264 17..280 1290 99.2 Plus
CG31644-RC 273 CG31644-PC 23..273 30..280 1225 99.2 Plus
CG31644-RB 258 CG31644-PB 13..258 35..280 1215 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31644-RA 480 CG31644-RA 59..323 17..281 1295 99.2 Plus
CG31644-RC 489 CG31644-RC 81..332 30..281 1230 99.2 Plus
CG31644-RB 474 CG31644-RB 71..317 35..281 1220 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5818047..5818298 281..30 1230 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:07:21 has no hits.

BS12672.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:13 Download gff for BS12672.complete
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 1..264 17..280 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:07 Download gff for BS12672.complete
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 1..273 10..281 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:12 Download gff for BS12672.complete
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 59..316 17..274 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:13 Download gff for BS12672.complete
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 1..273 10..281 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:39 Download gff for BS12672.complete
Subject Subject Range Query Range Percent Splice Strand
CG31644-RA 59..316 17..274 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:39 Download gff for BS12672.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5818054..5818296 32..274 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:12 Download gff for BS12672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5818054..5818296 32..274 99 <- Minus

BS12672.pep Sequence

Translation from 16 to 279

> BS12672.pep
MPEEKFKFPMHDLHLKQTFRNVKMACTLALLAPLLFYTLHNNPRKRKYRN
FYSTYDPMDAFDRMMSGGYLSSCPPGSGPKKDDKKKK*

BS12672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31644-PA 87 CG31644-PA 1..87 1..87 479 100 Plus
CG31644-PC 90 CG31644-PC 1..90 1..87 465 96.7 Plus
CG31644-PB 85 CG31644-PB 1..85 1..87 455 97.7 Plus