Clone Sequence Records
BS12672.5prime Sequence
294 bp (294 high quality bases) assembled on 2006-10-13
> BS12672.5prime
GAAGTTATCAGTCGACATGCCCGAAGAAAAGTTCAAGTTTCCCATGCATG
ACTTACACTTGAAGCAAACGTTTCGCAATGTAAAAATGGCCTGCACTTTG
GCCCTGTTAGCTCCACTTCTTTTCTACACTTTACACAACAATCCGCGCAA
GAGGAAGTACAGGAACTTTTACTCCACTTACGATCCCATGGATGCGTTCG
ACCGCATGATGAGTGGAGGATACCTATCGTCCTGTCCGCCGGGCAGTGGT
CCCAAAAAGGATGACAAGAAGAAGAAATAGAAGCTTTCTAGACC
BS12672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-PA | 264 | CG31644-RA | 1..264 | 17..280 | 1270 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-RA | 480 | CG31644-RA | 59..323 | 17..281 | 1295 | 99.2 | Plus |
CG31644-RC | 489 | CG31644-RC | 81..332 | 30..281 | 1230 | 99.2 | Plus |
CG31644-RB | 474 | CG31644-RB | 71..317 | 35..281 | 1220 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5818047..5818298 | 281..30 | 1230 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:36:01 has no hits.
BS12672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:16 Download gff for
BS12672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-PA | 1..264 | 17..280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:19 Download gff for
BS12672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 53..323 | 12..281 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:39 Download gff for
BS12672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 53..323 | 12..281 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:39 Download gff for
BS12672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5818047..5818296 | 32..281 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:19 Download gff for
BS12672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5818047..5818296 | 32..281 | 99 | <- | Minus |
BS12672.3prime Sequence
294 bp (294 high quality bases) assembled on 2006-10-13
> BS12672.3prime
ATGGTCTAGAAAGCTTCTATTTCTTCTTCTTGTCATCCTTTTTGGGACCA
CTGCCCGGCGGACAGGACGATAGGTATCCTCCACTCATCATGCGGTCGAA
CGCATCCATGGGATCGTAAGTGGAGTAAAAGTTCCTGTACTTCCTCTTGC
GCGGATTGTTGTGTAAAGTGTAGAAAAGAAGTGGAGCTAACAGGGCCAAA
GTGCAGGCCATTTTTACATTGCGAAACGTTTGCTTCAAGTGTAAGTCATG
CATGGGAAACTTGAACTTTTCTTCGGGCATGTCGACTGATAACT
BS12672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-PA | 264 | CG31644-RA | 1..264 | 280..17 | 1270 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-RA | 480 | CG31644-RA | 59..323 | 280..16 | 1295 | 99.2 | Minus |
CG31644-RC | 489 | CG31644-RC | 81..332 | 267..16 | 1230 | 99.2 | Minus |
CG31644-RB | 474 | CG31644-RB | 71..317 | 262..16 | 1220 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5818047..5818298 | 16..267 | 1230 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:23 has no hits.
BS12672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:16 Download gff for
BS12672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-PA | 1..264 | 17..280 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:23 Download gff for
BS12672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 53..323 | 16..285 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:17:43 Download gff for
BS12672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 53..323 | 16..285 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:17:43 Download gff for
BS12672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5818047..5818296 | 16..265 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:23 Download gff for
BS12672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5818047..5818296 | 16..265 | 99 | <- | Plus |
BS12672.complete Sequence
296 bp assembled on 2006-11-01
GenBank Submission: FJ637263
> BS12672.complete
GAAGTTATCAGTCGACATGCCCGAAGAAAAGTTCAAGTTTCCCATGCATG
ACTTACACTTGAAGCAAACGTTTCGCAATGTAAAAATGGCCTGCACTTTG
GCCCTGTTAGCTCCACTTCTTTTCTACACTTTACACAACAATCCGCGCAA
GAGGAAGTACAGGAACTTTTACTCCACTTACGATCCCATGGATGCGTTCG
ACCGCATGATGAGTGGAGGATACCTATCGTCCTGTCCGCCGGGCAGTGGT
CCCAAAAAGGATGACAAGAAGAAGAAATAGAAGCTTTCTAGACCAT
BS12672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-RA | 264 | CG31644-PA | 1..264 | 17..280 | 1290 | 99.2 | Plus |
CG31644-RC | 273 | CG31644-PC | 23..273 | 30..280 | 1225 | 99.2 | Plus |
CG31644-RB | 258 | CG31644-PB | 13..258 | 35..280 | 1215 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-RA | 480 | CG31644-RA | 59..323 | 17..281 | 1295 | 99.2 | Plus |
CG31644-RC | 489 | CG31644-RC | 81..332 | 30..281 | 1230 | 99.2 | Plus |
CG31644-RB | 474 | CG31644-RB | 71..317 | 35..281 | 1220 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5818047..5818298 | 281..30 | 1230 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:07:21 has no hits.
BS12672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:13 Download gff for
BS12672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 1..264 | 17..280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:07 Download gff for
BS12672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 1..273 | 10..281 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:12 Download gff for
BS12672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 59..316 | 17..274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:13 Download gff for
BS12672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 1..273 | 10..281 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:39 Download gff for
BS12672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 59..316 | 17..274 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:39 Download gff for
BS12672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5818054..5818296 | 32..274 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:12 Download gff for
BS12672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5818054..5818296 | 32..274 | 99 | <- | Minus |
BS12672.pep Sequence
Translation from 16 to 279
> BS12672.pep
MPEEKFKFPMHDLHLKQTFRNVKMACTLALLAPLLFYTLHNNPRKRKYRN
FYSTYDPMDAFDRMMSGGYLSSCPPGSGPKKDDKKKK*
BS12672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-PA | 87 | CG31644-PA | 1..87 | 1..87 | 479 | 100 | Plus |
CG31644-PC | 90 | CG31644-PC | 1..90 | 1..87 | 465 | 96.7 | Plus |
CG31644-PB | 85 | CG31644-PB | 1..85 | 1..87 | 455 | 97.7 | Plus |