Clone Sequence Records
BS12674.5prime Sequence
321 bp (321 high quality bases) assembled on 2006-10-13
> BS12674.5prime
GAAGTTATCAGTCGACATGAGTATTTCTTTAATACGCAAACATCTGAACG
AGATGGGGACCCTTAAGCTCCGATCGTCCATGGGTCGGAACTATATTCCC
ATGGCCGGTCCTCCTCGATTTCCGATGAGTTCAGCGCAGCGTTTGATCTT
TGGTTGCGGTTCCTTGGTTGTCATGATGATCATTCCCTTCTACTGCCTCT
TCAGCCTGCCCCGATGGTCGAGGATGCATTTGGGACTTCCGCCGGAGGAG
GACGAGCAGGCGGAGGAGCCTCCACCACAAGAGGAAAAGGACAAGGAGAA
GAAATAGAAGCTTTCTAGACC
BS12674.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12617-PA | 291 | CG12617-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12617-RC | 1022 | CG12617-RC | 102..395 | 15..308 | 1470 | 100 | Plus |
CG12617-RB | 569 | CG12617-RB | 102..395 | 15..308 | 1470 | 100 | Plus |
CG12617-RA | 538 | CG12617-RA | 102..395 | 15..308 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20294884..20295177 | 15..308 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:03:10 has no hits.
BS12674.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:18 Download gff for
BS12674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-PA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:44 Download gff for
BS12674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 90..387 | 10..308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:39 Download gff for
BS12674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 98..395 | 10..308 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:39 Download gff for
BS12674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20294880..20295177 | 10..308 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:44 Download gff for
BS12674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20294880..20295177 | 10..308 | 99 | | Plus |
BS12674.3prime Sequence
321 bp (321 high quality bases) assembled on 2006-10-13
> BS12674.3prime
ATGGTCTAGAAAGCTTCTATTTCTTCTCCTTGTCCTTTTCCTCTTGTGGT
GGAGGCTCCTCCGCCTGCTCGTCCTCCTCCGGCGGAAGTCCCAAATGCAT
CCTCGACCATCGGGGCAGGCTGAAGAGGCAGTAGAAGGGAATGATCATCA
TGACAACCAAGGAACCGCAACCAAAGATCAAACGCTGCGCTGAACTCATC
GGAAATCGAGGAGGACCGGCCATGGGAATATAGTTCCGACCCATGGACGA
TCGGAGCTTAAGGGTCCCCATCTCGTTCAGATGTTTGCGTATTAAAGAAA
TACTCATGTCGACTGATAACT
BS12674.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12617-PA | 291 | CG12617-RA | 1..291 | 307..17 | 1455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12617-RC | 1022 | CG12617-RC | 102..395 | 309..16 | 1470 | 100 | Minus |
CG12617-RB | 569 | CG12617-RB | 102..395 | 309..16 | 1470 | 100 | Minus |
CG12617-RA | 538 | CG12617-RA | 102..395 | 309..16 | 1470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20294884..20295177 | 309..16 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:01:28 has no hits.
BS12674.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:17 Download gff for
BS12674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-PA | 1..291 | 17..307 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:02 Download gff for
BS12674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 90..387 | 16..314 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:54 Download gff for
BS12674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 98..395 | 16..314 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:54 Download gff for
BS12674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20294880..20295177 | 16..314 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:02 Download gff for
BS12674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20294880..20295177 | 16..314 | 99 | | Minus |
BS12674.complete Sequence
323 bp assembled on 2006-11-01
GenBank Submission: FJ637265
> BS12674.complete
GAAGTTATCAGTCGACATGAGTATTTCTTTAATACGCAAACATCTGAACG
AGATGGGGACCCTTAAGCTCCGATCGTCCATGGGTCGGAACTATATTCCC
ATGGCCGGTCCTCCTCGATTTCCGATGAGTTCAGCGCAGCGTTTGATCTT
TGGTTGCGGTTCCTTGGTTGTCATGATGATCATTCCCTTCTACTGCCTCT
TCAGCCTGCCCCGATGGTCGAGGATGCATTTGGGACTTCCGCCGGAGGAG
GACGAGCAGGCGGAGGAGCCTCCACCACAAGAGGAAAAGGACAAGGAGAA
GAAATAGAAGCTTTCTAGACCAT
BS12674.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12617-RC | 291 | CG12617-PC | 1..291 | 17..307 | 1455 | 100 | Plus |
CG12617-RB | 291 | CG12617-PB | 1..291 | 17..307 | 1455 | 100 | Plus |
CG12617-RA | 291 | CG12617-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12617-RC | 1022 | CG12617-RC | 102..395 | 15..308 | 1470 | 100 | Plus |
CG12617-RB | 569 | CG12617-RB | 102..395 | 15..308 | 1470 | 100 | Plus |
CG12617-RA | 538 | CG12617-RA | 102..395 | 15..308 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20294884..20295177 | 15..308 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:05:59 has no hits.
BS12674.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:27 Download gff for
BS12674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:47 Download gff for
BS12674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 84..381 | 10..308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:27 Download gff for
BS12674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 96..380 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:27 Download gff for
BS12674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 84..381 | 10..308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:52 Download gff for
BS12674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12617-RA | 104..388 | 17..301 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:52 Download gff for
BS12674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20294886..20295170 | 17..301 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:27 Download gff for
BS12674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20294886..20295170 | 17..301 | 100 | | Plus |
BS12674.pep Sequence
Translation from 16 to 306
> BS12674.pep
MSISLIRKHLNEMGTLKLRSSMGRNYIPMAGPPRFPMSSAQRLIFGCGSL
VVMMIIPFYCLFSLPRWSRMHLGLPPEEDEQAEEPPPQEEKDKEKK*
BS12674.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12617-PC | 96 | CG12617-PC | 1..96 | 1..96 | 510 | 100 | Plus |
CG12617-PB | 96 | CG12617-PB | 1..96 | 1..96 | 510 | 100 | Plus |
CG12617-PA | 96 | CG12617-PA | 1..96 | 1..96 | 510 | 100 | Plus |