Clone BS12674 Report

Search the DGRC for BS12674

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG12617-RA
Protein status:BS12674.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12674.5prime Sequence

321 bp (321 high quality bases) assembled on 2006-10-13

> BS12674.5prime
GAAGTTATCAGTCGACATGAGTATTTCTTTAATACGCAAACATCTGAACG
AGATGGGGACCCTTAAGCTCCGATCGTCCATGGGTCGGAACTATATTCCC
ATGGCCGGTCCTCCTCGATTTCCGATGAGTTCAGCGCAGCGTTTGATCTT
TGGTTGCGGTTCCTTGGTTGTCATGATGATCATTCCCTTCTACTGCCTCT
TCAGCCTGCCCCGATGGTCGAGGATGCATTTGGGACTTCCGCCGGAGGAG
GACGAGCAGGCGGAGGAGCCTCCACCACAAGAGGAAAAGGACAAGGAGAA
GAAATAGAAGCTTTCTAGACC

BS12674.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12617-PA 291 CG12617-RA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12617-RC 1022 CG12617-RC 102..395 15..308 1470 100 Plus
CG12617-RB 569 CG12617-RB 102..395 15..308 1470 100 Plus
CG12617-RA 538 CG12617-RA 102..395 15..308 1470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20294884..20295177 15..308 1470 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:03:10 has no hits.

BS12674.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:18 Download gff for BS12674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12617-PA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:44 Download gff for BS12674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 90..387 10..308 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:39 Download gff for BS12674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 98..395 10..308 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:39 Download gff for BS12674.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20294880..20295177 10..308 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:44 Download gff for BS12674.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20294880..20295177 10..308 99   Plus

BS12674.3prime Sequence

321 bp (321 high quality bases) assembled on 2006-10-13

> BS12674.3prime
ATGGTCTAGAAAGCTTCTATTTCTTCTCCTTGTCCTTTTCCTCTTGTGGT
GGAGGCTCCTCCGCCTGCTCGTCCTCCTCCGGCGGAAGTCCCAAATGCAT
CCTCGACCATCGGGGCAGGCTGAAGAGGCAGTAGAAGGGAATGATCATCA
TGACAACCAAGGAACCGCAACCAAAGATCAAACGCTGCGCTGAACTCATC
GGAAATCGAGGAGGACCGGCCATGGGAATATAGTTCCGACCCATGGACGA
TCGGAGCTTAAGGGTCCCCATCTCGTTCAGATGTTTGCGTATTAAAGAAA
TACTCATGTCGACTGATAACT

BS12674.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12617-PA 291 CG12617-RA 1..291 307..17 1455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12617-RC 1022 CG12617-RC 102..395 309..16 1470 100 Minus
CG12617-RB 569 CG12617-RB 102..395 309..16 1470 100 Minus
CG12617-RA 538 CG12617-RA 102..395 309..16 1470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20294884..20295177 309..16 1470 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:01:28 has no hits.

BS12674.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:17 Download gff for BS12674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12617-PA 1..291 17..307 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:02 Download gff for BS12674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 90..387 16..314 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:54 Download gff for BS12674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 98..395 16..314 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:54 Download gff for BS12674.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20294880..20295177 16..314 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:02 Download gff for BS12674.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20294880..20295177 16..314 99   Minus

BS12674.complete Sequence

323 bp assembled on 2006-11-01

GenBank Submission: FJ637265

> BS12674.complete
GAAGTTATCAGTCGACATGAGTATTTCTTTAATACGCAAACATCTGAACG
AGATGGGGACCCTTAAGCTCCGATCGTCCATGGGTCGGAACTATATTCCC
ATGGCCGGTCCTCCTCGATTTCCGATGAGTTCAGCGCAGCGTTTGATCTT
TGGTTGCGGTTCCTTGGTTGTCATGATGATCATTCCCTTCTACTGCCTCT
TCAGCCTGCCCCGATGGTCGAGGATGCATTTGGGACTTCCGCCGGAGGAG
GACGAGCAGGCGGAGGAGCCTCCACCACAAGAGGAAAAGGACAAGGAGAA
GAAATAGAAGCTTTCTAGACCAT

BS12674.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12617-RC 291 CG12617-PC 1..291 17..307 1455 100 Plus
CG12617-RB 291 CG12617-PB 1..291 17..307 1455 100 Plus
CG12617-RA 291 CG12617-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12617-RC 1022 CG12617-RC 102..395 15..308 1470 100 Plus
CG12617-RB 569 CG12617-RB 102..395 15..308 1470 100 Plus
CG12617-RA 538 CG12617-RA 102..395 15..308 1470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20294884..20295177 15..308 1470 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:05:59 has no hits.

BS12674.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:27 Download gff for BS12674.complete
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:47 Download gff for BS12674.complete
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 84..381 10..308 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:27 Download gff for BS12674.complete
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 96..380 17..301 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:27 Download gff for BS12674.complete
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 84..381 10..308 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:52 Download gff for BS12674.complete
Subject Subject Range Query Range Percent Splice Strand
CG12617-RA 104..388 17..301 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:52 Download gff for BS12674.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20294886..20295170 17..301 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:27 Download gff for BS12674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20294886..20295170 17..301 100   Plus

BS12674.pep Sequence

Translation from 16 to 306

> BS12674.pep
MSISLIRKHLNEMGTLKLRSSMGRNYIPMAGPPRFPMSSAQRLIFGCGSL
VVMMIIPFYCLFSLPRWSRMHLGLPPEEDEQAEEPPPQEEKDKEKK*

BS12674.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12617-PC 96 CG12617-PC 1..96 1..96 510 100 Plus
CG12617-PB 96 CG12617-PB 1..96 1..96 510 100 Plus
CG12617-PA 96 CG12617-PA 1..96 1..96 510 100 Plus