Clone Sequence Records
BS12680.5prime Sequence
282 bp (282 high quality bases) assembled on 2006-10-13
> BS12680.5prime
GAAGTTATCAGTCGACATGCGAAACCATCAACGCAGGCCGGGAAAAGCAG
GATTCAGGTTCCCGTATGCAGGTCATCCGCCTGTCACGTGCCTAAGCGCA
CCGGACAACGCAATGCAGGTGCCACCGACAGGTCCTTCGGGGATCGAGGT
ACCTGGGTGTGGGCTTTCCAGCTGCAGTGCATCCAGAGCCATGCGTGACA
AATATTTATTAACTGCCACAACTGCCGGGCATCGGCTTAGAGGATTGATC
TTGGCATTAGAGAGCTAAAAGCTTTCTAGACC
BS12680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32235-PA | 252 | CG32235-RA | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32235-RA | 597 | CG32235-RA | 308..560 | 16..268 | 1265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4859847..4860099 | 268..16 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:54:05 has no hits.
BS12680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:21 Download gff for
BS12680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-PA | 1..252 | 17..268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:41 Download gff for
BS12680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 304..560 | 9..268 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:12 Download gff for
BS12680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 304..560 | 9..268 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:12 Download gff for
BS12680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4859847..4860103 | 9..268 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:41 Download gff for
BS12680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4859847..4860103 | 9..268 | 98 | | Minus |
BS12680.3prime Sequence
282 bp (282 high quality bases) assembled on 2006-10-13
> BS12680.3prime
ATGGTCTAGAAAGCTTTTAGCTCTCTAATGCCAAGATCAATCCTCTAAGC
CGATGCCCGGCAGTTGTGGCAGTTAATAAATATTTGTCACGCATGGCTCT
GGATGCACTGCAGCTGGAAAGCCCACACCCAGGTACCTCGATCCCCGAAG
GACCTGTCGGTGGCACCTGCATTGCGTTGTCCGGTGCGCTTAGGCACGTG
ACAGGCGGATGACCTGCATACGGGAACCTGAATCCTGCTTTTCCCGGCCT
GCGTTGATGGTTTCGCATGTCGACTGATAACT
BS12680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32235-PA | 252 | CG32235-RA | 1..252 | 268..17 | 1260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32235-RA | 597 | CG32235-RA | 308..560 | 269..17 | 1265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4859847..4860099 | 17..269 | 1265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:19:58 has no hits.
BS12680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:21 Download gff for
BS12680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-PA | 1..252 | 17..268 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:49 Download gff for
BS12680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 304..560 | 17..276 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:00 Download gff for
BS12680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 304..560 | 17..276 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:00 Download gff for
BS12680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4859847..4860103 | 17..276 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:49 Download gff for
BS12680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4859847..4860103 | 17..276 | 98 | | Plus |
BS12680.complete Sequence
284 bp assembled on 2006-11-01
GenBank Submission: FJ637268
> BS12680.complete
GAAGTTATCAGTCGACATGCGAAACCATCAACGCAGGCCGGGAAAAGCAG
GATTCAGGTTCCCGTATGCAGGTCATCCGCCTGTCACGTGCCTAAGCGCA
CCGGACAACGCAATGCAGGTGCCACCGACAGGTCCTTCGGGGATCGAGGT
ACCTGGGTGTGGGCTTTCCAGCTGCAGTGCATCCAGAGCCATGCGTGACA
AATATTTATTAACTGCCACAACTGCCGGGCATCGGCTTAGAGGATTGATC
TTGGCATTAGAGAGCTAAAAGCTTTCTAGACCAT
BS12680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32235-RA | 252 | CG32235-PA | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32235-RA | 597 | CG32235-RA | 308..560 | 16..268 | 1265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4859847..4860099 | 268..16 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:50:24 has no hits.
BS12680.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:57 Download gff for
BS12680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 1..252 | 17..268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:45 Download gff for
BS12680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 304..560 | 9..268 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:52 Download gff for
BS12680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 309..558 | 17..266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:57 Download gff for
BS12680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 304..560 | 9..268 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:51 Download gff for
BS12680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32235-RA | 309..558 | 17..266 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:51 Download gff for
BS12680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4859849..4860098 | 17..266 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:52 Download gff for
BS12680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4859849..4860098 | 17..266 | 100 | | Minus |
BS12680.pep Sequence
Translation from 16 to 267
> BS12680.pep
MRNHQRRPGKAGFRFPYAGHPPVTCLSAPDNAMQVPPTGPSGIEVPGCGL
SSCSASRAMRDKYLLTATTAGHRLRGLILALES*
BS12680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32235-PA | 83 | CG32235-PA | 1..83 | 1..83 | 444 | 100 | Plus |
