Clone BS12681 Report

Search the DGRC for BS12681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG7580-RA
Protein status:BS12681.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12681.3prime Sequence

300 bp (300 high quality bases) assembled on 2006-10-13

> BS12681.3prime
ATGGTCTAGAAAGCTTTTATTCGTCGTTCGCGTAGTCAGCGGGGTTCTTG
CGCAGCAGGGCGGTGTGCTTGCGTTCGGTCAGATCGTAGATCAGGTATCC
CACGATGAAGGGGGGAGTAACGATGAAGACGTTGGAGCGGAAGCGACGCA
CCATGTTGGGCAGTCCCTTGCTGATCGCTCCAGCGAAGGCGCGCTGCTCG
AAGGGCGACAGCTTGTAGGTGACGATGCCGTGCACCTTGGCCAAGTTGCC
AAAATGCTGGCCATTCAGGATCGAGGATAGACGCATGTCGACTGATAACT

BS12681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7580-PA 270 CG7580-RA 1..270 286..17 1350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7580-RD 425 CG7580-RD 97..367 287..17 1355 100 Minus
CG7580-RC 625 CG7580-RC 297..567 287..17 1355 100 Minus
CG7580-RB 746 CG7580-RB 97..367 287..17 1355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17475419..17475594 287..112 880 100 Minus
3L 28110227 3L 17475651..17475745 111..17 475 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:20:22 has no hits.

BS12681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:22 Download gff for BS12681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7580-PA 1..270 17..286 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:52 Download gff for BS12681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7580-RB 91..369 13..294 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:04 Download gff for BS12681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7580-RB 91..369 13..294 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:04 Download gff for BS12681.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17475413..17475594 112..294 97 -> Minus
3L 17475651..17475747 13..111 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:52 Download gff for BS12681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17468513..17468694 112..294 97 -> Minus
arm_3L 17468751..17468847 13..111 97   Minus

BS12681.5prime Sequence

300 bp (300 high quality bases) assembled on 2006-10-13

> BS12681.5prime
GAAGTTATCAGTCGACATGCGTCTATCCTCGATCCTGAATGGCCAGCATT
TTGGCAACTTGGCCAAGGTGCACGGCATCGTCACCTACAAGCTGTCGCCC
TTCGAGCAGCGCGCCTTCGCTGGAGCGATCAGCAAGGGACTGCCCAACAT
GGTGCGTCGCTTCCGCTCCAACGTCTTCATCGTTACTCCCCCCTTCATCG
TGGGATACCTGATCTACGATCTGACCGAACGCAAGCACACCGCCCTGCTG
CGCAAGAACCCCGCTGACTACGCGAACGACGAATAAAAGCTTTCTAGACC

BS12681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7580-PA 270 CG7580-RA 1..270 17..286 1350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7580-RD 425 CG7580-RD 97..367 16..286 1355 100 Plus
CG7580-RC 625 CG7580-RC 297..567 16..286 1355 100 Plus
CG7580-RB 746 CG7580-RB 97..367 16..286 1355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17475419..17475594 16..191 880 100 Plus
3L 28110227 3L 17475651..17475745 192..286 475 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:43:21 has no hits.

BS12681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:22 Download gff for BS12681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7580-PA 1..270 17..286 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:01 Download gff for BS12681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7580-RB 91..369 9..290 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:54 Download gff for BS12681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7580-RB 91..369 9..290 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:54 Download gff for BS12681.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17475413..17475594 9..191 97 -> Plus
3L 17475651..17475747 192..290 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:01 Download gff for BS12681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17468513..17468694 9..191 97 -> Plus
arm_3L 17468751..17468847 192..290 97   Plus

BS12681.complete Sequence

302 bp assembled on 2006-11-01

GenBank Submission: FJ637269

> BS12681.complete
GAAGTTATCAGTCGACATGCGTCTATCCTCGATCCTGAATGGCCAGCATT
TTGGCAACTTGGCCAAGGTGCACGGCATCGTCACCTACAAGCTGTCGCCC
TTCGAGCAGCGCGCCTTCGCTGGAGCGATCAGCAAGGGACTGCCCAACAT
GGTGCGTCGCTTCCGCTCCAACGTCTTCATCGTTACTCCCCCCTTCATCG
TGGGATACCTGATCTACGATCTGACCGAACGCAAGCACACCGCCCTGCTG
CGCAAGAACCCCGCTGACTACGCGAACGACGAATAAAAGCTTTCTAGACC
AT

BS12681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7580-RD 270 CG7580-PD 1..270 17..286 1350 100 Plus
CG7580-RC 270 CG7580-PC 1..270 17..286 1350 100 Plus
CG7580-RB 270 CG7580-PB 1..270 17..286 1350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7580-RD 425 CG7580-RD 97..367 16..286 1355 100 Plus
CG7580-RC 625 CG7580-RC 297..567 16..286 1355 100 Plus
CG7580-RB 746 CG7580-RB 97..367 16..286 1355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17475419..17475594 16..191 880 100 Plus
3L 28110227 3L 17475651..17475745 192..286 475 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:04:36 has no hits.

BS12681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:12 Download gff for BS12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7580-RA 1..270 17..286 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:36 Download gff for BS12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7580-RA 320..598 9..290 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:54 Download gff for BS12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7580-RB 98..365 17..284 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:12 Download gff for BS12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7580-RA 320..598 9..290 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:42 Download gff for BS12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7580-RB 98..365 17..284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:42 Download gff for BS12681.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17475420..17475594 17..191 100 -> Plus
3L 17475651..17475743 192..284 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:54 Download gff for BS12681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17468520..17468694 17..191 100 -> Plus
arm_3L 17468751..17468843 192..284 100   Plus

BS12681.pep Sequence

Translation from 16 to 285

> BS12681.pep
MRLSSILNGQHFGNLAKVHGIVTYKLSPFEQRAFAGAISKGLPNMVRRFR
SNVFIVTPPFIVGYLIYDLTERKHTALLRKNPADYANDE*

BS12681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7580-PD 89 CG7580-PD 1..89 1..89 460 100 Plus
CG7580-PC 89 CG7580-PC 1..89 1..89 460 100 Plus
CG7580-PB 89 CG7580-PB 1..89 1..89 460 100 Plus
CG7580-PA 89 CG7580-PA 1..89 1..89 460 100 Plus