Clone Sequence Records
BS12683.5prime Sequence
312 bp (312 high quality bases) assembled on 2006-10-13
> BS12683.5prime
GAAGTTATCCCTCGACATGGAAGACAAAATTCTGACATACCAGTTTACAA
GGAACAATGCCCGTTGGACTGCGAGGGACCATGGAGAGCCTATTGCAAAT
ACACTTGCAAACATTGTAAGGACATCAACCAGCAGAAGGAGACCTGTGCA
CCGGCACCGCTTAACGCGTCAAGTTAAGCCAGTAAGGGCACCTCTAACCA
CCAACAACAGCAGCTTGGGCAGCAGGCACCGGCACCGTATGGAAAGGAAA
AGGAAACCGACAGCGCTTCCGAGAGCGCAATTTTTTTTTTCTCAATAGAA
GCTTTCTAGACC
BS12683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:29:56 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 11:11:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24265818..24266080 | 36..298 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 3360499..3360586 | 289..202 | 350 | 93.2 | Minus |
3R | 32079331 | 3R | 3360598..3360778 | 214..36 | 350 | 81.5 | Minus |
U | 3151297 | U | 1329240..1329397 | 192..36 | 315 | 82 | Minus |
Blast to na_te.dros performed 2015-02-12 11:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 799..1097 | 36..300 | 1047 | 86.6 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 824..909 | 36..118 | 180 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2403 | 197..264 | 125 | 70 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1041..1155 | 111..237 | 101 | 61.7 | Plus |
BS12683.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:37 Download gff for
BS12683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24265575..24265593 | 17..35 | 100 | -> | Plus |
3L | 24265818..24266084 | 36..303 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:37 Download gff for
BS12683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24265575..24265593 | 17..35 | 100 | -> | Plus |
3L | 24265818..24266084 | 36..303 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:24 Download gff for
BS12683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24258675..24258693 | 17..35 | 100 | -> | Plus |
arm_3L | 24258918..24259184 | 36..303 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:24 Download gff for
BS12683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24258675..24258693 | 17..35 | 100 | -> | Plus |
arm_3L | 24258918..24259184 | 36..303 | 99 | | Plus |
BS12683.complete Sequence
314 bp assembled on 2006-11-01
> BS12683.complete
GAAGTTATCAGTCGACATGGAAGACAAAATTCTGACATACCAGTTTACAA
GGAACAATGCCCGTTGGACTGCGAGGGACCATGGAGAGCCTATTGCAAAT
ACACTTGCAAACATTGTAAGGACATCAACCAGCAGAAGGAGACCTGTGCA
CCGGCACCGCTTAACGCGTCAAGTTAAGCCAGTAAGGGCACCTCTAACCA
CCAACAACAGCAGCTTGGGCAGCAGGCACCGGCACCGTATGGAAAGGAAA
AGGAAACCGACAGCGCTTCCGAGAGCGCAATTTTTTTTTTCTCAATAGAA
GCTTTCTAGACCAT
BS12683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:39:22 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 16:39:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24265818..24266080 | 36..298 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 3360499..3360586 | 289..202 | 350 | 93.2 | Minus |
3R | 32079331 | 3R | 3360598..3360778 | 214..36 | 350 | 81.5 | Minus |
U | 3151297 | U | 1329240..1329397 | 192..36 | 315 | 82 | Minus |
Y | 3667352 | Y | 377846..378003 | 36..192 | 315 | 82 | Plus |
Blast to na_te.dros performed 2014-11-27 16:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 799..1097 | 36..300 | 1047 | 86.6 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 824..909 | 36..118 | 180 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2403 | 197..264 | 125 | 70 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1041..1155 | 111..237 | 101 | 61.7 | Plus |
BS12683.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:18:34 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 14:18:35 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:35 Download gff for
BS12683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24265575..24265593 | 17..35 | 100 | -> | Plus |
3L | 24265818..24266080 | 36..298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:35 Download gff for
BS12683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24265575..24265593 | 17..35 | 100 | -> | Plus |
3L | 24265818..24266080 | 36..298 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:43 Download gff for
BS12683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24258675..24258693 | 17..35 | 100 | -> | Plus |
arm_3L | 24258918..24259180 | 36..298 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:43 Download gff for
BS12683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24258675..24258693 | 17..35 | 100 | -> | Plus |
arm_3L | 24258918..24259180 | 36..298 | 100 | | Plus |
BS12683.pep Sequence
Translation from 16 to 297
> BS12683.pep
MEDKILTYQFTRNNARWTARDHGEPIANTLANIVRTSTSRRRPVHRHRLT
RQVKPVRAPLTTNNSSLGSRHRHRMERKRKPTALPRAQFFFSQ*
Sequence BS12683.pep has no blast hits.