Clone Sequence Records
BS12687.3prime Sequence
720 bp (720 high quality bases) assembled on 2006-10-13
> BS12687.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGGCAATGGCTCGTCGTCGGAACTCG
GCCCAAATCTCACAGAGCAGCGGTTTCGCCAGACAATTGCACTCCTTCAG
TGGCGGGGCATCGGGCTTGAGACGTCGGCACTCGGAGAAAGATGGATATG
GCGTCCGGGGCTTCACACACGGCAGGGGTCCTCGTTCCCTTCTGCATGAG
GGTGGTCGGCGACCATCGCGATGGCAGCGACGGGCCAGACGGGGACACAG
ATCCTCCGACGGATCCGGACAAGGCTGCGGGCAGGCGGTCGATGGCTTCG
CCGATGGCTTTCGCCGCTTGATAGGAGCCGGCTTAGCCTTGGCGAAACAG
CAAATCTTCTTGGGCTTAATCTGGATGGGAGGGCAGGCCACCCATGTCTG
CCAGTACTTCCGCTTGGCCTTGTCCGACTCGACGTAGTAGATATCGTCGA
AGCGCGGATTGAACGGACAGGCGGTGTCGTCGGGATCACAGAATGGGTTC
AGCCACATGGACTGTGCCTTGACCATCTTCCTCTTCTTCTTGGGCGGAGC
CTGCAGATTGGGTTTGCCGCAGGGGAACTTGGTCAACACCTTCGGGCACC
GGCTCGGCCCCTTCTTTTCACAACCGGATGCAAATCGCACACAGCTGTTA
ACCGCACCAAAAATTGGACGGAACAGTACTCGGGAGGGATTAACACTCAG
TGCCATGTCGACTGATAACT
BS12687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-PA | 690 | CG33340-RA | 1..690 | 706..17 | 3450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-RA | 1152 | CG33340-RA | 137..827 | 706..16 | 3455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24363274..24363964 | 706..16 | 3455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:49:45 has no hits.
BS12687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:26 Download gff for
BS12687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-PA | 1..690 | 17..706 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:00 Download gff for
BS12687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..829 | 13..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:59 Download gff for
BS12687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..829 | 13..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:59 Download gff for
BS12687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24363274..24363966 | 13..706 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:00 Download gff for
BS12687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20188996..20189688 | 13..706 | 99 | | Minus |
BS12687.5prime Sequence
720 bp (720 high quality bases) assembled on 2006-10-13
> BS12687.5prime
GAAGTTATCAGTCGACATGGCACTGAGTGTTAATCCCTCCCGAGTACTGT
TCCGTCCAATTTTTGGTGCGGTTAACAGCTGTGTGCGATTTGCATCCGGT
TGTGAAAAGAAGGGGCCGAGCCGGTGCCCGAAGGTGTTGACCAAGTTCCC
CTGCGGCAAACCCAATCTGCAGGCTCCGCCCAAGAAGAAGAGGAAGATGG
TCAAGGCACAGTCCATGTGGCTGAACCCATTCTGTGATCCCGACGACACC
GCCTGTCCGTTCAATCCGCGCTTCGACGATATCTACTACGTCGAGTCGGA
CAAGGCCAAGCGGAAGTACTGGCAGACATGGGTGGCCTGCCCTCCCATCC
AGATTAAGCCCAAGAAGATTTGCTGTTTCGCCAAGGCTAAGCCGGCTCCT
ATCAAGCGGCGAAAGCCATCGGCGAAGCCATCGACCGCCTGCCCGCAGCC
TTGTCCGGATCCGTCGGAGGATCTGTGTCCCCGTCTGGCCCGTCGCTGCC
ATCGCGATGGTCGCCGACCACCCTCATGCAGAAGGGAACGAGGACCCCTG
CCGTGTGTGAAGCCCCGGACGCCATATCCATCTTTCTCCGAGTGCCGACG
TCTCAAGCCCGATGCCCCGCCACTGAAGGAGTGCAATTGTCTGGCGAAAC
CGCTGCTCTGTGAGATTTGGGCCGAGTTCCGACGACGAGCCATTGCCAAG
AAGTAGAAGCTTTCTAGACC
BS12687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-PA | 690 | CG33340-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-RA | 1152 | CG33340-RA | 137..827 | 17..707 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24363274..24363964 | 17..707 | 3455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:54:56 has no hits.
BS12687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:26 Download gff for
BS12687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:10 Download gff for
BS12687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..829 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:45 Download gff for
BS12687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..829 | 17..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:45 Download gff for
BS12687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24363274..24363966 | 17..710 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:10 Download gff for
BS12687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20188996..20189688 | 17..710 | 99 | | Plus |
BS12687.complete Sequence
722 bp assembled on 2006-11-01
GenBank Submission: FJ637270
> BS12687.complete
GAAGTTATCAGTCGACATGGCACTGAGTGTTAATCCCTCCCGAGTACTGT
TCCGTCCAATTTTTGGTGCGGTTAACAGCTGTGTGCGATTTGCATCCGGT
TGTGAAAAGAAGGGGCCGAGCCGGTGCCCGAAGGTGTTGACCAAGTTCCC
CTGCGGCAAACCCAATCTGCAGGCTCCGCCCAAGAAGAAGAGGAAGATGG
TCAAGGCACAGTCCATGTGGCTGAACCCATTCTGTGATCCCGACGACACC
GCCTGTCCGTTCAATCCGCGCTTCGACGATATCTACTACGTCGAGTCGGA
CAAGGCCAAGCGGAAGTACTGGCAGACATGGGTGGCCTGCCCTCCCATCC
AGATTAAGCCCAAGAAGATTTGCTGTTTCGCCAAGGCTAAGCCGGCTCCT
ATCAAGCGGCGAAAGCCATCGGCGAAGCCATCGACCGCCTGCCCGCAGCC
TTGTCCGGATCCGTCGGAGGATCTGTGTCCCCGTCTGGCCCGTCGCTGCC
ATCGCGATGGTCGCCGACCACCCTCATGCAGAAGGGAACGAGGACCCCTG
CCGTGTGTGAAGCCCCGGACGCCATATCCATCTTTCTCCGAGTGCCGACG
TCTCAAGCCCGATGCCCCGCCACTGAAGGAGTGCAATTGTCTGGCGAAAC
CGCTGCTCTGTGAGATTTGGGCCGAGTTCCGACGACGAGCCATTGCCAAG
AAGTAGAAGCTTTCTAGACCAT
BS12687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-RA | 690 | CG33340-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-RA | 1152 | CG33340-RA | 137..827 | 17..707 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24363274..24363964 | 17..707 | 3455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:03:37 has no hits.
BS12687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:40 Download gff for
BS12687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:14 Download gff for
BS12687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 128..820 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:13 Download gff for
BS12687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..826 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:41 Download gff for
BS12687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 128..820 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:09 Download gff for
BS12687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..826 | 17..706 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:09 Download gff for
BS12687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24363274..24363963 | 17..706 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:13 Download gff for
BS12687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20188996..20189685 | 17..706 | 100 | | Plus |
BS12687.pep Sequence
Translation from 16 to 705
> BS12687.pep
MALSVNPSRVLFRPIFGAVNSCVRFASGCEKKGPSRCPKVLTKFPCGKPN
LQAPPKKKRKMVKAQSMWLNPFCDPDDTACPFNPRFDDIYYVESDKAKRK
YWQTWVACPPIQIKPKKICCFAKAKPAPIKRRKPSAKPSTACPQPCPDPS
EDLCPRLARRCHRDGRRPPSCRRERGPLPCVKPRTPYPSFSECRRLKPDA
PPLKECNCLAKPLLCEIWAEFRRRAIAKK*
BS12687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-PA | 229 | CG33340-PA | 1..229 | 1..229 | 1296 | 100 | Plus |
| CG2127-PB | 289 | CG2127-PB | 64..275 | 23..224 | 338 | 38 | Plus |
| CG2127-PA | 305 | CG2127-PA | 80..291 | 23..224 | 338 | 38 | Plus |
| CG8701-PA | 246 | CG8701-PA | 52..231 | 46..223 | 295 | 41.2 | Plus |
| hubl-PB | 291 | CG30364-PB | 69..268 | 28..216 | 244 | 32.9 | Plus |
