Clone Sequence Records
BS12688.3prime Sequence
678 bp (678 high quality bases) assembled on 2006-10-13
> BS12688.3prime
ATGGTCTAGAAAGCTTTCAGCCCTCCGCCGTATGAACGTGAGGCACTGGC
TCCTGACCCTGCTGCTGATGCAGTTGTTGCGGAGGATTGTTCTGAATACT
GGGGTGCTGATGGACTGTCGGCTCCTGCTCCTTATCTTCCATTTCCATCT
GCTCCTGTGGCTCGAGCGGCGTCTGCGGCTGCTGGGTTTCCTCGGAGGAC
TCGGCATTAGGGGGATCCGGATCACCATCACTGCTGACCAGCGAGTAGTT
CGGGGGCTTCTTAAGCAGGTAGCGTGTGTTCGGGTTCTGTCTCGTTTCGA
GCTCCAGGCGATCGATCAGCCAGCCCTGTTTCTGGTTGTTTGAGGCCCAG
AAATAGACGGTCCCCCTGTCCTTGGGACCCTGGACATGGAACTGCAGCTG
GGCCTTGTCCTCGTCACAGCGATTCTTCTCGTTGGACAGATTAAAGCCCG
ACTCCTTGATGGGCTCGCCCAGCAGACCGACCGCTCCACTGTGCTGGCGT
AGCTGCTGGATGGCCAACTGATAGAACTCCGTCTGGCGTACACGGTCCTC
AAGTCGCCAGCGCATGTAGGCCAGGCCCGAGATGGAGGCGAGTGCTCCGC
AGATGCATATGCTGCCCATCGTTCGCTTCGAGGGCAGACCGATACGCAAC
TTTAAGGTTGGCATGTCGACTGATAACT
BS12688.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31913-PA | 648 | CG31913-RA | 1..648 | 664..17 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31913-RA | 863 | CG31913-RA | 89..737 | 665..17 | 3245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5784119..5784767 | 665..17 | 3245 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2462 | 184..59 | 154 | 60.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2507 | 184..59 | 133 | 59.2 | Minus |
BS12688.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:26 Download gff for
BS12688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-PA | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:29 Download gff for
BS12688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 86..737 | 17..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:38 Download gff for
BS12688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 86..737 | 17..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:38 Download gff for
BS12688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5784116..5784771 | 14..668 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:29 Download gff for
BS12688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5784116..5784771 | 14..668 | 99 | -> | Minus |
BS12688.5prime Sequence
678 bp (678 high quality bases) assembled on 2006-10-13
> BS12688.5prime
GAAGTTATCAGTCGACATGCCAACCTTAAAGTTGCGTATCGGTCTGCCCT
CGAAGCGAACGATGGGCAGCATATGCATCTGCGGAGCACTCGCCTCCATC
TCGGGCCTGGCCTACATGCGCTGGCGACTTGAGGACCGTGTACGCCAGAC
GGAGTTCTATCAGTTGGCCATCCAGCAGCTACGCCAGCACAGTGGAGCGG
TCGGTCTGCTGGGCGAGCCCATCAAGGAGTCGGGCTTTAATCTGTCCAAC
GAGAAGAATCGCTGTGACGAGGACAAGGCCCAGCTGCAGTTCCATGTCCA
GGGTCCCAAGGACAGGGGGACCGTCTATTTCTGGGCCTCAAACAACCAGA
AACAGGGCTGGCTGATCGATCGCCTGGAGCTCGAAACGAGACAGAACCCG
AACACACGCTACCTGCTTAAGAAGCCCCCGAACTACTCGCTGGTCAGCAG
TGATGGTGATCCGGATCCCCCTAATGCCGAGTCCTCCGAGGAAACCCAGC
AGCCGCAGACGCCGCTCGAGCCACAGGAGCAGATGGAAATGGAAGATAAG
GAGCAGGAGCCGACAGTCCATCAGCACCCCAGTATTCAGAACAATCCTCC
GCAACAACTGCATCAGCAGCAGGGTCAGGAGCCAGTGCCTCACGTTCATA
CGGCGGAGGGCTGAAAGCTTTCTAGACC
BS12688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31913-PA | 648 | CG31913-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31913-RA | 863 | CG31913-RA | 89..737 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5784119..5784767 | 16..664 | 3245 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2462 | 497..622 | 154 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2507 | 497..622 | 133 | 59.2 | Plus |
BS12688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:27 Download gff for
BS12688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:31 Download gff for
BS12688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 86..737 | 13..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:53 Download gff for
BS12688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 86..737 | 13..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:53 Download gff for
BS12688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5784116..5784771 | 13..667 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:31 Download gff for
BS12688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5784116..5784771 | 13..667 | 99 | -> | Plus |
BS12688.complete Sequence
680 bp assembled on 2006-11-01
GenBank Submission: FJ637271
> BS12688.complete
GAAGTTATCAGTCGACATGCCAACCTTAAAGTTGCGTATCGGTCTGCCCT
CGAAGCGAACGATGGGCAGCATATGCATCTGCGGAGCACTCGCCTCCATC
TCGGGCCTGGCCTACATGCGCTGGCGACTTGAGGACCGTGTACGCCAGAC
GGAGTTCTATCAGTTGGCCATCCAGCAGCTACGCCAGCACAGTGGAGCGG
TCGGTCTGCTGGGCGAGCCCATCAAGGAGTCGGGCTTTAATCTGTCCAAC
GAGAAGAATCGCTGTGACGAGGACAAGGCCCAGCTGCAGTTCCATGTCCA
GGGTCCCAAGGACAGGGGGACCGTCTATTTCTGGGCCTCAAACAACCAGA
AACAGGGCTGGCTGATCGATCGCCTGGAGCTCGAAACGAGACAGAACCCG
AACACACGCTACCTGCTTAAGAAGCCCCCGAACTACTCGCTGGTCAGCAG
TGATGGTGATCCGGATCCCCCTAATGCCGAGTCCTCCGAGGAAACCCAGC
AGCCGCAGACGCCGCTCGAGCCACAGGAGCAGATGGAAATGGAAGATAAG
GAGCAGGAGCCGACAGTCCATCAGCACCCCAGTATTCAGAACAATCCTCC
GCAACAACTGCATCAGCAGCAGGGTCAGGAGCCAGTGCCTCACGTTCATA
CGGCGGAGGGCTGAAAGCTTTCTAGACCAT
BS12688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31913-RA | 648 | CG31913-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31913-RA | 863 | CG31913-RA | 89..737 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5784119..5784767 | 16..664 | 3245 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2462 | 497..622 | 154 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2507 | 497..622 | 133 | 59.2 | Plus |
BS12688.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:42 Download gff for
BS12688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:39 Download gff for
BS12688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 86..737 | 13..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:43 Download gff for
BS12688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 90..736 | 17..663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:43 Download gff for
BS12688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 86..737 | 13..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:32 Download gff for
BS12688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31913-RA | 90..736 | 17..663 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:32 Download gff for
BS12688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5784120..5784766 | 17..663 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:43 Download gff for
BS12688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5784120..5784766 | 17..663 | 100 | | Plus |
BS12688.pep Sequence
Translation from 16 to 663
> BS12688.pep
MPTLKLRIGLPSKRTMGSICICGALASISGLAYMRWRLEDRVRQTEFYQL
AIQQLRQHSGAVGLLGEPIKESGFNLSNEKNRCDEDKAQLQFHVQGPKDR
GTVYFWASNNQKQGWLIDRLELETRQNPNTRYLLKKPPNYSLVSSDGDPD
PPNAESSEETQQPQTPLEPQEQMEMEDKEQEPTVHQHPSIQNNPPQQLHQ
QQGQEPVPHVHTAEG*
BS12688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31913-PA | 215 | CG31913-PA | 1..215 | 1..215 | 1153 | 100 | Plus |
CG15653-PA | 170 | CG15653-PA | 7..167 | 11..165 | 441 | 51.6 | Plus |