Clone BS12688 Report

Search the DGRC for BS12688

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG31913-RA
Protein status:BS12688.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12688.3prime Sequence

678 bp (678 high quality bases) assembled on 2006-10-13

> BS12688.3prime
ATGGTCTAGAAAGCTTTCAGCCCTCCGCCGTATGAACGTGAGGCACTGGC
TCCTGACCCTGCTGCTGATGCAGTTGTTGCGGAGGATTGTTCTGAATACT
GGGGTGCTGATGGACTGTCGGCTCCTGCTCCTTATCTTCCATTTCCATCT
GCTCCTGTGGCTCGAGCGGCGTCTGCGGCTGCTGGGTTTCCTCGGAGGAC
TCGGCATTAGGGGGATCCGGATCACCATCACTGCTGACCAGCGAGTAGTT
CGGGGGCTTCTTAAGCAGGTAGCGTGTGTTCGGGTTCTGTCTCGTTTCGA
GCTCCAGGCGATCGATCAGCCAGCCCTGTTTCTGGTTGTTTGAGGCCCAG
AAATAGACGGTCCCCCTGTCCTTGGGACCCTGGACATGGAACTGCAGCTG
GGCCTTGTCCTCGTCACAGCGATTCTTCTCGTTGGACAGATTAAAGCCCG
ACTCCTTGATGGGCTCGCCCAGCAGACCGACCGCTCCACTGTGCTGGCGT
AGCTGCTGGATGGCCAACTGATAGAACTCCGTCTGGCGTACACGGTCCTC
AAGTCGCCAGCGCATGTAGGCCAGGCCCGAGATGGAGGCGAGTGCTCCGC
AGATGCATATGCTGCCCATCGTTCGCTTCGAGGGCAGACCGATACGCAAC
TTTAAGGTTGGCATGTCGACTGATAACT

BS12688.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-PA 648 CG31913-RA 1..648 664..17 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-RA 863 CG31913-RA 89..737 665..17 3245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5784119..5784767 665..17 3245 100 Minus
Blast to na_te.dros performed 2015-02-12 11:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2462 184..59 154 60.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2507 184..59 133 59.2 Minus

BS12688.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:26 Download gff for BS12688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31913-PA 1..648 17..664 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:29 Download gff for BS12688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 86..737 17..668 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:38 Download gff for BS12688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 86..737 17..668 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:38 Download gff for BS12688.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5784116..5784771 14..668 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:29 Download gff for BS12688.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5784116..5784771 14..668 99 -> Minus

BS12688.5prime Sequence

678 bp (678 high quality bases) assembled on 2006-10-13

> BS12688.5prime
GAAGTTATCAGTCGACATGCCAACCTTAAAGTTGCGTATCGGTCTGCCCT
CGAAGCGAACGATGGGCAGCATATGCATCTGCGGAGCACTCGCCTCCATC
TCGGGCCTGGCCTACATGCGCTGGCGACTTGAGGACCGTGTACGCCAGAC
GGAGTTCTATCAGTTGGCCATCCAGCAGCTACGCCAGCACAGTGGAGCGG
TCGGTCTGCTGGGCGAGCCCATCAAGGAGTCGGGCTTTAATCTGTCCAAC
GAGAAGAATCGCTGTGACGAGGACAAGGCCCAGCTGCAGTTCCATGTCCA
GGGTCCCAAGGACAGGGGGACCGTCTATTTCTGGGCCTCAAACAACCAGA
AACAGGGCTGGCTGATCGATCGCCTGGAGCTCGAAACGAGACAGAACCCG
AACACACGCTACCTGCTTAAGAAGCCCCCGAACTACTCGCTGGTCAGCAG
TGATGGTGATCCGGATCCCCCTAATGCCGAGTCCTCCGAGGAAACCCAGC
AGCCGCAGACGCCGCTCGAGCCACAGGAGCAGATGGAAATGGAAGATAAG
GAGCAGGAGCCGACAGTCCATCAGCACCCCAGTATTCAGAACAATCCTCC
GCAACAACTGCATCAGCAGCAGGGTCAGGAGCCAGTGCCTCACGTTCATA
CGGCGGAGGGCTGAAAGCTTTCTAGACC

BS12688.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-PA 648 CG31913-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-RA 863 CG31913-RA 89..737 16..664 3245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5784119..5784767 16..664 3245 100 Plus
Blast to na_te.dros performed 2015-02-12 11:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2462 497..622 154 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2507 497..622 133 59.2 Plus

BS12688.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:27 Download gff for BS12688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31913-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:31 Download gff for BS12688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 86..737 13..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:53 Download gff for BS12688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 86..737 13..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:53 Download gff for BS12688.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5784116..5784771 13..667 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:31 Download gff for BS12688.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5784116..5784771 13..667 99 -> Plus

BS12688.complete Sequence

680 bp assembled on 2006-11-01

GenBank Submission: FJ637271

> BS12688.complete
GAAGTTATCAGTCGACATGCCAACCTTAAAGTTGCGTATCGGTCTGCCCT
CGAAGCGAACGATGGGCAGCATATGCATCTGCGGAGCACTCGCCTCCATC
TCGGGCCTGGCCTACATGCGCTGGCGACTTGAGGACCGTGTACGCCAGAC
GGAGTTCTATCAGTTGGCCATCCAGCAGCTACGCCAGCACAGTGGAGCGG
TCGGTCTGCTGGGCGAGCCCATCAAGGAGTCGGGCTTTAATCTGTCCAAC
GAGAAGAATCGCTGTGACGAGGACAAGGCCCAGCTGCAGTTCCATGTCCA
GGGTCCCAAGGACAGGGGGACCGTCTATTTCTGGGCCTCAAACAACCAGA
AACAGGGCTGGCTGATCGATCGCCTGGAGCTCGAAACGAGACAGAACCCG
AACACACGCTACCTGCTTAAGAAGCCCCCGAACTACTCGCTGGTCAGCAG
TGATGGTGATCCGGATCCCCCTAATGCCGAGTCCTCCGAGGAAACCCAGC
AGCCGCAGACGCCGCTCGAGCCACAGGAGCAGATGGAAATGGAAGATAAG
GAGCAGGAGCCGACAGTCCATCAGCACCCCAGTATTCAGAACAATCCTCC
GCAACAACTGCATCAGCAGCAGGGTCAGGAGCCAGTGCCTCACGTTCATA
CGGCGGAGGGCTGAAAGCTTTCTAGACCAT

BS12688.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-RA 648 CG31913-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-RA 863 CG31913-RA 89..737 16..664 3245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5784119..5784767 16..664 3245 100 Plus
Blast to na_te.dros performed 2014-11-27 14:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2462 497..622 154 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2507 497..622 133 59.2 Plus

BS12688.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:42 Download gff for BS12688.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:39 Download gff for BS12688.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 86..737 13..664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:43 Download gff for BS12688.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 90..736 17..663 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:43 Download gff for BS12688.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 86..737 13..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:32 Download gff for BS12688.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 90..736 17..663 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:32 Download gff for BS12688.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5784120..5784766 17..663 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:43 Download gff for BS12688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5784120..5784766 17..663 100   Plus

BS12688.pep Sequence

Translation from 16 to 663

> BS12688.pep
MPTLKLRIGLPSKRTMGSICICGALASISGLAYMRWRLEDRVRQTEFYQL
AIQQLRQHSGAVGLLGEPIKESGFNLSNEKNRCDEDKAQLQFHVQGPKDR
GTVYFWASNNQKQGWLIDRLELETRQNPNTRYLLKKPPNYSLVSSDGDPD
PPNAESSEETQQPQTPLEPQEQMEMEDKEQEPTVHQHPSIQNNPPQQLHQ
QQGQEPVPHVHTAEG*

BS12688.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-PA 215 CG31913-PA 1..215 1..215 1153 100 Plus
CG15653-PA 170 CG15653-PA 7..167 11..165 441 51.6 Plus