Clone BS12691 Report

Search the DGRC for BS12691

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG12902-RA
Protein status:BS12691.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12691.complete Sequence

227 bp assembled on 2006-11-01

GenBank Submission: FJ637272

> BS12691.complete
GAAGTTATCAGTCGACATGCCCTGTTGTAAGCGTACCGAGGTCCGCAGGG
TGTGCCGGCCGATGCCGTCGCTCCTTGCCAGGCTCAACTGTACGCCGTGC
AACCGCGTCCTGTTCTTCGTCATCGGCGTGGGACTGGGCGTGCTCTTTGT
GCGCAACAAGGACGACAAGTCGGGCGGCAAAAAGAAGGACGAAGGCAAGG
CCAAGAAGTAGAAGCTTTCTAGACCAT

BS12691.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12902-RC 195 CG12902-PC 1..195 17..211 945 99 Plus
CG12902-RB 195 CG12902-PB 1..195 17..211 945 99 Plus
CG12902-RA 195 CG12902-PA 1..195 17..211 945 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG43397-RB 896 CG43397-RB 387..582 16..211 950 99 Plus
CG43397-RA 1047 CG43397-RA 538..733 16..211 950 99 Plus
CG12902-RC 664 CG12902-RC 155..350 16..211 950 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10355038..10355233 211..16 950 99 Minus
Blast to na_te.dros performed on 2014-11-27 15:20:22 has no hits.

BS12691.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:17 Download gff for BS12691.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RB 1..195 17..211 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:50 Download gff for BS12691.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RA 529..737 5..216 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:55 Download gff for BS12691.complete
Subject Subject Range Query Range Percent Splice Strand
CG43397-RB 388..582 17..211 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:17 Download gff for BS12691.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RA 529..737 5..216 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:25 Download gff for BS12691.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RC 156..350 17..211 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:25 Download gff for BS12691.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10355038..10355232 17..211 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:55 Download gff for BS12691.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6242543..6242737 17..211 98   Minus

BS12691.3prime Sequence

225 bp (225 high quality bases) assembled on 2006-10-13

> BS12691.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGGCCTTGCCTTCGTCCTTCTTTTTG
CCGCCCGACTTGTCGTCCTTGTTGCGCACAAAGAGCACGCCCAGTCCCAC
GCCGATGACGAAGAACAGGACGCGGTTGCACGGCGTACAGTTGAGCCTGG
CAAGGAGCGACGGCATCGGCCGGCACACCCTGCGGACCTCGGTACGCTTA
CAACAGGGCATGTCGACTGATAACT

BS12691.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12902-PA 195 CG12902-RA 1..195 211..17 925 98.9 Minus
CG12902-PB 195 CG12902-RB 1..195 211..17 925 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG43397-RB 896 CG43397-RB 387..582 212..17 950 99 Minus
CG43397-RA 1047 CG43397-RA 538..733 212..17 950 99 Minus
CG12902-RC 664 CG12902-RC 155..350 212..17 950 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10355038..10355233 17..212 950 99 Plus
Blast to na_te.dros performed on 2015-02-12 11:11:44 has no hits.

BS12691.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:29 Download gff for BS12691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12902-PB 1..195 17..211 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:35 Download gff for BS12691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43397-RB 378..586 12..223 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:25 Download gff for BS12691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12902-RC 146..354 12..223 95   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:25 Download gff for BS12691.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10355034..10355240 12..223 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:35 Download gff for BS12691.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6242539..6242745 12..223 95   Plus

BS12691.5prime Sequence

225 bp (225 high quality bases) assembled on 2006-10-13

> BS12691.5prime
GAAGTTATCAGTCGACATGCCCTGTTGTAAGCGTACCGAGGTCCGCAGGG
TGTGCCGGCCGATGCCGTCGCTCCTTGCCAGGCTCAACTGTACGCCGTGC
AACCGCGTCCTGTTCTTCGTCATCGGCGTGGGACTGGGCGTGCTCTTTGT
GCGCAACAAGGACGACAAGTCGGGCGGCAAAAAGAAGGACGAAGGCAAGG
CCAAGAAGTAGAAGCTTTCTAGACC

BS12691.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12902-PA 195 CG12902-RA 1..195 17..211 925 98.9 Plus
CG12902-PB 195 CG12902-RB 1..195 17..211 925 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG43397-RB 896 CG43397-RB 387..582 16..211 950 99 Plus
CG43397-RA 1047 CG43397-RA 538..733 16..211 950 99 Plus
CG12902-RC 664 CG12902-RC 155..350 16..211 950 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10355038..10355233 211..16 950 99 Minus
Blast to na_te.dros performed on 2015-02-10 16:55:21 has no hits.

BS12691.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:29 Download gff for BS12691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12902-PB 1..195 17..211 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:16 Download gff for BS12691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43397-RB 378..586 5..216 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:48 Download gff for BS12691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12902-RC 146..354 5..216 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:48 Download gff for BS12691.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10355034..10355240 5..216 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:16 Download gff for BS12691.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6242539..6242745 5..216 95   Minus

BS12691.pep Sequence

Translation from 16 to 210

> BS12691.pep
MPCCKRTEVRRVCRPMPSLLARLNCTPCNRVLFFVIGVGLGVLFVRNKDD
KSGGKKKDEGKAKK*

BS12691.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12902-PC 64 CG12902-PC 1..64 1..64 345 100 Plus
CG12902-PB 64 CG12902-PB 1..64 1..64 345 100 Plus
CG12902-PA 64 CG12902-PA 1..64 1..64 345 100 Plus