Clone BS12693 Report

Search the DGRC for BS12693

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG32252-RA
Protein status:BS12693.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12693.3prime Sequence

300 bp (300 high quality bases) assembled on 2006-10-13

> BS12693.3prime
ATGGTCTAGAAAGCTTTTACACACAGGTCACATTGCATTCAGTGCTCTGG
ATGACACCTCGCACTCGGTGCACGTGTACAGCATCAACGGCTGCAGTCTG
GGCTCCAAATACGTTTCTGGCAGGGTGACGGGATTGGCTAGTGCCTCCGA
CTACCTGGTGGTGGCCGACGATGCCGGCGATATCACCATGAGCAGACTTC
TTCTTTTCCAGCTTGAAGCCCGTTTTCGACATTCCCCTGCACGTGCCCAT
CCAGACGGTGGTGGTCACTCCGGGCAACACCCACATGTCGACTGATAACT

BS12693.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32252-PA 270 CG32252-RA 1..270 286..17 1350 100 Minus
CG1332-PA 2637 CG1332-RA 2293..2465 26..198 865 100 Plus
CG1332-PA 2637 CG1332-RA 2471..2546 211..286 380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RF 9817 CG43367-RF 8062..8315 26..286 1145 96.2 Plus
CG43367-RE 10170 CG43367-RE 8415..8668 26..286 1145 96.2 Plus
CG43367-RD 9842 CG43367-RD 8087..8340 26..286 1145 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4222180..4222362 16..198 915 100 Plus
3L 28110227 3L 4222412..4222501 197..286 450 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:50:05 has no hits.

BS12693.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:30 Download gff for BS12693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32252-PA 1..270 17..286 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:02 Download gff for BS12693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8081..8342 18..289 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:04 Download gff for BS12693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8081..8342 18..289 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:04 Download gff for BS12693.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4222180..4222360 16..196 100 <- Plus
3L 4222412..4222503 197..289 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:02 Download gff for BS12693.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4222180..4222360 16..196 100 <- Plus
arm_3L 4222412..4222503 197..289 98   Plus

BS12693.5prime Sequence

300 bp (300 high quality bases) assembled on 2006-10-13

> BS12693.5prime
GAAGTTATCAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCT
GGATGGGCACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAG
AAGAAGTCTGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGT
AGTCGGAGGCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAG
CCCAGACTGCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTC
ATCCAGAGCACTGAATGCAATGTGACCTGTGTGTAAAAGCTTTCTAGACC

BS12693.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32252-PA 270 CG32252-RA 1..270 17..286 1350 100 Plus
CG1332-PA 2637 CG1332-RA 2293..2465 277..105 865 100 Minus
CG1332-PA 2637 CG1332-RA 2471..2546 92..17 380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RF 9817 CG43367-RF 8062..8315 277..17 1145 96.2 Minus
CG43367-RE 10170 CG43367-RE 8415..8668 277..17 1145 96.2 Minus
CG43367-RD 9842 CG43367-RD 8087..8340 277..17 1145 96.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4222180..4222362 287..105 915 100 Minus
3L 28110227 3L 4222412..4222501 106..17 450 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:36:39 has no hits.

BS12693.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:31 Download gff for BS12693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32252-PA 1..270 17..286 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:27 Download gff for BS12693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8081..8342 14..285 94   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:59 Download gff for BS12693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8081..8342 14..285 94   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:59 Download gff for BS12693.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4222180..4222360 107..287 100 <- Minus
3L 4222412..4222503 14..106 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:27 Download gff for BS12693.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4222180..4222360 107..287 100 <- Minus
arm_3L 4222412..4222503 14..106 98   Minus

BS12693.complete Sequence

302 bp assembled on 2006-11-01

GenBank Submission: FJ637273

> BS12693.complete
GAAGTTATCAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCT
GGATGGGCACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAG
AAGAAGTCTGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGT
AGTCGGAGGCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAG
CCCAGACTGCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTC
ATCCAGAGCACTGAATGCAATGTGACCTGTGTGTAAAAGCTTTCTAGACC
AT

BS12693.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:15:25 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RF 9817 CG43367-RF 8062..8315 277..17 1120 96.2 Minus
CG43367-RE 10170 CG43367-RE 8415..8668 277..17 1120 96.2 Minus
CG43367-RD 9842 CG43367-RD 8087..8340 277..17 1120 96.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4222180..4222362 287..105 915 100 Minus
3L 28110227 3L 4222412..4222501 106..17 450 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:15:24 has no hits.

BS12693.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:41 Download gff for BS12693.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 1..270 17..286 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:52 Download gff for BS12693.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 232..504 14..287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:02 Download gff for BS12693.complete
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8082..8340 17..284 94   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:42 Download gff for BS12693.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 232..504 14..287 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:03 Download gff for BS12693.complete
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8082..8340 17..284 94   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:03 Download gff for BS12693.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4222183..4222360 107..284 100 <- Minus
3L 4222412..4222501 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:02 Download gff for BS12693.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4222183..4222360 107..284 100 <- Minus
arm_3L 4222412..4222501 17..106 100   Minus

BS12693.pep Sequence

Translation from 16 to 285

> BS12693.pep
MWVLPGVTTTVWMGTCRGMSKTGFKLEKKKSAHGDIAGIVGHHQVVGGTS
QSRHPARNVFGAQTAAVDAVHVHRVRGVIQSTECNVTCV*
Sequence BS12693.pep has no blast hits.