Clone Sequence Records
BS12693.3prime Sequence
300 bp (300 high quality bases) assembled on 2006-10-13
> BS12693.3prime
ATGGTCTAGAAAGCTTTTACACACAGGTCACATTGCATTCAGTGCTCTGG
ATGACACCTCGCACTCGGTGCACGTGTACAGCATCAACGGCTGCAGTCTG
GGCTCCAAATACGTTTCTGGCAGGGTGACGGGATTGGCTAGTGCCTCCGA
CTACCTGGTGGTGGCCGACGATGCCGGCGATATCACCATGAGCAGACTTC
TTCTTTTCCAGCTTGAAGCCCGTTTTCGACATTCCCCTGCACGTGCCCAT
CCAGACGGTGGTGGTCACTCCGGGCAACACCCACATGTCGACTGATAACT
BS12693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32252-PA | 270 | CG32252-RA | 1..270 | 286..17 | 1350 | 100 | Minus |
CG1332-PA | 2637 | CG1332-RA | 2293..2465 | 26..198 | 865 | 100 | Plus |
CG1332-PA | 2637 | CG1332-RA | 2471..2546 | 211..286 | 380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-RF | 9817 | CG43367-RF | 8062..8315 | 26..286 | 1145 | 96.2 | Plus |
CG43367-RE | 10170 | CG43367-RE | 8415..8668 | 26..286 | 1145 | 96.2 | Plus |
CG43367-RD | 9842 | CG43367-RD | 8087..8340 | 26..286 | 1145 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4222180..4222362 | 16..198 | 915 | 100 | Plus |
3L | 28110227 | 3L | 4222412..4222501 | 197..286 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:50:05 has no hits.
BS12693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:30 Download gff for
BS12693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-PA | 1..270 | 17..286 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:02 Download gff for
BS12693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8081..8342 | 18..289 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:04 Download gff for
BS12693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8081..8342 | 18..289 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:04 Download gff for
BS12693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4222180..4222360 | 16..196 | 100 | <- | Plus |
3L | 4222412..4222503 | 197..289 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:02 Download gff for
BS12693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4222180..4222360 | 16..196 | 100 | <- | Plus |
arm_3L | 4222412..4222503 | 197..289 | 98 | | Plus |
BS12693.5prime Sequence
300 bp (300 high quality bases) assembled on 2006-10-13
> BS12693.5prime
GAAGTTATCAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCT
GGATGGGCACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAG
AAGAAGTCTGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGT
AGTCGGAGGCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAG
CCCAGACTGCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTC
ATCCAGAGCACTGAATGCAATGTGACCTGTGTGTAAAAGCTTTCTAGACC
BS12693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32252-PA | 270 | CG32252-RA | 1..270 | 17..286 | 1350 | 100 | Plus |
CG1332-PA | 2637 | CG1332-RA | 2293..2465 | 277..105 | 865 | 100 | Minus |
CG1332-PA | 2637 | CG1332-RA | 2471..2546 | 92..17 | 380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-RF | 9817 | CG43367-RF | 8062..8315 | 277..17 | 1145 | 96.2 | Minus |
CG43367-RE | 10170 | CG43367-RE | 8415..8668 | 277..17 | 1145 | 96.2 | Minus |
CG43367-RD | 9842 | CG43367-RD | 8087..8340 | 277..17 | 1145 | 96.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4222180..4222362 | 287..105 | 915 | 100 | Minus |
3L | 28110227 | 3L | 4222412..4222501 | 106..17 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:36:39 has no hits.
BS12693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:31 Download gff for
BS12693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-PA | 1..270 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:27 Download gff for
BS12693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8081..8342 | 14..285 | 94 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:59 Download gff for
BS12693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8081..8342 | 14..285 | 94 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:59 Download gff for
BS12693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4222180..4222360 | 107..287 | 100 | <- | Minus |
3L | 4222412..4222503 | 14..106 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:27 Download gff for
BS12693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4222180..4222360 | 107..287 | 100 | <- | Minus |
arm_3L | 4222412..4222503 | 14..106 | 98 | | Minus |
BS12693.complete Sequence
302 bp assembled on 2006-11-01
GenBank Submission: FJ637273
> BS12693.complete
GAAGTTATCAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCT
GGATGGGCACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAG
AAGAAGTCTGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGT
AGTCGGAGGCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAG
CCCAGACTGCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTC
ATCCAGAGCACTGAATGCAATGTGACCTGTGTGTAAAAGCTTTCTAGACC
AT
BS12693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:15:25 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-RF | 9817 | CG43367-RF | 8062..8315 | 277..17 | 1120 | 96.2 | Minus |
CG43367-RE | 10170 | CG43367-RE | 8415..8668 | 277..17 | 1120 | 96.2 | Minus |
CG43367-RD | 9842 | CG43367-RD | 8087..8340 | 277..17 | 1120 | 96.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4222180..4222362 | 287..105 | 915 | 100 | Minus |
3L | 28110227 | 3L | 4222412..4222501 | 106..17 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:15:24 has no hits.
BS12693.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:41 Download gff for
BS12693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-RA | 1..270 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:52 Download gff for
BS12693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-RA | 232..504 | 14..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:02 Download gff for
BS12693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8082..8340 | 17..284 | 94 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:42 Download gff for
BS12693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-RA | 232..504 | 14..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:03 Download gff for
BS12693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8082..8340 | 17..284 | 94 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:03 Download gff for
BS12693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4222183..4222360 | 107..284 | 100 | <- | Minus |
3L | 4222412..4222501 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:02 Download gff for
BS12693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4222183..4222360 | 107..284 | 100 | <- | Minus |
arm_3L | 4222412..4222501 | 17..106 | 100 | | Minus |
BS12693.pep Sequence
Translation from 16 to 285
> BS12693.pep
MWVLPGVTTTVWMGTCRGMSKTGFKLEKKKSAHGDIAGIVGHHQVVGGTS
QSRHPARNVFGAQTAAVDAVHVHRVRGVIQSTECNVTCV*
Sequence BS12693.pep has no blast hits.