Clone BS12696 Report

Search the DGRC for BS12696

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:96
Vector:pDNR-Dual
Protein status:BS12696.pep: Imported from assembly
Sequenced Size:276

Clone Sequence Records

BS12696.3prime Sequence

274 bp (274 high quality bases) assembled on 2006-10-13

> BS12696.3prime
ATGGTCTAGAAAGGCTTTTAATATGAGAGTGTAGTGTTTTCTCTTTTCGT
GGTCATTACCGAACCTTCTTCTGACATCGTGCCATCTGTTATTTGTTGTT
CATTTTTGTCAGTATAAACAATAAGGTATTCGTCTTCATCAGCTAAAGCA
TTACATAGAAGTATGCATTCCTTTTTAGTTTGAAAACGATTCGGGTTTCC
GCCACAACCACCGTAGATAAATTCTACGCATACATTGTTATCCATGTCAT
AGGCAAACATGTCGACTGATAACT

BS12696.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17380-PA 243 CG17380-RA 1..243 260..18 1215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17380-RB 1068 CG17380-RB 163..405 260..18 1215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23403271..23403513 18..260 1215 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:41:00 has no hits.

BS12696.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:32 Download gff for BS12696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17380-PA 1..243 18..260 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:18:05 Download gff for BS12696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 115..370 7..263 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:13 Download gff for BS12696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 160..415 7..263 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:13 Download gff for BS12696.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23403261..23403516 7..263 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:18:05 Download gff for BS12696.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19228983..19229238 7..263 97   Plus

BS12696.complete Sequence

276 bp assembled on 2009-02-12

> BS12696.complete
GAAGTTATCAGTCGACATGTTTGCCTATGACATGGATAACAATGTATGCG
TAGAATTTATCTACGGTGGTTGTGGCGGAAACCCGAATCGTTTTCAAACT
AAAAAGGAATGCATACTTCTATGTAATGCTTTAGCTGATGAAGACGAATA
CCTTATTGTTTATACTGACAAAAATGAACAACAAATAACAGATGGCACGA
TGTCAGAAGAAGGTTCGGTAATGACCACGAAAAGAGAAAACACTACACTC
TCATATTAAAAGCCTTTCTAGACCAT

BS12696.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17380-RB 360 CG17380-PB 118..360 17..259 1215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17380-RB 1068 CG17380-RB 163..405 17..259 1215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23403271..23403513 259..17 1215 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:01:52 has no hits.

BS12696.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:35 Download gff for BS12696.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 124..358 23..257 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:33 Download gff for BS12696.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 124..358 23..257 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:47 Download gff for BS12696.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 169..403 23..257 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:47 Download gff for BS12696.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23403273..23403507 23..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:33 Download gff for BS12696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19228995..19229229 23..257 100   Minus

BS12696.pep Sequence

Translation from 16 to 258

> BS12696.pep
MFAYDMDNNVCVEFIYGGCGGNPNRFQTKKECILLCNALADEDEYLIVYT
DKNEQQITDGTMSEEGSVMTTKRENTTLSY*

BS12696.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17380-PB 119 CG17380-PB 40..119 1..80 431 100 Plus