Clone Sequence Records
BS12696.3prime Sequence
274 bp (274 high quality bases) assembled on 2006-10-13
> BS12696.3prime
ATGGTCTAGAAAGGCTTTTAATATGAGAGTGTAGTGTTTTCTCTTTTCGT
GGTCATTACCGAACCTTCTTCTGACATCGTGCCATCTGTTATTTGTTGTT
CATTTTTGTCAGTATAAACAATAAGGTATTCGTCTTCATCAGCTAAAGCA
TTACATAGAAGTATGCATTCCTTTTTAGTTTGAAAACGATTCGGGTTTCC
GCCACAACCACCGTAGATAAATTCTACGCATACATTGTTATCCATGTCAT
AGGCAAACATGTCGACTGATAACT
BS12696.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17380-PA | 243 | CG17380-RA | 1..243 | 260..18 | 1215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17380-RB | 1068 | CG17380-RB | 163..405 | 260..18 | 1215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23403271..23403513 | 18..260 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:41:00 has no hits.
BS12696.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:32 Download gff for
BS12696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-PA | 1..243 | 18..260 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:18:05 Download gff for
BS12696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 115..370 | 7..263 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:13 Download gff for
BS12696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 160..415 | 7..263 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:13 Download gff for
BS12696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23403261..23403516 | 7..263 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:18:05 Download gff for
BS12696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19228983..19229238 | 7..263 | 97 | | Plus |
BS12696.complete Sequence
276 bp assembled on 2009-02-12
> BS12696.complete
GAAGTTATCAGTCGACATGTTTGCCTATGACATGGATAACAATGTATGCG
TAGAATTTATCTACGGTGGTTGTGGCGGAAACCCGAATCGTTTTCAAACT
AAAAAGGAATGCATACTTCTATGTAATGCTTTAGCTGATGAAGACGAATA
CCTTATTGTTTATACTGACAAAAATGAACAACAAATAACAGATGGCACGA
TGTCAGAAGAAGGTTCGGTAATGACCACGAAAAGAGAAAACACTACACTC
TCATATTAAAAGCCTTTCTAGACCAT
BS12696.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17380-RB | 360 | CG17380-PB | 118..360 | 17..259 | 1215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17380-RB | 1068 | CG17380-RB | 163..405 | 17..259 | 1215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23403271..23403513 | 259..17 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:01:52 has no hits.
BS12696.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:35 Download gff for
BS12696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 124..358 | 23..257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:33 Download gff for
BS12696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 124..358 | 23..257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:47 Download gff for
BS12696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 169..403 | 23..257 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:47 Download gff for
BS12696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23403273..23403507 | 23..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:33 Download gff for
BS12696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19228995..19229229 | 23..257 | 100 | | Minus |
BS12696.pep Sequence
Translation from 16 to 258
> BS12696.pep
MFAYDMDNNVCVEFIYGGCGGNPNRFQTKKECILLCNALADEDEYLIVYT
DKNEQQITDGTMSEEGSVMTTKRENTTLSY*
BS12696.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17380-PB | 119 | CG17380-PB | 40..119 | 1..80 | 431 | 100 | Plus |