Clone Sequence Records
BS12703.3prime Sequence
756 bp (733 high quality bases) assembled on 2006-10-13
> BS12703.3prime
ATGGTCTAGAAAGCTTTTAATAGGTTCCGGCATTCATGGCCTTCACATCC
AGTTTTTGCTGATAGGCCAGTCTCTGAAGAATCGTGGGATGAGTGTGATG
CCATCGAGCATAGCATTGGTCGTAGACCGGAAAACTCATATGATCCGCAT
AAATCTTGACCAGCGCCATCCTCAGTTGGATGGAGTATCCCATGCGATGG
GCAAATTTATCGGCGGCATACTCAAAGCGACGCAGATTCCACAGCATCAA
GACATTGGCCAACGTGAGATAAGGAGTCAGGGCAAATTTCAGAACAATGA
TGAAACCCACTATGATGGGCATAACGCCAGGCTCGAAACCCACTGCCATG
TATAGCTGGGGAGAGTGAAAGAACAATCCGAACAGTCCCATGGTGATAAA
GAAGTGAATCTTCATGATGATCGTAGCCTTGTAGAAATGTCCGTGCTTCC
AGTGACCCAACTCGTGACACACCACGCCCGCCACCTGGATGTTGGTCAGA
CCTCTGCCCACCTCATAGGGATGGATCTCATTGGGTTCCTTGCCCTTGTT
CAATAGCAAGGTATCAAAAATTACAATTCTTTTCAGGCAGCAGCTCCCGT
AAAAGTAGGCATTACTATACTGCATTGTCCGGGTCTTTATGATAAATACC
CTCTTCATGGGGAAGCCAACCACATCGCAAACACGCTTCACCTCCATATA
GAGGGCAGTGCCCTCTGGTAAAACCACCTGTCGTCCCATGCACGGAATGC
AGCAGT
BS12703.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9002-PA | 1371 | CG9002-RA | 632..1371 | 756..17 | 3475 | 98.7 | Minus |
| CG9002-PB | 1371 | CG9002-RB | 632..1371 | 756..17 | 3475 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 656..1395 | 756..17 | 3565 | 98.8 | Minus |
| ste24c-RD | 1716 | CG9002-RD | 656..1395 | 756..17 | 3565 | 98.8 | Minus |
| ste24c-RA | 2228 | CG9002-RA | 656..1395 | 756..17 | 3565 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16997141..16997880 | 17..756 | 3565 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:36:50 has no hits.
BS12703.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:33 Download gff for
BS12703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-PB | 632..1371 | 17..756 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:29 Download gff for
BS12703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 656..1398 | 12..756 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:32 Download gff for
BS12703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 656..1398 | 12..756 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:32 Download gff for
BS12703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16997138..16997880 | 12..756 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:29 Download gff for
BS12703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12884643..12885385 | 12..756 | 98 | | Plus |
BS12703.5prime Sequence
853 bp (748 high quality bases) assembled on 2006-10-13
> BS12703.5prime
GAAGTTATCAGTCGACATGGCATTCTACGATACTTGGCCGAAAGTAGATC
CAATCATAGTGCTGGTGGTGTTATGTCTGATCGTGTTAGTTGACCGGATA
TGGGAGATGATACTCACCAAGAGGCAGCAATTGGTGTGCCTGAATGCGAT
TATGGTGCCGGAGGAGTTGAGAGGAATCATTCCGCCGGAGATTTACCATC
GGGCCCGCATCTACGAGCTGCATAAAACGGAGCTACAGATATGGAAGTAC
CTCATCGACTTGATTATTACGCTCTGTGAGCTGATATTGGGCTTCTATCC
ATTCCTCTGGAGCTTGTCTGCGAAGACTCTACAGAAAATAACCTCCCAAG
AGATCTGGATAACCTTGATCTTTGTTTTCTACCTGACCATTTACATTTGT
ATAAGGTTCCTGCCGGTTCTGATCTATGACAAGTGCCTGCTGGAGTTGCG
ATATGGGATGTCGGGCAAGTTTCCTTGGTACCTCTACTGCTGCATTGGAG
CAATGTCCATTCTCCTAAGCCAGCTCGTCCTGTTCCCGTTGGCGGCGGCC
ATTGTGTTCAGCGTAAAGTTCATTGGGTACTACTTCTTCCTTTGGTTCTG
GCTGTTCTGGGCTACGTTCACCCTGTTGCTGGTATTTTTTTTGCCCTACT
GCTGCATTCCGTGCATTGGACGACAGGTGGTTTTACCAGAGGGCACTGCC
CTCTATATGGAGGTGAAGCGTGTTTGCGATGTGGTTGGCTTCCCCATGAA
GAGGGTATTTATCATAAAGACCCGGACAATGCAGTATAGTAATGCCTACT
TTTACGGGAGCTGCTTGCTGAAAAGAATTGTATTTTTTGATACCTTGCTA
TTG
BS12703.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9002-PA | 1371 | CG9002-RA | 1..837 | 17..853 | 4085 | 99.5 | Plus |
| CG9002-PB | 1371 | CG9002-RB | 1..837 | 17..853 | 4085 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 25..861 | 17..853 | 4125 | 99.5 | Plus |
| ste24c-RD | 1716 | CG9002-RD | 25..861 | 17..853 | 4125 | 99.5 | Plus |
| ste24c-RA | 2228 | CG9002-RA | 25..861 | 17..853 | 4125 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16997675..16998403 | 853..125 | 3585 | 99.5 | Minus |
| 2R | 25286936 | 2R | 16998460..16998570 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:12:22 has no hits.
BS12703.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:33 Download gff for
BS12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-PB | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:45 Download gff for
BS12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..861 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:35 Download gff for
BS12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..861 | 17..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:35 Download gff for
BS12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16997675..16998400 | 128..853 | 99 | <- | Minus |
| 2R | 16998460..16998570 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:45 Download gff for
BS12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12885180..12885905 | 128..853 | 99 | <- | Minus |
| arm_2R | 12885965..12886075 | 17..127 | 100 | | Minus |
BS12703.complete Sequence
1403 bp assembled on 2006-11-01
GenBank Submission: FJ637274
> BS12703.complete
GAAGTTATCAGTCGACATGGCATTCTACGATACTTGGCCGAAAGTAGATC
CAATCATAGTGCTGGTGGTGTTATGTCTGATCGTGTTAGTTGACCGGATA
TGGGAGATGATACTCACCAAGAGGCAGCAATTGGTGTGCCTGAATGCGAT
TATGGTGCCGGAGGAGTTGAGAGGAATCATTCCGCCGGAGATTTACCATC
GGGCCCGCATCTACGAGCTGCATAAAACGGAGCTACAGATATGGAAGTAC
CTCATCGACTTGATTATTACGCTCTGTGAGCTGATATTGGGCTTCTATCC
ATTCCTCTGGAGCTTGTCTGCGAAGACTCTACAGAAAATAACCTCCCAAG
AGATCTGGATAACCTTGATCTTTGTTTTCTACCTGACCATTTACATTTGT
ATAAGGTTCCTGCCGGTTCTGATCTATGACAAGTGCCTGCTGGAGTTGCG
ATATGGGATGTCGGGCAAGTTTCCTTGGTACCTCTACTGCTGCATTGGAG
CAATGTCCATTCTCCTAAGCCAGCTCGTCCTGTTCCCGTTGGCGGCGGCC
ATTGTGTTCAGCGTAAAGTTCATTGGGTACTACTTCTTCCTTTGGTTCTG
GCTGTTCTGGGCTACGTTCACCCTGTTGCTGGTATTTTTTTTGCCCTACT
GCTGCATTCCGTGCATTGGACGACAGGTGGTTTTACCAGAGGGCACTGCC
CTCTATATGGAGGTGAAGCGTGTTTGCGATGTGGTTGGCTTCCCCATGAA
GAGGGTATTTATCATAAAGACCCGGACAATGCAGTATAGTAATGCCTACT
TTTACGGGAGCTGCTGCCTGAAAAGAATTGTAATTTTTGATACCTTGCTA
TTGAACAAGGGCAAGGAACCCAATGAGATCCATCCCTATGAGGTGGGCAG
AGGTCTGACCAACATCCAGGTGGCGGGCGTGGTGTGTCACGAGTTGGGTC
ACTGGAAGCACGGACATTTCTACAAGGCTACGATCATCATGAAGATTCAC
TTCTTTATCACCATGGGACTGTTCGGATTGTTCTTTCACTCTCCCCAGCT
ATACATGGCAGTGGGTTTCGAGCCTGGCGTTATGCCCATCATAGTGGGTT
TCATCATTGTTCTGAAATTTGCCCTGACTCCTTATCTCACGTTGGCCAAT
GTCTTGATGCTGTGGAATCTGCGTCGCTTTGAGTATGCCGCCGATAAATT
TGCCCATCGCATGGGATACTCCATCCAACTGAGGATGGCGCTGGTCAAGA
TTTATGCGGATCATATGAGTTTTCCGGTCTACGACCAATGCTATGCTCGA
TGGCATCACACTCATCCCACGATTCTTCAGAGACTGGCCTATCAGCAAAA
ACTGGATGTGAAGGCCATGAATGCCGGAACCTATTAAAAGCTTTCTAGAC
CAT
BS12703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 1371 | CG9002-PC | 1..1371 | 17..1387 | 6720 | 99.3 | Plus |
| ste24c-RD | 1371 | CG9002-PD | 1..1371 | 17..1387 | 6720 | 99.3 | Plus |
| ste24c-RA | 1371 | CG9002-PA | 1..1371 | 17..1387 | 6720 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 25..1395 | 17..1387 | 6720 | 99.3 | Plus |
| ste24c-RD | 1716 | CG9002-RD | 25..1395 | 17..1387 | 6720 | 99.3 | Plus |
| ste24c-RA | 2228 | CG9002-RA | 25..1395 | 17..1387 | 6720 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16997141..16998403 | 1387..125 | 6180 | 99.3 | Minus |
| 2R | 25286936 | 2R | 16998460..16998570 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:48:54 has no hits.
BS12703.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:31 Download gff for
BS12703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-RB | 1..1371 | 17..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:51 Download gff for
BS12703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-RB | 25..1395 | 17..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:23 Download gff for
BS12703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..1393 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:31 Download gff for
BS12703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-RB | 25..1395 | 17..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:09 Download gff for
BS12703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..1393 | 17..1385 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:09 Download gff for
BS12703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16997143..16998400 | 128..1385 | 99 | <- | Minus |
| 2R | 16998460..16998570 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:23 Download gff for
BS12703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12884648..12885905 | 128..1385 | 99 | <- | Minus |
| arm_2R | 12885965..12886075 | 17..127 | 100 | | Minus |
BS12703.pep Sequence
Translation from 16 to 1386
> BS12703.pep
MAFYDTWPKVDPIIVLVVLCLIVLVDRIWEMILTKRQQLVCLNAIMVPEE
LRGIIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPFLWSL
SAKTLQKITSQEIWITLIFVFYLTIYICIRFLPVLIYDKCLLELRYGMSG
KFPWYLYCCIGAMSILLSQLVLFPLAAAIVFSVKFIGYYFFLWFWLFWAT
FTLLLVFFLPYCCIPCIGRQVVLPEGTALYMEVKRVCDVVGFPMKRVFII
KTRTMQYSNAYFYGSCCLKRIVIFDTLLLNKGKEPNEIHPYEVGRGLTNI
QVAGVVCHELGHWKHGHFYKATIIMKIHFFITMGLFGLFFHSPQLYMAVG
FEPGVMPIIVGFIIVLKFALTPYLTLANVLMLWNLRRFEYAADKFAHRMG
YSIQLRMALVKIYADHMSFPVYDQCYARWHHTHPTILQRLAYQQKLDVKA
MNAGTY*
BS12703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-PC | 456 | CG9002-PC | 1..456 | 1..456 | 2452 | 100 | Plus |
| ste24c-PD | 456 | CG9002-PD | 1..456 | 1..456 | 2452 | 100 | Plus |
| ste24c-PA | 456 | CG9002-PA | 1..456 | 1..456 | 2452 | 100 | Plus |
| ste24b-PA | 447 | CG9001-PA | 8..440 | 11..441 | 840 | 38.6 | Plus |
| ste24a-PA | 451 | CG9000-PA | 4..438 | 10..440 | 763 | 37.1 | Plus |
