Clone Sequence Records
BS12705.3prime Sequence
525 bp (525 high quality bases) assembled on 2006-10-13
> BS12705.3prime
ATGGTCTAGAAAGCTTCTACATTATCTGTTTTAAGCGCGCTTGTTTCAGA
AAATTCCTACACGCTATGCTGCACTGCCGGTAAATTTCTTCAAATGATGC
TTCACCAATGTCATAATAGGGATCCTCAATGATGCGTTCATCTGGTTTCA
GGCCAAAATTCCCGAGAATCAGCAACTTGGCAGTGGTGCCTTTGGGAGCC
ATGCGCCTCAGGGCGGCCAGGTTGCTCAGATCCATGGCGAAGATGTAGTC
GAATTCGAGGAAGTCCTCCGGAGCTAGAACTCTCGCCTTGCCATTGTATT
CGATGTTGTGCCTGGCCAGGACATTCAGTGCACGCTCATCTGGTTGGTGG
CCGGAATGCCAATCCTCGATCCCGGCGCTCTCCACATGCCACTCCCCCTG
TAGTCCCGCCCTTGCGACCAAGTCACGCATCACAGCCTCGGCAATTGGGG
AGCGGCATAGGTTGCCCACACACACCATTAGCACACTGCTCTTCTGCGAT
CTTTTGCCCATGTCGACTGATAACT
BS12705.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33747-PB | 495 | primo-2-RB | 1..495 | 511..17 | 2475 | 100 | Minus |
CG33747-PC | 495 | primo-2-RC | 1..495 | 511..17 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-1-RA | 1336 | CG33748-RA | 146..641 | 511..16 | 2480 | 100 | Minus |
primo-2-RC | 1336 | CG33747-RC | 146..641 | 511..16 | 2480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13711218..13711572 | 112..466 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 13710931..13711027 | 16..112 | 485 | 100 | Plus |
3R | 32079331 | 3R | 13711644..13711690 | 465..511 | 235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 18:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3844..3922 | 24..102 | 107 | 59.5 | Plus |
BS12705.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:35 Download gff for
BS12705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33747-PC | 1..495 | 17..511 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:02 Download gff for
BS12705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-1-RA | 146..641 | 16..511 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:34 Download gff for
BS12705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 146..641 | 16..511 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:34 Download gff for
BS12705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13710931..13711027 | 16..112 | 100 | <- | Plus |
3R | 13711219..13711571 | 113..465 | 100 | <- | Plus |
3R | 13711645..13711690 | 466..511 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:02 Download gff for
BS12705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9536653..9536749 | 16..112 | 100 | <- | Plus |
arm_3R | 9536941..9537293 | 113..465 | 100 | <- | Plus |
arm_3R | 9537367..9537412 | 466..511 | 100 | | Plus |
BS12705.5prime Sequence
525 bp (525 high quality bases) assembled on 2006-10-13
> BS12705.5prime
GAAGTTATCAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAA
TGGTGTGTGTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATG
CGTGACTTGGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAG
CGCCGGGATCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCAC
TGAATGTCCTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTT
CTAGCTCCGGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCT
GAGCAACCTGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCA
AGTTGCTGATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATT
GAGGATCCCTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCG
GCAGTGCAGCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAAC
AGATAATGTAGAAGCTTTCTAGACC
BS12705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33747-PB | 495 | primo-2-RB | 1..495 | 17..511 | 2475 | 100 | Plus |
CG33747-PC | 495 | primo-2-RC | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-1-RA | 1336 | CG33748-RA | 146..641 | 17..512 | 2480 | 100 | Plus |
primo-2-RC | 1336 | CG33747-RC | 146..641 | 17..512 | 2480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13711218..13711572 | 416..62 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 13710931..13711027 | 512..416 | 485 | 100 | Minus |
3R | 32079331 | 3R | 13711644..13711690 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 17:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3844..3922 | 504..426 | 107 | 59.5 | Minus |
BS12705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:35 Download gff for
BS12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33747-PC | 1..495 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:48 Download gff for
BS12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-1-RA | 146..641 | 17..512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:45 Download gff for
BS12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 146..641 | 17..512 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:45 Download gff for
BS12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13710931..13711027 | 416..512 | 100 | <- | Minus |
3R | 13711219..13711571 | 63..415 | 100 | <- | Minus |
3R | 13711645..13711690 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:48 Download gff for
BS12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9536653..9536749 | 416..512 | 100 | <- | Minus |
arm_3R | 9536941..9537293 | 63..415 | 100 | <- | Minus |
arm_3R | 9537367..9537412 | 17..62 | 100 | | Minus |
BS12705.complete Sequence
527 bp assembled on 2006-11-01
GenBank Submission: FJ637275
> BS12705.complete
GAAGTTATCAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAA
TGGTGTGTGTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATG
CGTGACTTGGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAG
CGCCGGGATCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCAC
TGAATGTCCTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTT
CTAGCTCCGGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCT
GAGCAACCTGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCA
AGTTGCTGATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATT
GAGGATCCCTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCG
GCAGTGCAGCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAAC
AGATAATGTAGAAGCTTTCTAGACCAT
BS12705.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-2-RC | 495 | CG33747-PC | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-1-RA | 1336 | CG33748-RA | 146..641 | 17..512 | 2480 | 100 | Plus |
primo-2-RC | 1336 | CG33747-RC | 146..641 | 17..512 | 2480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13711218..13711572 | 416..62 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 13710931..13711027 | 512..416 | 485 | 100 | Minus |
3R | 32079331 | 3R | 13711644..13711690 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3844..3922 | 504..426 | 107 | 59.5 | Minus |
BS12705.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:18 Download gff for
BS12705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 1..495 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:35 Download gff for
BS12705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 146..641 | 17..512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:38 Download gff for
BS12705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-1-RA | 146..640 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:19 Download gff for
BS12705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RB | 141..636 | 17..512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:52 Download gff for
BS12705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 146..640 | 17..511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:52 Download gff for
BS12705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13710932..13711027 | 416..511 | 100 | <- | Minus |
3R | 13711219..13711571 | 63..415 | 100 | <- | Minus |
3R | 13711645..13711690 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:38 Download gff for
BS12705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9536654..9536749 | 416..511 | 100 | <- | Minus |
arm_3R | 9536941..9537293 | 63..415 | 100 | <- | Minus |
arm_3R | 9537367..9537412 | 17..62 | 100 | | Minus |
BS12705.pep Sequence
Translation from 16 to 510
> BS12705.pep
MGKRSQKSSVLMVCVGNLCRSPIAEAVMRDLVARAGLQGEWHVESAGIED
WHSGHQPDERALNVLARHNIEYNGKARVLAPEDFLEFDYIFAMDLSNLAA
LRRMAPKGTTAKLLILGNFGLKPDERIIEDPYYDIGEASFEEIYRQCSIA
CRNFLKQARLKQIM*
BS12705.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-2-PC | 164 | CG33747-PC | 1..164 | 1..164 | 853 | 100 | Plus |
primo-1-PB | 155 | CG33748-PB | 5..151 | 10..157 | 397 | 50 | Plus |
primo-1-PA | 155 | CG33748-PA | 5..151 | 10..157 | 397 | 50 | Plus |
CG31469-PA | 164 | CG31469-PA | 3..151 | 10..156 | 324 | 42.7 | Plus |
CG14297-PA | 250 | CG14297-PA | 6..152 | 10..155 | 209 | 31.5 | Plus |