Clone BS12705 Report

Search the DGRC for BS12705

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptprimo-2-RC
Protein status:BS12705.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12705.3prime Sequence

525 bp (525 high quality bases) assembled on 2006-10-13

> BS12705.3prime
ATGGTCTAGAAAGCTTCTACATTATCTGTTTTAAGCGCGCTTGTTTCAGA
AAATTCCTACACGCTATGCTGCACTGCCGGTAAATTTCTTCAAATGATGC
TTCACCAATGTCATAATAGGGATCCTCAATGATGCGTTCATCTGGTTTCA
GGCCAAAATTCCCGAGAATCAGCAACTTGGCAGTGGTGCCTTTGGGAGCC
ATGCGCCTCAGGGCGGCCAGGTTGCTCAGATCCATGGCGAAGATGTAGTC
GAATTCGAGGAAGTCCTCCGGAGCTAGAACTCTCGCCTTGCCATTGTATT
CGATGTTGTGCCTGGCCAGGACATTCAGTGCACGCTCATCTGGTTGGTGG
CCGGAATGCCAATCCTCGATCCCGGCGCTCTCCACATGCCACTCCCCCTG
TAGTCCCGCCCTTGCGACCAAGTCACGCATCACAGCCTCGGCAATTGGGG
AGCGGCATAGGTTGCCCACACACACCATTAGCACACTGCTCTTCTGCGAT
CTTTTGCCCATGTCGACTGATAACT

BS12705.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33747-PB 495 primo-2-RB 1..495 511..17 2475 100 Minus
CG33747-PC 495 primo-2-RC 1..495 511..17 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RA 1336 CG33748-RA 146..641 511..16 2480 100 Minus
primo-2-RC 1336 CG33747-RC 146..641 511..16 2480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13711218..13711572 112..466 1775 100 Plus
3R 32079331 3R 13710931..13711027 16..112 485 100 Plus
3R 32079331 3R 13711644..13711690 465..511 235 100 Plus
Blast to na_te.dros performed 2015-02-02 18:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3844..3922 24..102 107 59.5 Plus

BS12705.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:35 Download gff for BS12705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33747-PC 1..495 17..511 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:02 Download gff for BS12705.3prime
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 146..641 16..511 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:34 Download gff for BS12705.3prime
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..641 16..511 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:34 Download gff for BS12705.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13710931..13711027 16..112 100 <- Plus
3R 13711219..13711571 113..465 100 <- Plus
3R 13711645..13711690 466..511 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:02 Download gff for BS12705.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9536653..9536749 16..112 100 <- Plus
arm_3R 9536941..9537293 113..465 100 <- Plus
arm_3R 9537367..9537412 466..511 100   Plus

BS12705.5prime Sequence

525 bp (525 high quality bases) assembled on 2006-10-13

> BS12705.5prime
GAAGTTATCAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAA
TGGTGTGTGTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATG
CGTGACTTGGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAG
CGCCGGGATCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCAC
TGAATGTCCTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTT
CTAGCTCCGGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCT
GAGCAACCTGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCA
AGTTGCTGATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATT
GAGGATCCCTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCG
GCAGTGCAGCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAAC
AGATAATGTAGAAGCTTTCTAGACC

BS12705.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33747-PB 495 primo-2-RB 1..495 17..511 2475 100 Plus
CG33747-PC 495 primo-2-RC 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RA 1336 CG33748-RA 146..641 17..512 2480 100 Plus
primo-2-RC 1336 CG33747-RC 146..641 17..512 2480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13711218..13711572 416..62 1775 100 Minus
3R 32079331 3R 13710931..13711027 512..416 485 100 Minus
3R 32079331 3R 13711644..13711690 63..17 235 100 Minus
Blast to na_te.dros performed 2015-02-12 17:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3844..3922 504..426 107 59.5 Minus

BS12705.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:35 Download gff for BS12705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33747-PC 1..495 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:48 Download gff for BS12705.5prime
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 146..641 17..512 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:45 Download gff for BS12705.5prime
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..641 17..512 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:45 Download gff for BS12705.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13710931..13711027 416..512 100 <- Minus
3R 13711219..13711571 63..415 100 <- Minus
3R 13711645..13711690 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:48 Download gff for BS12705.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9536653..9536749 416..512 100 <- Minus
arm_3R 9536941..9537293 63..415 100 <- Minus
arm_3R 9537367..9537412 17..62 100   Minus

BS12705.complete Sequence

527 bp assembled on 2006-11-01

GenBank Submission: FJ637275

> BS12705.complete
GAAGTTATCAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAA
TGGTGTGTGTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATG
CGTGACTTGGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAG
CGCCGGGATCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCAC
TGAATGTCCTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTT
CTAGCTCCGGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCT
GAGCAACCTGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCA
AGTTGCTGATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATT
GAGGATCCCTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCG
GCAGTGCAGCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAAC
AGATAATGTAGAAGCTTTCTAGACCAT

BS12705.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
primo-2-RC 495 CG33747-PC 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RA 1336 CG33748-RA 146..641 17..512 2480 100 Plus
primo-2-RC 1336 CG33747-RC 146..641 17..512 2480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13711218..13711572 416..62 1775 100 Minus
3R 32079331 3R 13710931..13711027 512..416 485 100 Minus
3R 32079331 3R 13711644..13711690 63..17 235 100 Minus
Blast to na_te.dros performed 2014-11-27 13:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3844..3922 504..426 107 59.5 Minus

BS12705.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:18 Download gff for BS12705.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 1..495 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:35 Download gff for BS12705.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..641 17..512 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:38 Download gff for BS12705.complete
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 146..640 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:19 Download gff for BS12705.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RB 141..636 17..512 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:52 Download gff for BS12705.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..640 17..511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:52 Download gff for BS12705.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13710932..13711027 416..511 100 <- Minus
3R 13711219..13711571 63..415 100 <- Minus
3R 13711645..13711690 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:38 Download gff for BS12705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9536654..9536749 416..511 100 <- Minus
arm_3R 9536941..9537293 63..415 100 <- Minus
arm_3R 9537367..9537412 17..62 100   Minus

BS12705.pep Sequence

Translation from 16 to 510

> BS12705.pep
MGKRSQKSSVLMVCVGNLCRSPIAEAVMRDLVARAGLQGEWHVESAGIED
WHSGHQPDERALNVLARHNIEYNGKARVLAPEDFLEFDYIFAMDLSNLAA
LRRMAPKGTTAKLLILGNFGLKPDERIIEDPYYDIGEASFEEIYRQCSIA
CRNFLKQARLKQIM*

BS12705.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
primo-2-PC 164 CG33747-PC 1..164 1..164 853 100 Plus
primo-1-PB 155 CG33748-PB 5..151 10..157 397 50 Plus
primo-1-PA 155 CG33748-PA 5..151 10..157 397 50 Plus
CG31469-PA 164 CG31469-PA 3..151 10..156 324 42.7 Plus
CG14297-PA 250 CG14297-PA 6..152 10..155 209 31.5 Plus