Clone BS12706 Report

Search the DGRC for BS12706

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptms(2)35Ci-RA
Protein status:BS12706.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12706.5prime Sequence

432 bp (432 high quality bases) assembled on 2006-10-13

> BS12706.5prime
GAAGTTATCAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTA
GTCTAAGAATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGAT
GTATTAGATACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGA
TATACTACTCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCAT
TGGTTCTTTTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTT
CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACAT
GGTGATTGCCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGT
TCATTATGATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTAC
TACCAATCGGAGGTTTAGAAGCTTTCTAGACC

BS12706.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31733-PA 402 ms(2)35Ci-RA 1..402 17..418 2010 100 Plus
CG31733-PB 627 ms(2)35Ci-RB 1..349 17..365 1745 100 Plus
CG31733-PB 627 ms(2)35Ci-RB 354..406 366..418 265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 1489 CG31733-RC 213..614 17..418 2010 100 Plus
ms(2)35Ci-RA 1127 CG31733-RA 213..614 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15292737..15292947 17..227 1055 100 Plus
2L 23513712 2L 15293003..15293147 221..365 710 99.3 Plus
2L 23513712 2L 15293209..15293261 366..418 265 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:03:01 has no hits.

BS12706.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:36 Download gff for BS12706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31733-PA 1..402 17..418 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:18 Download gff for BS12706.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..614 7..418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:06 Download gff for BS12706.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..614 7..418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:06 Download gff for BS12706.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15292735..15292946 14..226 99 -> Plus
2L 15293009..15293147 227..365 100 -> Plus
2L 15293209..15293261 366..418 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:18 Download gff for BS12706.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15292735..15292946 14..226 99 -> Plus
arm_2L 15293009..15293147 227..365 100 -> Plus
arm_2L 15293209..15293261 366..418 100   Plus

BS12706.3prime Sequence

432 bp (432 high quality bases) assembled on 2006-10-13

> BS12706.3prime
ATGGTCTAGAAAGCTTCTAAACCTCCGATTGGTAGTAGCTCAGCACGATC
ACGACGTCCGCAGATACAAAGGCAATCATAATGAACGCATAGGATATCAA
AACGTAATCGGTTCTGCCAAGGGAGGCAATCACCATGTGATTGGTCATTT
CGAGCATCAGGCCACAAAGAGAAGTCACCAGATGAACTGGCAGCAAATGC
GGATTTTCCCGAAAAAGTGCAGTCAAAAGAACCAATGCGGAAATGATATT
CCAAATGGTGGAAATTATCCAGAGGAGTAGTATATCAGCGCAATATTGCG
ACTTAGTATATATAGTCGCTACTGTATCTAATACATCCATTGTAAGACCT
GCGTACGCAATTGAAAATGCGCCAATTCTTAGACTAAAACAATAGCAGAA
CTTCTTGATTATTGGCATGTCGACTGATAACT

BS12706.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31733-PA 402 ms(2)35Ci-RA 1..402 418..17 2010 100 Minus
CG31733-PB 627 ms(2)35Ci-RB 1..349 418..70 1745 100 Minus
CG31733-PB 627 ms(2)35Ci-RB 354..406 69..17 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 1489 CG31733-RC 213..614 418..17 2010 100 Minus
ms(2)35Ci-RA 1127 CG31733-RA 213..614 418..17 2010 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15292737..15292947 418..208 1055 100 Minus
2L 23513712 2L 15293003..15293147 214..70 710 99.3 Minus
2L 23513712 2L 15293209..15293261 69..17 265 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:02:47 has no hits.

BS12706.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:36 Download gff for BS12706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31733-PA 1..402 17..418 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:16 Download gff for BS12706.3prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..614 17..428 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:04 Download gff for BS12706.3prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..614 17..428 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:04 Download gff for BS12706.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15292735..15292946 209..421 99 -> Minus
2L 15293009..15293147 70..208 100 -> Minus
2L 15293209..15293261 17..69 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:16 Download gff for BS12706.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15292735..15292946 209..421 99 -> Minus
arm_2L 15293009..15293147 70..208 100 -> Minus
arm_2L 15293209..15293261 17..69 100   Minus

BS12706.complete Sequence

434 bp assembled on 2006-11-01

GenBank Submission: FJ637276

> BS12706.complete
GAAGTTATCAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTA
GTCTAAGAATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGAT
GTATTAGATACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGA
TATACTACTCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCAT
TGGTTCTTTTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTT
CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACAT
GGTGATTGCCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGT
TCATTATGATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTAC
TACCAATCGGAGGTTTAGAAGCTTTCTAGACCAT

BS12706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 402 CG31733-PC 1..402 17..418 2010 100 Plus
ms(2)35Ci-RA 402 CG31733-PA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 1489 CG31733-RC 213..614 17..418 2010 100 Plus
ms(2)35Ci-RA 1127 CG31733-RA 213..614 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15292737..15292947 17..227 1055 100 Plus
2L 23513712 2L 15293003..15293147 221..365 710 99.3 Plus
2L 23513712 2L 15293209..15293261 366..418 265 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:01:23 has no hits.

BS12706.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:03 Download gff for BS12706.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 1..402 17..418 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:43 Download gff for BS12706.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 127..537 7..418 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:41 Download gff for BS12706.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 213..614 17..418 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:03 Download gff for BS12706.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 127..537 7..418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:31 Download gff for BS12706.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 213..614 17..418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:31 Download gff for BS12706.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15292737..15292946 17..226 100 -> Plus
2L 15293009..15293147 227..365 100 -> Plus
2L 15293209..15293261 366..418 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:41 Download gff for BS12706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15293009..15293147 227..365 100 -> Plus
arm_2L 15293209..15293261 366..418 100   Plus
arm_2L 15292737..15292946 17..226 100 -> Plus

BS12706.pep Sequence

Translation from 16 to 417

> BS12706.pep
MPIIKKFCYCFSLRIGAFSIAYAGLTMDVLDTVATIYTKSQYCADILLLW
IISTIWNIISALVLLTALFRENPHLLPVHLVTSLCGLMLEMTNHMVIASL
GRTDYVLISYAFIMIAFVSADVVIVLSYYQSEV*

BS12706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-PC 133 CG31733-PC 1..133 1..133 673 100 Plus
ms(2)35Ci-PA 133 CG31733-PA 1..133 1..133 673 100 Plus