Clone Sequence Records
BS12706.5prime Sequence
432 bp (432 high quality bases) assembled on 2006-10-13
> BS12706.5prime
GAAGTTATCAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTA
GTCTAAGAATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGAT
GTATTAGATACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGA
TATACTACTCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCAT
TGGTTCTTTTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTT
CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACAT
GGTGATTGCCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGT
TCATTATGATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTAC
TACCAATCGGAGGTTTAGAAGCTTTCTAGACC
BS12706.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31733-PA | 402 | ms(2)35Ci-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
CG31733-PB | 627 | ms(2)35Ci-RB | 1..349 | 17..365 | 1745 | 100 | Plus |
CG31733-PB | 627 | ms(2)35Ci-RB | 354..406 | 366..418 | 265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-RC | 1489 | CG31733-RC | 213..614 | 17..418 | 2010 | 100 | Plus |
ms(2)35Ci-RA | 1127 | CG31733-RA | 213..614 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15292737..15292947 | 17..227 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 15293003..15293147 | 221..365 | 710 | 99.3 | Plus |
2L | 23513712 | 2L | 15293209..15293261 | 366..418 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:03:01 has no hits.
BS12706.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:36 Download gff for
BS12706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31733-PA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:18 Download gff for
BS12706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 204..614 | 7..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:06 Download gff for
BS12706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 204..614 | 7..418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:06 Download gff for
BS12706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15292735..15292946 | 14..226 | 99 | -> | Plus |
2L | 15293009..15293147 | 227..365 | 100 | -> | Plus |
2L | 15293209..15293261 | 366..418 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:18 Download gff for
BS12706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15292735..15292946 | 14..226 | 99 | -> | Plus |
arm_2L | 15293009..15293147 | 227..365 | 100 | -> | Plus |
arm_2L | 15293209..15293261 | 366..418 | 100 | | Plus |
BS12706.3prime Sequence
432 bp (432 high quality bases) assembled on 2006-10-13
> BS12706.3prime
ATGGTCTAGAAAGCTTCTAAACCTCCGATTGGTAGTAGCTCAGCACGATC
ACGACGTCCGCAGATACAAAGGCAATCATAATGAACGCATAGGATATCAA
AACGTAATCGGTTCTGCCAAGGGAGGCAATCACCATGTGATTGGTCATTT
CGAGCATCAGGCCACAAAGAGAAGTCACCAGATGAACTGGCAGCAAATGC
GGATTTTCCCGAAAAAGTGCAGTCAAAAGAACCAATGCGGAAATGATATT
CCAAATGGTGGAAATTATCCAGAGGAGTAGTATATCAGCGCAATATTGCG
ACTTAGTATATATAGTCGCTACTGTATCTAATACATCCATTGTAAGACCT
GCGTACGCAATTGAAAATGCGCCAATTCTTAGACTAAAACAATAGCAGAA
CTTCTTGATTATTGGCATGTCGACTGATAACT
BS12706.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31733-PA | 402 | ms(2)35Ci-RA | 1..402 | 418..17 | 2010 | 100 | Minus |
CG31733-PB | 627 | ms(2)35Ci-RB | 1..349 | 418..70 | 1745 | 100 | Minus |
CG31733-PB | 627 | ms(2)35Ci-RB | 354..406 | 69..17 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-RC | 1489 | CG31733-RC | 213..614 | 418..17 | 2010 | 100 | Minus |
ms(2)35Ci-RA | 1127 | CG31733-RA | 213..614 | 418..17 | 2010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15292737..15292947 | 418..208 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 15293003..15293147 | 214..70 | 710 | 99.3 | Minus |
2L | 23513712 | 2L | 15293209..15293261 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:02:47 has no hits.
BS12706.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:36 Download gff for
BS12706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31733-PA | 1..402 | 17..418 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:16 Download gff for
BS12706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 204..614 | 17..428 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:04 Download gff for
BS12706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 204..614 | 17..428 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:04 Download gff for
BS12706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15292735..15292946 | 209..421 | 99 | -> | Minus |
2L | 15293009..15293147 | 70..208 | 100 | -> | Minus |
2L | 15293209..15293261 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:16 Download gff for
BS12706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15292735..15292946 | 209..421 | 99 | -> | Minus |
arm_2L | 15293009..15293147 | 70..208 | 100 | -> | Minus |
arm_2L | 15293209..15293261 | 17..69 | 100 | | Minus |
BS12706.complete Sequence
434 bp assembled on 2006-11-01
GenBank Submission: FJ637276
> BS12706.complete
GAAGTTATCAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTA
GTCTAAGAATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGAT
GTATTAGATACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGA
TATACTACTCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCAT
TGGTTCTTTTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTT
CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACAT
GGTGATTGCCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGT
TCATTATGATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTAC
TACCAATCGGAGGTTTAGAAGCTTTCTAGACCAT
BS12706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-RC | 402 | CG31733-PC | 1..402 | 17..418 | 2010 | 100 | Plus |
ms(2)35Ci-RA | 402 | CG31733-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-RC | 1489 | CG31733-RC | 213..614 | 17..418 | 2010 | 100 | Plus |
ms(2)35Ci-RA | 1127 | CG31733-RA | 213..614 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15292737..15292947 | 17..227 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 15293003..15293147 | 221..365 | 710 | 99.3 | Plus |
2L | 23513712 | 2L | 15293209..15293261 | 366..418 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:01:23 has no hits.
BS12706.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:03 Download gff for
BS12706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:43 Download gff for
BS12706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 127..537 | 7..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:41 Download gff for
BS12706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 213..614 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:03 Download gff for
BS12706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 127..537 | 7..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:31 Download gff for
BS12706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 213..614 | 17..418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:31 Download gff for
BS12706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15292737..15292946 | 17..226 | 100 | -> | Plus |
2L | 15293009..15293147 | 227..365 | 100 | -> | Plus |
2L | 15293209..15293261 | 366..418 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:41 Download gff for
BS12706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15293009..15293147 | 227..365 | 100 | -> | Plus |
arm_2L | 15293209..15293261 | 366..418 | 100 | | Plus |
arm_2L | 15292737..15292946 | 17..226 | 100 | -> | Plus |
BS12706.pep Sequence
Translation from 16 to 417
> BS12706.pep
MPIIKKFCYCFSLRIGAFSIAYAGLTMDVLDTVATIYTKSQYCADILLLW
IISTIWNIISALVLLTALFRENPHLLPVHLVTSLCGLMLEMTNHMVIASL
GRTDYVLISYAFIMIAFVSADVVIVLSYYQSEV*
BS12706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-PC | 133 | CG31733-PC | 1..133 | 1..133 | 673 | 100 | Plus |
ms(2)35Ci-PA | 133 | CG31733-PA | 1..133 | 1..133 | 673 | 100 | Plus |