Clone Sequence Records
BS12711.3prime Sequence
678 bp (678 high quality bases) assembled on 2006-10-13
> BS12711.3prime
ATGGTCTAGAAAGCTTTTAATCTATCAGTCCCGTTTCGCAGTCGTAGGCT
TCCTCGCCGGACTCGAAAATGGGAAAACTCATGCCAGTACGACGGGCAAT
CACCGAGGCCAGTTCCTCGGAGTTGTTCTCCTTGCGCGGCTGGATGTATC
GGTCCAGCAGAAGGACCGTGGCCGTATTCCGACAATTGGACACAGTGGCG
GTTATGTGAAGCGGCGTCTGCTTGCCGTCGGATTCCGCATTTACATCGGC
GCCAAACTGCAGCAGCAAATGGGCGCAATCCGCATTGTTCCACTTGCAGG
CGGAGTGCAATGGCGTCCATCCCAGCTCCGTGCGGGCGTTGGGATTGGCA
TGGTACTGCAGCAGCAACTTGGCCATATCCACAAAGTTATTATAGGCAGC
TCGGTGCAGCGGCGTGTATCCGTCGTTATCCTTGGCGTTCACAGTGTCCG
CGTCCAATTTCAGGATTTCCCGCACCTCGCTGATGCGGTTCTCGTTCACC
GCCCACAGAATCATGCGTTCAATGCTGCTTTGTGGGTTCTTGTCCTCCTC
GATCAGTTCGTCGGCATCGTCGTCCCAGCCGCTCACGAACATTCCGCGCG
GCACTTTGGCGTGGCGCAGCTTCTCCACCTGTGATTTTTCATCATCGGAA
TCGTAATCCCCCATGTCGACTGATAACT
BS12711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4140-PA | 648 | CG4140-RA | 1..648 | 664..17 | 3065 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Be-RA | 800 | CG4140-RA | 91..738 | 664..17 | 3135 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15006645..15007156 | 17..528 | 2485 | 99 | Plus |
2L | 23513712 | 2L | 15007205..15007341 | 528..664 | 655 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:03:15 has no hits.
BS12711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:38 Download gff for
BS12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4140-PA | 1..648 | 17..664 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:21 Download gff for
BS12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Be-RA | 85..744 | 11..672 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:08 Download gff for
BS12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Be-RA | 85..744 | 11..672 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:08 Download gff for
BS12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15006639..15007156 | 11..528 | 98 | <- | Plus |
2L | 15007206..15007347 | 529..672 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:21 Download gff for
BS12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15006639..15007156 | 11..528 | 98 | <- | Plus |
arm_2L | 15007206..15007347 | 529..672 | 95 | | Plus |
BS12711.5prime Sequence
678 bp (678 high quality bases) assembled on 2006-10-13
> BS12711.5prime
GAAGTTATCAGTCGACATGGGGGATTACGATTCCGATGATGAAAAATCAC
AGGTGGAGAAGCTGCGCCACGCCAAAGTGCCGCGCGGAATGTTCGTGAGC
GGCTGGGACGACGATGCCGACGAACTGATCGAGGAGGACAAGAACCCACA
AAGCAGCATTGAACGCATGATTCTGTGGGCGGTGAACGAGAACCGCATCA
GCGAGGTGCGGGAAATCCTGAAATTGGACGCGGACACTGTGAACGCCAAG
GATAACGACGGATACACGCCGCTGCACCGAGCTGCCTATAATAACTTTGT
GGATATGGCCAAGTTGCTGCTGCAGTACCATGCCAATCCCAACGCCCGCA
CGGAGCTGGGATGGACGCCATTGCACTCCGCCTGCAAGTGGAACAATGCG
GATTGCGCCCATTTGCTGCTGCAGTTTGGCGCCGATGTAAATGCGGAATC
CGACGGCAAGCAGACGCCGCTTCACATAACCGCCACTGTGTCCAATTGTC
GGAATACGGCCACGGTCCTTCTGCTGGACCGATACATCCAGCCGCGCAAG
GAGAACAACTCCGAGGAACTGGCCTCGGTGATTGCCCGTCGTACTGGCAT
GAGTTTTCCCATTTTCGAGTCCGGCGAGGAAGCCTACGACTGCGAAACGG
GACTGATAGATTAAAAGCTTTCTAGACC
BS12711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4140-PA | 648 | CG4140-RA | 1..648 | 17..664 | 3065 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Be-RA | 800 | CG4140-RA | 91..738 | 17..664 | 3135 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15006645..15007156 | 664..153 | 2485 | 99 | Minus |
2L | 23513712 | 2L | 15007205..15007341 | 153..17 | 655 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:28:01 has no hits.
BS12711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:39 Download gff for
BS12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4140-PA | 1..648 | 17..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:56 Download gff for
BS12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Be-RA | 85..744 | 9..670 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:37 Download gff for
BS12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Be-RA | 85..744 | 9..670 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:37 Download gff for
BS12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15007206..15007347 | 9..152 | 95 | | Minus |
2L | 15006639..15007156 | 153..670 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:56 Download gff for
BS12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15006639..15007156 | 153..670 | 98 | <- | Minus |
arm_2L | 15007206..15007347 | 9..152 | 95 | | Minus |
BS12711.complete Sequence
680 bp assembled on 2006-11-01
GenBank Submission: FJ637277
> BS12711.complete
GAAGTTATCAGTCGACATGGGGGATTACGATTCCGATGATGAAAAATCAC
AGGTGGAGAAGCTGCGCCACGCCAAAGTGCCGCGCGGAATGTTCGTGAGC
GGCTGGGACGACGATGCCGACGAACTGATCGAGGAGGACAAGAACCCACA
AAGCAGCATTGAACGCATGATTCTGTGGGCGGTGAACGAGAACCGCATCA
GCGAGGTGCGGGAAATCCTGAAATTGGACGCGGACACTGTGAACGCCAAG
GATAACGACGGATACACGCCGCTGCACCGAGCTGCCTATAATAACTTTGT
GGATATGGCCAAGTTGCTGCTGCAGTACCATGCCAATCCCAACGCCCGCA
CGGAGCTGGGATGGACGCCATTGCACTCCGCCTGCAAGTGGAACAATGCG
GATTGCGCCCATTTGCTGCTGCAGTTTGGCGCCGATGTAAATGCGGAATC
CGACGGCAAGCAGACGCCGCTTCACATAACCGCCACTGTGTCCAATTGTC
GGAATACGGCCACGGTCCTTCTGCTGGACCGATACATCCAGCCGCGCAAG
GAGAACAACTCCGAGGAACTGGCCTCGGTGATTGCCCGTCGTACTGGCAT
GAGTTTTCCCATTTTCGAGTCCGGCGAGGAAGCCTACGACTGCGAAACGG
GACTGATAGATTAAAAGCTTTCTAGACCAT
BS12711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Be-RA | 648 | CG4140-PA | 1..648 | 17..664 | 3135 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Be-RA | 800 | CG4140-RA | 91..738 | 17..664 | 3135 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15006645..15007156 | 664..153 | 2485 | 99 | Minus |
2L | 23513712 | 2L | 15007205..15007341 | 153..17 | 655 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:03:16 has no hits.
BS12711.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:42 Download gff for
BS12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4140-RA | 1..648 | 17..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:33 Download gff for
BS12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4140-RA | 58..717 | 9..670 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:35 Download gff for
BS12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Be-RA | 91..736 | 17..662 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:42 Download gff for
BS12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4140-RA | 58..717 | 9..670 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:52 Download gff for
BS12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Be-RA | 91..736 | 17..662 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:52 Download gff for
BS12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15006647..15007156 | 153..662 | 99 | <- | Minus |
2L | 15007206..15007341 | 17..152 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:35 Download gff for
BS12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15006647..15007156 | 153..662 | 99 | <- | Minus |
arm_2L | 15007206..15007341 | 17..152 | 98 | | Minus |
BS12711.pep Sequence
Translation from 16 to 663
> BS12711.pep
MGDYDSDDEKSQVEKLRHAKVPRGMFVSGWDDDADELIEEDKNPQSSIER
MILWAVNENRISEVREILKLDADTVNAKDNDGYTPLHRAAYNNFVDMAKL
LLQYHANPNARTELGWTPLHSACKWNNADCAHLLLQFGADVNAESDGKQT
PLHITATVSNCRNTATVLLLDRYIQPRKENNSEELASVIARRTGMSFPIF
ESGEEAYDCETGLID*
BS12711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Be-PA | 215 | CG4140-PA | 1..215 | 1..215 | 1138 | 100 | Plus |
Ank-PE | 1549 | CG1651-PE | 365..452 | 81..169 | 186 | 47.2 | Plus |
Ank-PD | 1549 | CG1651-PD | 365..452 | 81..169 | 186 | 47.2 | Plus |
Ank-PC | 1549 | CG1651-PC | 365..452 | 81..169 | 186 | 47.2 | Plus |
Ank-PB | 1549 | CG1651-PB | 365..452 | 81..169 | 186 | 47.2 | Plus |
Ank-PE | 1549 | CG1651-PE | 523..608 | 75..160 | 165 | 38.4 | Plus |
Ank-PD | 1549 | CG1651-PD | 523..608 | 75..160 | 165 | 38.4 | Plus |
Ank-PC | 1549 | CG1651-PC | 523..608 | 75..160 | 165 | 38.4 | Plus |
Ank-PE | 1549 | CG1651-PE | 406..541 | 55..194 | 163 | 33.6 | Plus |
Ank-PD | 1549 | CG1651-PD | 406..541 | 55..194 | 163 | 33.6 | Plus |
Ank-PC | 1549 | CG1651-PC | 406..541 | 55..194 | 163 | 33.6 | Plus |
Ank-PE | 1549 | CG1651-PE | 183..305 | 29..153 | 154 | 35.4 | Plus |
Ank-PD | 1549 | CG1651-PD | 183..305 | 29..153 | 154 | 35.4 | Plus |
Ank-PC | 1549 | CG1651-PC | 183..305 | 29..153 | 154 | 35.4 | Plus |
Ank-PE | 1549 | CG1651-PE | 339..473 | 25..156 | 148 | 32.6 | Plus |
Ank-PD | 1549 | CG1651-PD | 339..473 | 25..156 | 148 | 32.6 | Plus |
Ank-PC | 1549 | CG1651-PC | 339..473 | 25..156 | 148 | 32.6 | Plus |