Clone BS12711 Report

Search the DGRC for BS12711

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:11
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)35Be-RA
Protein status:BS12711.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12711.3prime Sequence

678 bp (678 high quality bases) assembled on 2006-10-13

> BS12711.3prime
ATGGTCTAGAAAGCTTTTAATCTATCAGTCCCGTTTCGCAGTCGTAGGCT
TCCTCGCCGGACTCGAAAATGGGAAAACTCATGCCAGTACGACGGGCAAT
CACCGAGGCCAGTTCCTCGGAGTTGTTCTCCTTGCGCGGCTGGATGTATC
GGTCCAGCAGAAGGACCGTGGCCGTATTCCGACAATTGGACACAGTGGCG
GTTATGTGAAGCGGCGTCTGCTTGCCGTCGGATTCCGCATTTACATCGGC
GCCAAACTGCAGCAGCAAATGGGCGCAATCCGCATTGTTCCACTTGCAGG
CGGAGTGCAATGGCGTCCATCCCAGCTCCGTGCGGGCGTTGGGATTGGCA
TGGTACTGCAGCAGCAACTTGGCCATATCCACAAAGTTATTATAGGCAGC
TCGGTGCAGCGGCGTGTATCCGTCGTTATCCTTGGCGTTCACAGTGTCCG
CGTCCAATTTCAGGATTTCCCGCACCTCGCTGATGCGGTTCTCGTTCACC
GCCCACAGAATCATGCGTTCAATGCTGCTTTGTGGGTTCTTGTCCTCCTC
GATCAGTTCGTCGGCATCGTCGTCCCAGCCGCTCACGAACATTCCGCGCG
GCACTTTGGCGTGGCGCAGCTTCTCCACCTGTGATTTTTCATCATCGGAA
TCGTAATCCCCCATGTCGACTGATAACT

BS12711.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4140-PA 648 CG4140-RA 1..648 664..17 3065 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Be-RA 800 CG4140-RA 91..738 664..17 3135 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15006645..15007156 17..528 2485 99 Plus
2L 23513712 2L 15007205..15007341 528..664 655 98.5 Plus
Blast to na_te.dros performed on 2015-02-08 12:03:15 has no hits.

BS12711.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:38 Download gff for BS12711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4140-PA 1..648 17..664 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:21 Download gff for BS12711.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Be-RA 85..744 11..672 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:08 Download gff for BS12711.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Be-RA 85..744 11..672 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:08 Download gff for BS12711.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15006639..15007156 11..528 98 <- Plus
2L 15007206..15007347 529..672 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:21 Download gff for BS12711.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15006639..15007156 11..528 98 <- Plus
arm_2L 15007206..15007347 529..672 95   Plus

BS12711.5prime Sequence

678 bp (678 high quality bases) assembled on 2006-10-13

> BS12711.5prime
GAAGTTATCAGTCGACATGGGGGATTACGATTCCGATGATGAAAAATCAC
AGGTGGAGAAGCTGCGCCACGCCAAAGTGCCGCGCGGAATGTTCGTGAGC
GGCTGGGACGACGATGCCGACGAACTGATCGAGGAGGACAAGAACCCACA
AAGCAGCATTGAACGCATGATTCTGTGGGCGGTGAACGAGAACCGCATCA
GCGAGGTGCGGGAAATCCTGAAATTGGACGCGGACACTGTGAACGCCAAG
GATAACGACGGATACACGCCGCTGCACCGAGCTGCCTATAATAACTTTGT
GGATATGGCCAAGTTGCTGCTGCAGTACCATGCCAATCCCAACGCCCGCA
CGGAGCTGGGATGGACGCCATTGCACTCCGCCTGCAAGTGGAACAATGCG
GATTGCGCCCATTTGCTGCTGCAGTTTGGCGCCGATGTAAATGCGGAATC
CGACGGCAAGCAGACGCCGCTTCACATAACCGCCACTGTGTCCAATTGTC
GGAATACGGCCACGGTCCTTCTGCTGGACCGATACATCCAGCCGCGCAAG
GAGAACAACTCCGAGGAACTGGCCTCGGTGATTGCCCGTCGTACTGGCAT
GAGTTTTCCCATTTTCGAGTCCGGCGAGGAAGCCTACGACTGCGAAACGG
GACTGATAGATTAAAAGCTTTCTAGACC

BS12711.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4140-PA 648 CG4140-RA 1..648 17..664 3065 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Be-RA 800 CG4140-RA 91..738 17..664 3135 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15006645..15007156 664..153 2485 99 Minus
2L 23513712 2L 15007205..15007341 153..17 655 98.5 Minus
Blast to na_te.dros performed on 2015-02-06 10:28:01 has no hits.

BS12711.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:39 Download gff for BS12711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4140-PA 1..648 17..664 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:56 Download gff for BS12711.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Be-RA 85..744 9..670 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:37 Download gff for BS12711.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Be-RA 85..744 9..670 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:37 Download gff for BS12711.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15007206..15007347 9..152 95   Minus
2L 15006639..15007156 153..670 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:56 Download gff for BS12711.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15006639..15007156 153..670 98 <- Minus
arm_2L 15007206..15007347 9..152 95   Minus

BS12711.complete Sequence

680 bp assembled on 2006-11-01

GenBank Submission: FJ637277

> BS12711.complete
GAAGTTATCAGTCGACATGGGGGATTACGATTCCGATGATGAAAAATCAC
AGGTGGAGAAGCTGCGCCACGCCAAAGTGCCGCGCGGAATGTTCGTGAGC
GGCTGGGACGACGATGCCGACGAACTGATCGAGGAGGACAAGAACCCACA
AAGCAGCATTGAACGCATGATTCTGTGGGCGGTGAACGAGAACCGCATCA
GCGAGGTGCGGGAAATCCTGAAATTGGACGCGGACACTGTGAACGCCAAG
GATAACGACGGATACACGCCGCTGCACCGAGCTGCCTATAATAACTTTGT
GGATATGGCCAAGTTGCTGCTGCAGTACCATGCCAATCCCAACGCCCGCA
CGGAGCTGGGATGGACGCCATTGCACTCCGCCTGCAAGTGGAACAATGCG
GATTGCGCCCATTTGCTGCTGCAGTTTGGCGCCGATGTAAATGCGGAATC
CGACGGCAAGCAGACGCCGCTTCACATAACCGCCACTGTGTCCAATTGTC
GGAATACGGCCACGGTCCTTCTGCTGGACCGATACATCCAGCCGCGCAAG
GAGAACAACTCCGAGGAACTGGCCTCGGTGATTGCCCGTCGTACTGGCAT
GAGTTTTCCCATTTTCGAGTCCGGCGAGGAAGCCTACGACTGCGAAACGG
GACTGATAGATTAAAAGCTTTCTAGACCAT

BS12711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Be-RA 648 CG4140-PA 1..648 17..664 3135 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Be-RA 800 CG4140-RA 91..738 17..664 3135 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15006645..15007156 664..153 2485 99 Minus
2L 23513712 2L 15007205..15007341 153..17 655 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 15:03:16 has no hits.

BS12711.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:42 Download gff for BS12711.complete
Subject Subject Range Query Range Percent Splice Strand
CG4140-RA 1..648 17..664 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:33 Download gff for BS12711.complete
Subject Subject Range Query Range Percent Splice Strand
CG4140-RA 58..717 9..670 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:35 Download gff for BS12711.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Be-RA 91..736 17..662 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:42 Download gff for BS12711.complete
Subject Subject Range Query Range Percent Splice Strand
CG4140-RA 58..717 9..670 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:52 Download gff for BS12711.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Be-RA 91..736 17..662 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:52 Download gff for BS12711.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15006647..15007156 153..662 99 <- Minus
2L 15007206..15007341 17..152 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:35 Download gff for BS12711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15006647..15007156 153..662 99 <- Minus
arm_2L 15007206..15007341 17..152 98   Minus

BS12711.pep Sequence

Translation from 16 to 663

> BS12711.pep
MGDYDSDDEKSQVEKLRHAKVPRGMFVSGWDDDADELIEEDKNPQSSIER
MILWAVNENRISEVREILKLDADTVNAKDNDGYTPLHRAAYNNFVDMAKL
LLQYHANPNARTELGWTPLHSACKWNNADCAHLLLQFGADVNAESDGKQT
PLHITATVSNCRNTATVLLLDRYIQPRKENNSEELASVIARRTGMSFPIF
ESGEEAYDCETGLID*

BS12711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Be-PA 215 CG4140-PA 1..215 1..215 1138 100 Plus
Ank-PE 1549 CG1651-PE 365..452 81..169 186 47.2 Plus
Ank-PD 1549 CG1651-PD 365..452 81..169 186 47.2 Plus
Ank-PC 1549 CG1651-PC 365..452 81..169 186 47.2 Plus
Ank-PB 1549 CG1651-PB 365..452 81..169 186 47.2 Plus
Ank-PE 1549 CG1651-PE 523..608 75..160 165 38.4 Plus
Ank-PD 1549 CG1651-PD 523..608 75..160 165 38.4 Plus
Ank-PC 1549 CG1651-PC 523..608 75..160 165 38.4 Plus
Ank-PE 1549 CG1651-PE 406..541 55..194 163 33.6 Plus
Ank-PD 1549 CG1651-PD 406..541 55..194 163 33.6 Plus
Ank-PC 1549 CG1651-PC 406..541 55..194 163 33.6 Plus
Ank-PE 1549 CG1651-PE 183..305 29..153 154 35.4 Plus
Ank-PD 1549 CG1651-PD 183..305 29..153 154 35.4 Plus
Ank-PC 1549 CG1651-PC 183..305 29..153 154 35.4 Plus
Ank-PE 1549 CG1651-PE 339..473 25..156 148 32.6 Plus
Ank-PD 1549 CG1651-PD 339..473 25..156 148 32.6 Plus
Ank-PC 1549 CG1651-PC 339..473 25..156 148 32.6 Plus