BS12714.3prime Sequence
717 bp (716 high quality bases) assembled on 2006-10-13
> BS12714.3prime
ATACAGGGGNGNGNNNNNNNNNNGGNNNNNNNNGNNNGNNCCTTANAGGG
GGNNNGNGANNNGGGGNNNNGNNGGNNNGNNNNNNNNGNNGGNNNNNNGG
AAGGGNAANGGNNNGGGNNNNNNGNNNGNNANNNGAGNGGNGAAGGGNGG
AGGNNANNANGNNNNGNGNGGGNNNNNGNAGGGNGGNNGAANNNNAGAGA
ANNGNNNGGNNGGNGGNANNGAANAGGGGGNGNGNNGAGNNGAGGNNNNG
NAGNGAGGNGNNNAGNNGGNAGNGAANNNGGNANAGAANGGNANGNANNN
GAGGGAAANNNANNGNNANGGNGNGNNGANNGNNNNGNAGNNNNNGGNGN
NGNNGNAANANGGNNNNNAGNANNNNNNNNGGANGGAAGAANNNANGGAA
GNGANGGNGNNGNNNAAAGNNNAGNGANNNNNNNGGNNNNGGGNNGAAGN
AGGNNNNGANNNNNGNNAANGAANNGANGGNAAGGNNAGGGNNANGGNNN
GNNANNGAAGAGNNGNNGNNANAANGGAAGNGNNNNGNNGAANNGNGNNG
NGGNNGNNNGGANANNAGNNNNGANGGNAGGGGAGGNGNAANNANAGGNA
AGGGAAANGGAGANNAAGAAGNGGGNAGNGGNNNNGNNGGNNGNGGNNNN
NGGGGGGNANGNANNGANNNNANGGNNGAGGGAAAANGGGNNAAAAAANA
GANGAAGGGNAANNGGG
BS12714.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-09 20:36:57 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 07:15:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2015-02-12 07:15:34 has no hits.
Blast to na_te.dros performed on 2015-02-12 07:15:36 has no hits.
BS12714.3prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-12 11:24:29 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-12 11:24:29 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-29 07:14:35 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-29 07:14:35 has no hits.
BS12714.5prime Sequence
876 bp (785 high quality bases) assembled on 2006-10-13
> BS12714.5prime
GAAGTTATCAGTCGACATGACCAATCGACTGGCCTTGCACCACATCCTGA
CCACCCAGCTGCGAAGGGACTGGGAACAGGAGGAGAGCGCCAAGACCAGG
CTGTCGCAGCTGTCCAGGAGGGACAGGATCAAGGCCTCGCTAAGATCGAG
TCAGTTGCCAGGACGTTACCTGTTGCCCGACACCAGAAAGACCTACGACA
ATATGGTGGCCAATATTCACTCGACCATGAAGTCGGTACGAGCACCACGA
AGACCACGGCCAACGGGGCCGCTGCCCACATCTGGAACTCCGAATCCAGT
ACCAGTAGTTGCACCACCACTGCCATCGAAACTGGTGTCCAAGCAACCGC
AACGCAAGTCGGCGGGGCGCATCAAGGGTGGCGGCAACTCTTCGAAAGCG
GACAGTGGCCATGGCATTGCCATCAAATCATTGGCGAAGGTCAAGGCCTG
CATCAACCAGAAGCAGAAGAGATCGCGGGGCTTTGAGCAGCACAATCGCA
TCCGTGAAGTCATCCAACAGAAGAAAGTGCTGGAGACCATGTTGCAGCAG
CACAAGAAGCTGCAAAGCGATCGACACACCATAGCGATGGATATCCAGCG
AATGCGTGCCGATCTGGACAGGATTCGCAACAAGCTGGACACCTCGCTGC
AGAGCCTCAACTCGACGCGCACCCTATTCAGTGCCGCCAACAAGGCGAGT
CTCAGGAAGTCGACCGCCCTGCAGAAGCCCACGCAAAACATGGTGACCTC
CACCAATCGCCGCTCGGGTGGCAAACGAAAGGCCCGGACCGTTTGCATTC
CGATGAACCGGCAAAGTGTGCTGACAAACAAGGCCCCTATTCTCAAACGA
AAAGTTCGGTGAAAGCTTTCTAGACC
BS12714.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-PA | 846 | CG7164-RA | 1..846 | 17..862 | 4080 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-RB | 1236 | CG7164-RB | 170..1018 | 16..864 | 4155 | 99.3 | Plus |
| CG7164-RA | 1026 | CG7164-RA | 170..1018 | 16..864 | 4155 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7781912..7782542 | 234..864 | 3065 | 99 | Plus |
| 2L | 23513712 | 2L | 7781634..7781851 | 16..233 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:42:53 has no hits.
BS12714.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:40 Download gff for
BS12714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:18:11 Download gff for
BS12714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 165..1018 | 11..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:32 Download gff for
BS12714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 165..1018 | 11..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:32 Download gff for
BS12714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7781629..7781851 | 11..233 | 99 | -> | Plus |
| 2L | 7781912..7782542 | 234..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:18:11 Download gff for
BS12714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7781629..7781851 | 11..233 | 99 | -> | Plus |
| arm_2L | 7781912..7782542 | 234..864 | 99 | | Plus |
BS12714.complete Sequence
878 bp assembled on 2008-08-14
GenBank Submission: FJ637278
> BS12714.complete
GAAGTTATCAGTCGACATGACCAATCGACTGGCCTTGCACCACATCCTGA
CCACCCAGCTGCGAAGGGACTGGGAACAGGAGGAGAGCGCCAAGACCAGG
CTGTCGCAGCTGTCCAGGAGGGACAGGATCAAGGCCTCGCTAAGATCGAG
TCAGTTGCCAGGACGTTACCTGTTGCCCGACACCAGAAAGACCTACGACA
ATATGGTGGCCAATATTCACTCGACCATGAAGTCGGTACGAGCACCACGA
AGACCACGGCCAACGGGGCCGCTGCCCACATCTGGAACTCCGAATCCAGT
ACCAGTAGTTGCACCACCACTGCCATCGAAACTGGTGTCCAAGCAACCGC
AACGCAAGTCGGCGGGGCGCATCAAGGGTGGCGGCAACTCTTCGAAAGCG
GACAGTGGCCATGGCATTGCCATCAAATCATTGGCGAAGGTCAAGGCCTG
CATCAACCAGAAGCAGAAGAGATCGCGGGGCTTTGAGCAGCACAATCGCA
TCCGTGAAGTCATCCAACAGAAGAAAGTGCTGGAGACCATGTTGCAGCAG
CACAAGAAGCTGCAAAGCGATCGACACACCATAGCGATGGATATCCAGCG
AATGCGTGCCGATCTGGACAGGATTCGCAACAAGCTGGACACCTCGCTGC
AGAGCCTCAACTCGACGCGCACCCTATTCAGTGCCGCCAACAAGGCGAGT
CTCAGGAAGTCGACCGCCCTGCAGAAGCCCACGCAAAACATGGTGACCTC
CACCAATCGCCGCTCGGGTGGCAAACGAAAGGCCCGGACCGTTGCCATTC
CGATGAACCGGCAAAGTGTGCTGACCAACAAGGCCCCTATTCTCAAACGA
AAAGTTCGGTGAAAGCTTTCTAGACCAT
BS12714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-RB | 846 | CG7164-PB | 1..846 | 17..862 | 4185 | 99.6 | Plus |
| CG7164-RA | 846 | CG7164-PA | 1..846 | 17..862 | 4185 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-RB | 1236 | CG7164-RB | 170..1018 | 16..864 | 4200 | 99.6 | Plus |
| CG7164-RA | 1026 | CG7164-RA | 170..1018 | 16..864 | 4200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7781912..7782542 | 234..864 | 3110 | 99.5 | Plus |
| 2L | 23513712 | 2L | 7781634..7781851 | 16..233 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:38 has no hits.
BS12714.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:29 Download gff for
BS12714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 127..980 | 11..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:40 Download gff for
BS12714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 171..1015 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:49 Download gff for
BS12714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 133..977 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:37 Download gff for
BS12714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 171..1015 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:37 Download gff for
BS12714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7781635..7781851 | 17..233 | 100 | -> | Plus |
| 2L | 7781912..7782539 | 234..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:40 Download gff for
BS12714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7781635..7781851 | 17..233 | 100 | -> | Plus |
| arm_2L | 7781912..7782539 | 234..861 | 99 | | Plus |
BS12714.pep Sequence
Translation from 16 to 861
> BS12714.pep
MTNRLALHHILTTQLRRDWEQEESAKTRLSQLSRRDRIKASLRSSQLPGR
YLLPDTRKTYDNMVANIHSTMKSVRAPRRPRPTGPLPTSGTPNPVPVVAP
PLPSKLVSKQPQRKSAGRIKGGGNSSKADSGHGIAIKSLAKVKACINQKQ
KRSRGFEQHNRIREVIQQKKVLETMLQQHKKLQSDRHTIAMDIQRMRADL
DRIRNKLDTSLQSLNSTRTLFSAANKASLRKSTALQKPTQNMVTSTNRRS
GGKRKARTVAIPMNRQSVLTNKAPILKRKVR*
BS12714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-PB | 281 | CG7164-PB | 1..281 | 1..281 | 1412 | 100 | Plus |
| CG7164-PA | 281 | CG7164-PA | 1..281 | 1..281 | 1412 | 100 | Plus |
