Clone Sequence Records
BS12715.3prime Sequence
680 bp (680 high quality bases) assembled on 2006-10-13
> BS12715.3prime
ATGGTCTAGAAAGCTTTTATTTTGTGTTTAATATCCTTCGCTTGGGACCA
GCTAAGATATCCCCTCTAAGGGACTCCAGGTTGATGCTATTCATCTTTGT
TATGCCATTTTTGCTTATCAGGAACAAATCTATGTTGCGCAAGTTGATAA
CGAATCGTTTATACAGCTCAATCACACACTTTTTGATAACATCATAGGCT
GCCTGCGTATCCATGTCCGGTTTGTAGAACTCCTCGAGAATGGGAGTGCA
GAAGTTCATGGCGGCTCCGTGGCCACCGTACCGAACGGGAACCGAGTTAC
CCAAATAATCGATGTAGTGCAACTCGGGACCGCTGGTCAAATCGTATCCG
CCCACCAACAGCGACACCTGGAACGTGCAATCGCTCTTCAAATAGGCGGA
CAAATGCCTCCGGATGAAGTGCACCGCTCCGCGAACGGTTAAGTCGTATC
CGTTGGTTATCTTGTAAAGATCCATGTTCCGGAGGATGAAATCCGAGAAC
TTCAGGCAGTCTCCACCGTCCCCAGCGGTCGACAATCATGCAGTAGTCCG
AGATGCGGTGAGTCTTTCTGACCTCGTCATCCAGCCACATCGCCGACTTG
TTCCTCATGGTATCCGAGGCCAGTATGATGAAAATCAGTTCCTTTAACAC
CCAAAATGGTTTCCATGTCGACTGATAACT
BS12715.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17301-PA | 648 | CG17301-RA | 131..648 | 534..17 | 2590 | 100 | Minus |
CG17301-PA | 648 | CG17301-RA | 33..131 | 633..535 | 495 | 100 | Minus |
CG17301-PA | 648 | CG17301-RA | 1..35 | 666..632 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-RA | 830 | CG17301-RA | 102..749 | 666..17 | 3200 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2653288..2653845 | 575..17 | 2745 | 99.8 | Minus |
2L | 23513712 | 2L | 2653147..2653237 | 666..575 | 410 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:11:08 has no hits.
BS12715.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:40 Download gff for
BS12715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-PA | 1..648 | 17..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:48 Download gff for
BS12715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..749 | 17..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:00 Download gff for
BS12715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..749 | 17..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:00 Download gff for
BS12715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2653147..2653237 | 575..666 | 98 | -> | Minus |
2L | 2653289..2653845 | 17..574 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:48 Download gff for
BS12715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2653147..2653237 | 575..666 | 98 | -> | Minus |
arm_2L | 2653289..2653845 | 17..574 | 99 | | Minus |
BS12715.5prime Sequence
590 bp (511 high quality bases) assembled on 2006-10-13
> BS12715.5prime
GAAGTTATCAGTCGACATGGAAACCATTTTGGGTGTTAAAGGAACTGATT
TCATCATACTGGCCTCGGATACCATGAGGAACAAGTCGGCGATGTGGCTG
GATGACGAGGTCAGAAAGACTCACCGCATCTCGGACTACTGCATGATGTC
GACCGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCC
GGAACATGGATCTTTACAAGATAACCAACGGATACGACTTAACCGTTCGC
GGAGCGGTGCACTTCATCCGGAGGCATTTGTCCGCCTATTTGAAGAGCGA
TTGCACGTTCCAGGTGTCGCTGTTGGTGGGCGGATACGATTTGACCAGCG
GTCCCGAGTTGCACTACATCGATTATTTGGGTAACTCGGTTCCCGTTCGG
TACGGTGGCCACGGAGCCGCCATGAAACTTCTGCACTCCCATTCTCGAGG
AGTTCTACAAACCGGACATGGATACGCAGGCAGCCTATGATGTTATCAAA
AAGTGTGTGATTGAACTGTATAAACGATTCGTTATCAACTTGCGCAACAT
AGATTTGTTCCTGATAAGCAAAAATGGCATAACAAAGATG
BS12715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17301-PA | 648 | CG17301-RA | 1..410 | 17..426 | 2050 | 100 | Plus |
CG17301-PA | 648 | CG17301-RA | 409..573 | 426..590 | 800 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-RA | 830 | CG17301-RA | 102..674 | 17..590 | 2830 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2653288..2653770 | 107..590 | 2355 | 99.6 | Plus |
2L | 23513712 | 2L | 2653147..2653237 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:23:47 has no hits.
BS12715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:41 Download gff for
BS12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-PA | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:26 Download gff for
BS12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..674 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:33 Download gff for
BS12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..674 | 17..590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:33 Download gff for
BS12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2653147..2653237 | 17..107 | 100 | -> | Plus |
2L | 2653289..2653770 | 108..590 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:26 Download gff for
BS12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2653147..2653237 | 17..107 | 100 | -> | Plus |
arm_2L | 2653289..2653770 | 108..590 | 99 | | Plus |
BS12715.complete Sequence
680 bp assembled on 2006-11-01
GenBank Submission: FJ637279
> BS12715.complete
GAAGTTATCAGTCGACATGGAAACCATTTTGGGTGTTAAAGGAACTGATT
TCATCATACTGGCCTCGGATACCATGAGGAACAAGTCGGCGATGTGGCTG
GATGACGAGGTCAGAAAGACTCACCGCATCTCGGACTACTGCATGATGTC
GACCGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCC
GGAACATGGATCTTTACAAGATAACCAACGGATACGACTTAACCGTTCGC
GGAGCGGTGCACTTCATCCGGAGGCATTTGTCCGCCTATTTGAAGAGCGA
TTGCACGTTCCAGGTGTCGCTGTTGGTGGGCGGATACGATTTGACCAGCG
GTCCCGAGTTGCACTACATCGATTATTTGGGTAACTCGGTTCCCGTTCGG
TACGGTGGCCACGGAGCCGCCATGAACTTCTGCACTCCCATTCTCGAGGA
GTTCTACAAACCGGACATGGATACGCAGGCAGCCTATGATGTTATCAAAA
AGTGTGTGATTGAGCTGTATAAACGATTCGTTATCAACTTGCGCAACATA
GATTTGTTCCTGATAAGCAAAAATGGCATAACAAAGATGAATAGCATCAA
CCTGGAGTCCCTTAGAGGGGATATCTTAGCTGGTCCCAAGCGAAGGATAT
TAAACACAAAATAAAAGCTTTCTAGACCAT
BS12715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-RA | 648 | CG17301-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-RA | 830 | CG17301-RA | 102..749 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2653288..2653845 | 107..664 | 2790 | 100 | Plus |
2L | 23513712 | 2L | 2653147..2653237 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:45:33 has no hits.
BS12715.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:16 Download gff for
BS12715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-RA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:42 Download gff for
BS12715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-RA | 36..683 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:44 Download gff for
BS12715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..736 | 17..651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:16 Download gff for
BS12715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-RA | 36..683 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:55 Download gff for
BS12715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..736 | 17..651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:55 Download gff for
BS12715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2653147..2653237 | 17..107 | 100 | -> | Plus |
2L | 2653289..2653832 | 108..651 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:44 Download gff for
BS12715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2653147..2653237 | 17..107 | 100 | -> | Plus |
arm_2L | 2653289..2653832 | 108..651 | 100 | | Plus |
BS12715.pep Sequence
Translation from 16 to 663
> BS12715.pep
METILGVKGTDFIILASDTMRNKSAMWLDDEVRKTHRISDYCMMSTAGDG
GDCLKFSDFILRNMDLYKITNGYDLTVRGAVHFIRRHLSAYLKSDCTFQV
SLLVGGYDLTSGPELHYIDYLGNSVPVRYGGHGAAMNFCTPILEEFYKPD
MDTQAAYDVIKKCVIELYKRFVINLRNIDLFLISKNGITKMNSINLESLR
GDILAGPKRRILNTK*
BS12715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-PA | 215 | CG17301-PA | 1..215 | 1..215 | 1128 | 100 | Plus |
Prosbeta4R2-PB | 210 | CG17302-PB | 3..207 | 1..205 | 525 | 43.9 | Plus |
Prosbeta4R2-PA | 210 | CG17302-PA | 3..207 | 1..205 | 525 | 43.9 | Plus |
Prosbeta4-PB | 201 | CG17331-PB | 1..199 | 1..199 | 489 | 43.2 | Plus |
Prosbeta4-PA | 201 | CG17331-PA | 1..199 | 1..199 | 489 | 43.2 | Plus |