Clone BS12715 Report

Search the DGRC for BS12715

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta4R1-RA
Protein status:BS12715.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12715.3prime Sequence

680 bp (680 high quality bases) assembled on 2006-10-13

> BS12715.3prime
ATGGTCTAGAAAGCTTTTATTTTGTGTTTAATATCCTTCGCTTGGGACCA
GCTAAGATATCCCCTCTAAGGGACTCCAGGTTGATGCTATTCATCTTTGT
TATGCCATTTTTGCTTATCAGGAACAAATCTATGTTGCGCAAGTTGATAA
CGAATCGTTTATACAGCTCAATCACACACTTTTTGATAACATCATAGGCT
GCCTGCGTATCCATGTCCGGTTTGTAGAACTCCTCGAGAATGGGAGTGCA
GAAGTTCATGGCGGCTCCGTGGCCACCGTACCGAACGGGAACCGAGTTAC
CCAAATAATCGATGTAGTGCAACTCGGGACCGCTGGTCAAATCGTATCCG
CCCACCAACAGCGACACCTGGAACGTGCAATCGCTCTTCAAATAGGCGGA
CAAATGCCTCCGGATGAAGTGCACCGCTCCGCGAACGGTTAAGTCGTATC
CGTTGGTTATCTTGTAAAGATCCATGTTCCGGAGGATGAAATCCGAGAAC
TTCAGGCAGTCTCCACCGTCCCCAGCGGTCGACAATCATGCAGTAGTCCG
AGATGCGGTGAGTCTTTCTGACCTCGTCATCCAGCCACATCGCCGACTTG
TTCCTCATGGTATCCGAGGCCAGTATGATGAAAATCAGTTCCTTTAACAC
CCAAAATGGTTTCCATGTCGACTGATAACT

BS12715.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17301-PA 648 CG17301-RA 131..648 534..17 2590 100 Minus
CG17301-PA 648 CG17301-RA 33..131 633..535 495 100 Minus
CG17301-PA 648 CG17301-RA 1..35 666..632 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-RA 830 CG17301-RA 102..749 666..17 3200 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2653288..2653845 575..17 2745 99.8 Minus
2L 23513712 2L 2653147..2653237 666..575 410 98.9 Minus
Blast to na_te.dros performed on 2015-02-11 09:11:08 has no hits.

BS12715.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:40 Download gff for BS12715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17301-PA 1..648 17..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:48 Download gff for BS12715.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..749 17..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:00 Download gff for BS12715.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..749 17..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:00 Download gff for BS12715.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2653147..2653237 575..666 98 -> Minus
2L 2653289..2653845 17..574 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:48 Download gff for BS12715.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2653147..2653237 575..666 98 -> Minus
arm_2L 2653289..2653845 17..574 99   Minus

BS12715.5prime Sequence

590 bp (511 high quality bases) assembled on 2006-10-13

> BS12715.5prime
GAAGTTATCAGTCGACATGGAAACCATTTTGGGTGTTAAAGGAACTGATT
TCATCATACTGGCCTCGGATACCATGAGGAACAAGTCGGCGATGTGGCTG
GATGACGAGGTCAGAAAGACTCACCGCATCTCGGACTACTGCATGATGTC
GACCGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCC
GGAACATGGATCTTTACAAGATAACCAACGGATACGACTTAACCGTTCGC
GGAGCGGTGCACTTCATCCGGAGGCATTTGTCCGCCTATTTGAAGAGCGA
TTGCACGTTCCAGGTGTCGCTGTTGGTGGGCGGATACGATTTGACCAGCG
GTCCCGAGTTGCACTACATCGATTATTTGGGTAACTCGGTTCCCGTTCGG
TACGGTGGCCACGGAGCCGCCATGAAACTTCTGCACTCCCATTCTCGAGG
AGTTCTACAAACCGGACATGGATACGCAGGCAGCCTATGATGTTATCAAA
AAGTGTGTGATTGAACTGTATAAACGATTCGTTATCAACTTGCGCAACAT
AGATTTGTTCCTGATAAGCAAAAATGGCATAACAAAGATG

BS12715.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17301-PA 648 CG17301-RA 1..410 17..426 2050 100 Plus
CG17301-PA 648 CG17301-RA 409..573 426..590 800 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-RA 830 CG17301-RA 102..674 17..590 2830 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2653288..2653770 107..590 2355 99.6 Plus
2L 23513712 2L 2653147..2653237 17..107 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:23:47 has no hits.

BS12715.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:41 Download gff for BS12715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17301-PA 1..573 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:26 Download gff for BS12715.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..674 17..590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:33 Download gff for BS12715.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..674 17..590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:33 Download gff for BS12715.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2653147..2653237 17..107 100 -> Plus
2L 2653289..2653770 108..590 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:26 Download gff for BS12715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2653147..2653237 17..107 100 -> Plus
arm_2L 2653289..2653770 108..590 99   Plus

BS12715.complete Sequence

680 bp assembled on 2006-11-01

GenBank Submission: FJ637279

> BS12715.complete
GAAGTTATCAGTCGACATGGAAACCATTTTGGGTGTTAAAGGAACTGATT
TCATCATACTGGCCTCGGATACCATGAGGAACAAGTCGGCGATGTGGCTG
GATGACGAGGTCAGAAAGACTCACCGCATCTCGGACTACTGCATGATGTC
GACCGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCC
GGAACATGGATCTTTACAAGATAACCAACGGATACGACTTAACCGTTCGC
GGAGCGGTGCACTTCATCCGGAGGCATTTGTCCGCCTATTTGAAGAGCGA
TTGCACGTTCCAGGTGTCGCTGTTGGTGGGCGGATACGATTTGACCAGCG
GTCCCGAGTTGCACTACATCGATTATTTGGGTAACTCGGTTCCCGTTCGG
TACGGTGGCCACGGAGCCGCCATGAACTTCTGCACTCCCATTCTCGAGGA
GTTCTACAAACCGGACATGGATACGCAGGCAGCCTATGATGTTATCAAAA
AGTGTGTGATTGAGCTGTATAAACGATTCGTTATCAACTTGCGCAACATA
GATTTGTTCCTGATAAGCAAAAATGGCATAACAAAGATGAATAGCATCAA
CCTGGAGTCCCTTAGAGGGGATATCTTAGCTGGTCCCAAGCGAAGGATAT
TAAACACAAAATAAAAGCTTTCTAGACCAT

BS12715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-RA 648 CG17301-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-RA 830 CG17301-RA 102..749 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2653288..2653845 107..664 2790 100 Plus
2L 23513712 2L 2653147..2653237 17..107 455 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:45:33 has no hits.

BS12715.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:16 Download gff for BS12715.complete
Subject Subject Range Query Range Percent Splice Strand
CG17301-RA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:42 Download gff for BS12715.complete
Subject Subject Range Query Range Percent Splice Strand
CG17301-RA 36..683 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:44 Download gff for BS12715.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..736 17..651 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:16 Download gff for BS12715.complete
Subject Subject Range Query Range Percent Splice Strand
CG17301-RA 36..683 17..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:55 Download gff for BS12715.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..736 17..651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:55 Download gff for BS12715.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2653147..2653237 17..107 100 -> Plus
2L 2653289..2653832 108..651 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:44 Download gff for BS12715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2653147..2653237 17..107 100 -> Plus
arm_2L 2653289..2653832 108..651 100   Plus

BS12715.pep Sequence

Translation from 16 to 663

> BS12715.pep
METILGVKGTDFIILASDTMRNKSAMWLDDEVRKTHRISDYCMMSTAGDG
GDCLKFSDFILRNMDLYKITNGYDLTVRGAVHFIRRHLSAYLKSDCTFQV
SLLVGGYDLTSGPELHYIDYLGNSVPVRYGGHGAAMNFCTPILEEFYKPD
MDTQAAYDVIKKCVIELYKRFVINLRNIDLFLISKNGITKMNSINLESLR
GDILAGPKRRILNTK*

BS12715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-PA 215 CG17301-PA 1..215 1..215 1128 100 Plus
Prosbeta4R2-PB 210 CG17302-PB 3..207 1..205 525 43.9 Plus
Prosbeta4R2-PA 210 CG17302-PA 3..207 1..205 525 43.9 Plus
Prosbeta4-PB 201 CG17331-PB 1..199 1..199 489 43.2 Plus
Prosbeta4-PA 201 CG17331-PA 1..199 1..199 489 43.2 Plus