Clone BS12718 Report

Search the DGRC for BS12718

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG18469-RA
Protein status:BS12718.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12718.3prime Sequence

417 bp (417 high quality bases) assembled on 2006-10-13

> BS12718.3prime
ATGGTCTAGAAAGCTTCTATTGCGGCACTCGGACTAACCGATCATTATCA
GTAGCTTCAATTCTATTACGATTCACATCTGTATCTGTAGACTCGTCAGA
ATCGCCTTCCTCGCCATCGGTATCACTCTCTGCCTCAGAGCCAGATTCAT
TGTCCTGCCAGGGATTAGACTTCCAAAATCTTTGCTTCTGGAGGCGCAAC
TGTTTGGCCAACCGGAGCACACGCAACTTGACCCAAATGACTCTGGTGGC
ATAGACGGCAACTCCGGCTGCCGTCAACCATGGGTGTTGCATCATCATCC
GGGCTCCGGAAGTTGTGGCGTCCGCATCGCGAGGCGTGGTATCGGGAACT
GGCACGGCAGCAACCCCTTCAGAATCTGTGTCCTCAGATGCGGACTCACT
CATGTCGACTGATAACT

BS12718.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-PA 387 CG18469-RA 1..387 403..17 1935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-RA 509 CG18469-RA 7..395 405..17 1945 100 Minus
CG12699-RB 766 CG12699-RB 164..268 304..200 225 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17245883..17246271 17..405 1945 100 Plus
2R 25286936 2R 17247028..17247132 200..304 225 81 Plus
Blast to na_te.dros performed on 2015-02-06 10:28:12 has no hits.

BS12718.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:43 Download gff for BS12718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-PA 1..387 17..403 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:58 Download gff for BS12718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..401 9..410 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:39 Download gff for BS12718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..401 9..410 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:39 Download gff for BS12718.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17245877..17246276 9..413 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:58 Download gff for BS12718.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13133382..13133781 9..413 98   Plus

BS12718.5prime Sequence

417 bp (417 high quality bases) assembled on 2006-10-13

> BS12718.5prime
GAAGTTATCAGTCGACATGAGTGAGTCCGCATCTGAGGACACAGATTCTG
AAGGGGTTGCTGCCGTGCCAGTTCCCGATACCACGCCTCGCGATGCGGAC
GCCACAACTTCCGGAGCCCGGATGATGATGCAACACCCATGGTTGACGGC
AGCCGGAGTTGCCGTCTATGCCACCAGAGTCATTTGGGTCAAGTTGCGTG
TGCTCCGGTTGGCCAAACAGTTGCGCCTCCAGAAGCAAAGATTTTGGAAG
TCTAATCCCTGGCAGGACAATGAATCTGGCTCTGAGGCAGAGAGTGATAC
CGATGGCGAGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATC
GTAATAGAATTGAAGCTACTGATAATGATCGGTTAGTCCGAGTGCCGCAA
TAGAAGCTTTCTAGACC

BS12718.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-PA 387 CG18469-RA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-RA 509 CG18469-RA 7..395 15..403 1945 100 Plus
CG12699-RB 766 CG12699-RB 164..268 116..220 225 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17245883..17246271 403..15 1945 100 Minus
2R 25286936 2R 17247028..17247132 220..116 225 81 Minus
Blast to na_te.dros performed on 2015-02-10 21:30:56 has no hits.

BS12718.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:43 Download gff for BS12718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-PA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:31 Download gff for BS12718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..401 10..411 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:37 Download gff for BS12718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..401 10..411 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:37 Download gff for BS12718.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17245877..17246276 7..411 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:31 Download gff for BS12718.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13133382..13133781 7..411 98   Minus

BS12718.complete Sequence

419 bp assembled on 2006-11-01

GenBank Submission: FJ637280

> BS12718.complete
GAAGTTATCAGTCGACATGAGTGAGTCCGCATCTGAGGACACAGATTCTG
AAGGGGTTGCTGCCGTGCCAGTTCCCGATACCACGCCTCGCGATGCGGAC
GCCACAACTTCCGGAGCCCGGATGATGATGCAACACCCATGGTTGACGGC
AGCCGGAGTTGCCGTCTATGCCACCAGAGTCATTTGGGTCAAGTTGCGTG
TGCTCCGGTTGGCCAAACAGTTGCGCCTCCAGAAGCAAAGATTTTGGAAG
TCTAATCCCTGGCAGGACAATGAATCTGGCTCTGAGGCAGAGAGTGATAC
CGATGGCGAGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATC
GTAATAGAATTGAAGCTACTGATAATGATCGGTTAGTCCGAGTGCCGCAA
TAGAAGCTTTCTAGACCAT

BS12718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-RA 387 CG18469-PA 1..387 17..403 1935 100 Plus
CG12699-RB 438 CG12699-PB 91..195 116..220 225 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-RA 509 CG18469-RA 7..395 15..403 1945 100 Plus
CG12699-RB 766 CG12699-RB 164..268 116..220 225 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17245883..17246271 403..15 1945 100 Minus
2R 25286936 2R 17247028..17247132 220..116 225 81 Minus
Blast to na_te.dros performed on 2014-11-27 08:07:27 has no hits.

BS12718.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:38 Download gff for BS12718.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:12 Download gff for BS12718.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..401 10..411 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:11 Download gff for BS12718.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 9..395 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:39 Download gff for BS12718.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..401 10..411 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:28 Download gff for BS12718.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 9..395 17..403 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:28 Download gff for BS12718.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17245883..17246269 17..403 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:11 Download gff for BS12718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13133388..13133774 17..403 100   Minus

BS12718.pep Sequence

Translation from 16 to 402

> BS12718.pep
MSESASEDTDSEGVAAVPVPDTTPRDADATTSGARMMMQHPWLTAAGVAV
YATRVIWVKLRVLRLAKQLRLQKQRFWKSNPWQDNESGSEAESDTDGEEG
DSDESTDTDVNRNRIEATDNDRLVRVPQ*

BS12718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-PA 128 CG18469-PA 1..128 1..128 663 100 Plus
CG12699-PB 145 CG12699-PB 1..119 1..116 229 45.9 Plus