Clone Sequence Records
BS12718.3prime Sequence
417 bp (417 high quality bases) assembled on 2006-10-13
> BS12718.3prime
ATGGTCTAGAAAGCTTCTATTGCGGCACTCGGACTAACCGATCATTATCA
GTAGCTTCAATTCTATTACGATTCACATCTGTATCTGTAGACTCGTCAGA
ATCGCCTTCCTCGCCATCGGTATCACTCTCTGCCTCAGAGCCAGATTCAT
TGTCCTGCCAGGGATTAGACTTCCAAAATCTTTGCTTCTGGAGGCGCAAC
TGTTTGGCCAACCGGAGCACACGCAACTTGACCCAAATGACTCTGGTGGC
ATAGACGGCAACTCCGGCTGCCGTCAACCATGGGTGTTGCATCATCATCC
GGGCTCCGGAAGTTGTGGCGTCCGCATCGCGAGGCGTGGTATCGGGAACT
GGCACGGCAGCAACCCCTTCAGAATCTGTGTCCTCAGATGCGGACTCACT
CATGTCGACTGATAACT
BS12718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-PA | 387 | CG18469-RA | 1..387 | 403..17 | 1935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-RA | 509 | CG18469-RA | 7..395 | 405..17 | 1945 | 100 | Minus |
CG12699-RB | 766 | CG12699-RB | 164..268 | 304..200 | 225 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17245883..17246271 | 17..405 | 1945 | 100 | Plus |
2R | 25286936 | 2R | 17247028..17247132 | 200..304 | 225 | 81 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:28:12 has no hits.
BS12718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:43 Download gff for
BS12718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-PA | 1..387 | 17..403 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:58 Download gff for
BS12718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..401 | 9..410 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:39 Download gff for
BS12718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..401 | 9..410 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:39 Download gff for
BS12718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17245877..17246276 | 9..413 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:58 Download gff for
BS12718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13133382..13133781 | 9..413 | 98 | | Plus |
BS12718.5prime Sequence
417 bp (417 high quality bases) assembled on 2006-10-13
> BS12718.5prime
GAAGTTATCAGTCGACATGAGTGAGTCCGCATCTGAGGACACAGATTCTG
AAGGGGTTGCTGCCGTGCCAGTTCCCGATACCACGCCTCGCGATGCGGAC
GCCACAACTTCCGGAGCCCGGATGATGATGCAACACCCATGGTTGACGGC
AGCCGGAGTTGCCGTCTATGCCACCAGAGTCATTTGGGTCAAGTTGCGTG
TGCTCCGGTTGGCCAAACAGTTGCGCCTCCAGAAGCAAAGATTTTGGAAG
TCTAATCCCTGGCAGGACAATGAATCTGGCTCTGAGGCAGAGAGTGATAC
CGATGGCGAGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATC
GTAATAGAATTGAAGCTACTGATAATGATCGGTTAGTCCGAGTGCCGCAA
TAGAAGCTTTCTAGACC
BS12718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-PA | 387 | CG18469-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-RA | 509 | CG18469-RA | 7..395 | 15..403 | 1945 | 100 | Plus |
CG12699-RB | 766 | CG12699-RB | 164..268 | 116..220 | 225 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17245883..17246271 | 403..15 | 1945 | 100 | Minus |
2R | 25286936 | 2R | 17247028..17247132 | 220..116 | 225 | 81 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:30:56 has no hits.
BS12718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:43 Download gff for
BS12718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-PA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:31 Download gff for
BS12718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..401 | 10..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:37 Download gff for
BS12718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..401 | 10..411 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:37 Download gff for
BS12718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17245877..17246276 | 7..411 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:31 Download gff for
BS12718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13133382..13133781 | 7..411 | 98 | | Minus |
BS12718.complete Sequence
419 bp assembled on 2006-11-01
GenBank Submission: FJ637280
> BS12718.complete
GAAGTTATCAGTCGACATGAGTGAGTCCGCATCTGAGGACACAGATTCTG
AAGGGGTTGCTGCCGTGCCAGTTCCCGATACCACGCCTCGCGATGCGGAC
GCCACAACTTCCGGAGCCCGGATGATGATGCAACACCCATGGTTGACGGC
AGCCGGAGTTGCCGTCTATGCCACCAGAGTCATTTGGGTCAAGTTGCGTG
TGCTCCGGTTGGCCAAACAGTTGCGCCTCCAGAAGCAAAGATTTTGGAAG
TCTAATCCCTGGCAGGACAATGAATCTGGCTCTGAGGCAGAGAGTGATAC
CGATGGCGAGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATC
GTAATAGAATTGAAGCTACTGATAATGATCGGTTAGTCCGAGTGCCGCAA
TAGAAGCTTTCTAGACCAT
BS12718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-RA | 387 | CG18469-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
CG12699-RB | 438 | CG12699-PB | 91..195 | 116..220 | 225 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-RA | 509 | CG18469-RA | 7..395 | 15..403 | 1945 | 100 | Plus |
CG12699-RB | 766 | CG12699-RB | 164..268 | 116..220 | 225 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17245883..17246271 | 403..15 | 1945 | 100 | Minus |
2R | 25286936 | 2R | 17247028..17247132 | 220..116 | 225 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:07:27 has no hits.
BS12718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:38 Download gff for
BS12718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:12 Download gff for
BS12718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..401 | 10..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:11 Download gff for
BS12718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 9..395 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:39 Download gff for
BS12718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..401 | 10..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:28 Download gff for
BS12718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 9..395 | 17..403 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:28 Download gff for
BS12718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17245883..17246269 | 17..403 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:11 Download gff for
BS12718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13133388..13133774 | 17..403 | 100 | | Minus |
BS12718.pep Sequence
Translation from 16 to 402
> BS12718.pep
MSESASEDTDSEGVAAVPVPDTTPRDADATTSGARMMMQHPWLTAAGVAV
YATRVIWVKLRVLRLAKQLRLQKQRFWKSNPWQDNESGSEAESDTDGEEG
DSDESTDTDVNRNRIEATDNDRLVRVPQ*
BS12718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-PA | 128 | CG18469-PA | 1..128 | 1..128 | 663 | 100 | Plus |
CG12699-PB | 145 | CG12699-PB | 1..119 | 1..116 | 229 | 45.9 | Plus |