Clone BS12726 Report

Search the DGRC for BS12726

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG9920-RA
Protein status:BS12726.pep: full length peptide match
Sequenced Size:412

Clone Sequence Records

BS12726.complete Sequence

412 bp assembled on 2009-08-24

GenBank Submission: KX800870

> BS12726.complete
GAAGTTATCAGTCGACATGTCCAACGTTATTAAGAAGGTGATTCCCATGC
TGGACCGCATTCTAATCCAGCGTTTCGAGGTGAAGACCACCACCGCGGGC
GGCATCCTGCTGCCCGAGGAGTCGGTGCCCAAGGAGATGCAGGGCGTGGT
GGTTGCCGTCGGACCCGGAGCCCGCAATCCTGCTGGAGCTGGACACTTGT
CCGTTGGCGTCAAGGAGGGCGATCGCGTGCTGTTGCCCAAATACGGTGGA
ACTAAGGTCGATATGGACGACAAGCGCGAGTATGTTCTGTTCCGCGAGAG
CGATATCCTTGCTAAACTGGAATAGAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGAAAAGAGGGGAAGTGGTCAATAATCGATAATTCTATAAATCGA
TTAAATTCCTAA

BS12726.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-RA 309 CG9920-PA 1..309 17..325 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-RA 714 CG9920-RA 102..411 17..326 1550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14097596..14097905 326..17 1550 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:32:17 has no hits.

BS12726.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:45 Download gff for BS12726.complete
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 17..332 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:28 Download gff for BS12726.complete
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 17..332 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:58 Download gff for BS12726.complete
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 17..332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:58 Download gff for BS12726.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14097596..14097905 17..326 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:28 Download gff for BS12726.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9923318..9923627 17..326 100   Minus

BS12726.pep Sequence

Translation from 16 to 324

> BS12726.pep
MSNVIKKVIPMLDRILIQRFEVKTTTAGGILLPEESVPKEMQGVVVAVGP
GARNPAGAGHLSVGVKEGDRVLLPKYGGTKVDMDDKREYVLFRESDILAK
LE*

BS12726.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-PA 102 CG9920-PA 1..102 1..102 511 100 Plus
CG11267-PA 103 CG11267-PA 1..103 1..102 333 64.1 Plus