Clone Sequence Records
BS12731.3prime Sequence
747 bp (730 high quality bases) assembled on 2006-10-13
> BS12731.3prime
ATGGTCTAGAAAGCTTTTACTCGGCTTCTTCTACAGGCGCCTTTTGGGTG
TCCCCGCCCCCAGCTGCTCCTGCCTCGGCCTCGTCCTCCGGTTGCTCCGA
CTCATCGTCATCGTCGTTATGGTAAAGAACCTTGCGTATATAGCGGGCCA
CCAGCTCCTGTGGTCTCTTCTCCCATTTGGACAAAACATCATGTGGCGTT
TTGATTTGATCCCCATTTAGGCGATTCAGGATGGCCACACAGACGACCGC
GCCCCTGATGTTGGCCCTACTGGTGAGGGCGGCAAAGGCCAAGCTCTCCA
TCTCGATATTCTTCACCTGCTGGCTCTGCAGCGTCTCCAAGTAGGATTTC
TTCATTTCGGGCGTGTACTCGCAGAAGGCTCCATCGAGGCGCGACTGGCC
TTCGTAGAAGTCATGGGCACACAGAGTCCGGCCGATGACAGCTTCATATT
TGTCCTTGCAGGGATCGTGGCACATCTTGATTTCATCGGCCAGACTCTCA
TCGAGCTGGCTGGCATGCTGGACACTGACGCCGTGCACAAGGATCTCGTG
GACGGGATTCAAGCGACCATCAATCGCCTCGGAGGAAATGATCACGGTGC
CGGGTTCAACGCCAATGCCGCCGCTGGTGCCAATTCTGATGAAGACGGGG
TCCTTGCACTTGGCGTGGTACATCATCTTGATGAGTTCGTGCAGCAGTAT
GGAGATCGACGGACAACCCATTCCGTGGCTGGCGCAAAGCACGGGAC
BS12731.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-PA | 1137 | CG3788-RA | 407..1137 | 747..17 | 3630 | 99.8 | Minus |
CG6330-PB | 1044 | CG6330-RB | 388..434 | 682..636 | 185 | 95.7 | Minus |
CG6330-PA | 1107 | CG6330-RA | 451..497 | 682..636 | 185 | 95.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-RB | 1758 | CG3788-RB | 945..1675 | 747..17 | 3640 | 99.9 | Minus |
CG3788-RA | 1296 | CG3788-RA | 483..1213 | 747..17 | 3640 | 99.9 | Minus |
CG6330-RA | 1541 | CG6330-RA | 523..677 | 742..588 | 310 | 80 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22932364..22932905 | 206..747 | 2695 | 99.8 | Plus |
2R | 25286936 | 2R | 22932118..22932306 | 17..205 | 945 | 100 | Plus |
3R | 32079331 | 3R | 26951118..26951272 | 588..742 | 310 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:05:16 has no hits.
BS12731.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:51 Download gff for
BS12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-PA | 407..1137 | 17..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:14 Download gff for
BS12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 483..1223 | 9..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:16 Download gff for
BS12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 483..1223 | 9..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:16 Download gff for
BS12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22932108..22932306 | 9..205 | 98 | <- | Plus |
2R | 22932364..22932905 | 206..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:14 Download gff for
BS12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18819631..18819829 | 9..205 | 98 | <- | Plus |
arm_2R | 18819887..18820428 | 206..747 | 99 | | Plus |
BS12731.5prime Sequence
738 bp (667 high quality bases) assembled on 2006-10-13
> BS12731.5prime
GAAGTTATCAGTCGACATGTCCAAAAGCAACTGCAGTGACTGCACATGCC
GTTTGGCCAACGAGGTGGGCCAGCTAAAGGCCATCGTGAATGCCCAGAGC
AGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGA
CGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGT
GCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACG
GACTTTCCCAAGGTTTTTGGTGATGTGAGGTTTGTATGCATGGGAGGTAC
TCCGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGGC
TGAAGATAAACGCGGCTACCAAGCTACGGAACATATCGGAGGCCGGCCAG
CGATTCTCCTTGTTCAAGGTGGGTCCCGTGCTCTGCGCCAGCCACGGAAT
GGGTTGTCCGTCGATCTCCATACTGCTGCACGAACTCATCAAGATGATGT
ACCACGCCAAGTGCAAGGACCCCGTCTTCATCAGAATTGGCACCAGCGGC
GGCATTGGCGTTGAACCCGGCACCGTGATCATTTCCTCCGAGGCGATTGA
TGGTCGCTTGAATCCCGTCCACGAGATCCTTGTGCACGGCGTCAGTGTCC
AGCATGCCAGCCAGCTCGATGAGAGTCTGGCCGATGAAATCAAGATGTGC
CACGATCCCTGCAAGGACAAATATGAAGCTGTCATCCG
BS12731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-PA | 1137 | CG3788-RA | 1..720 | 17..736 | 3575 | 99.8 | Plus |
CG6330-PB | 1044 | CG6330-RB | 388..434 | 488..534 | 185 | 95.7 | Plus |
CG6330-PA | 1107 | CG6330-RA | 451..497 | 488..534 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-RB | 1758 | CG3788-RB | 539..1258 | 17..736 | 3585 | 99.9 | Plus |
CG3788-RA | 1296 | CG3788-RA | 77..796 | 17..736 | 3585 | 99.9 | Plus |
CG6330-RA | 1541 | CG6330-RA | 501..677 | 406..582 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22932592..22933048 | 736..280 | 2270 | 99.8 | Minus |
2R | 25286936 | 2R | 22933119..22933319 | 280..80 | 1005 | 100 | Minus |
3R | 32079331 | 3R | 26951118..26951294 | 582..406 | 345 | 79.7 | Minus |
2R | 25286936 | 2R | 22933384..22933447 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:57:52 has no hits.
BS12731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:52 Download gff for
BS12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-PA | 1..721 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:36 Download gff for
BS12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..797 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:05 Download gff for
BS12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..797 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:05 Download gff for
BS12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22932590..22933047 | 281..738 | 99 | <- | Minus |
2R | 22933119..22933318 | 81..280 | 100 | <- | Minus |
2R | 22933384..22933447 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:36 Download gff for
BS12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18820113..18820570 | 281..738 | 99 | <- | Minus |
arm_2R | 18820642..18820841 | 81..280 | 100 | <- | Minus |
arm_2R | 18820907..18820970 | 17..80 | 100 | | Minus |
BS12731.complete Sequence
1169 bp assembled on 2006-11-01
GenBank Submission: FJ637281
> BS12731.complete
GAAGTTATCAGTCGACATGTCCAAAAGCAACTGCAGTGACTGCACATGCC
GTTTGGCCAACGAGGTGGGCCAGCTAAAGGCCATCGTGAATGCCCAGAGC
AGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGA
CGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGT
GCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACG
GACTTTCCCAAGGTTTTTGGTGATGTGAGGTTTGTATGCATGGGAGGTAC
TCCGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGGC
TGAAGATAAACGCGGCTACCAAGCTACGGAACATATCGGAGGCCGGCCAG
CGATTCTCCTTGTTCAAGGTGGGTCCCGTGCTCTGCGCCAGCCACGGAAT
GGGTTGTCCGTCGATCTCCATACTGCTGCACGAACTCATCAAGATGATGT
ACCACGCCAAGTGCAAGGACCCCGTCTTCATCAGAATTGGCACCAGCGGC
GGCATTGGCGTTGAACCCGGCACCGTGATCATTTCCTCCGAGGCGATTGA
TGGTCGCTTGAATCCCGTCCACGAGATCCTTGTGCACGGCGTCAGTGTCC
AGCATGCCAGCCAGCTCGATGAGAGTCTGGCCGATGAAATCAAGATGTGC
CACGATCCCTGCAAGGACAAATATGAAGCTGTCATCGGCCGGACTCTGTG
TGCCCATGACTTCTACGAAGGCCAGTCGCGCCTCGATGGAGCCTTCTGCG
AGTACACGCCCGAAATGAAGAAATCCTACTTGGAGACGCTGCAGAGCCAG
CAGGTGAAGAATATCGAGATGGAGAGCTTGGCCTTTGCCGCCCTCACCAG
TAGGGCCAACATCAGGGGCGCGGTCGTCTGTGTGGCCATCCTGAATCGCC
TAAATGGGGATCAAATCAAAACGCCACATGATGTTTTGTCCAAATGGGAG
AAGAGACCACAGGAGCTGGTGGCCCGCTATATACGCAAGGTTCTTTACCA
TAACGACGATGACGATGAGTCGGAGCAACCGGAGGACGAGGCCGAGGCAG
GAGCAGCTGGGGGCGGGGACACCCAAAAGGCGCCTGTAGAAGAAGCCGAG
TAAAAGCTTTCTAGACCAT
BS12731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-RB | 1137 | CG3788-PB | 1..1137 | 17..1153 | 5670 | 99.9 | Plus |
CG3788-RA | 1137 | CG3788-PA | 1..1137 | 17..1153 | 5670 | 99.9 | Plus |
CG6330-RA | 1107 | CG6330-PA | 369..545 | 406..582 | 345 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-RB | 1758 | CG3788-RB | 539..1675 | 17..1153 | 5670 | 99.9 | Plus |
CG3788-RA | 1296 | CG3788-RA | 77..1213 | 17..1153 | 5670 | 99.9 | Plus |
CG6330-RA | 1541 | CG6330-RA | 501..677 | 406..582 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22932364..22933048 | 964..280 | 3410 | 99.9 | Minus |
2R | 25286936 | 2R | 22933119..22933319 | 280..80 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 22932118..22932306 | 1153..965 | 945 | 100 | Minus |
3R | 32079331 | 3R | 26951118..26951294 | 582..406 | 345 | 79.7 | Minus |
2R | 25286936 | 2R | 22933384..22933447 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:35:28 has no hits.
BS12731.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:20 Download gff for
BS12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 1..1137 | 17..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:37 Download gff for
BS12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..1223 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:23 Download gff for
BS12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..1211 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:20 Download gff for
BS12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..1223 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:38 Download gff for
BS12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..1211 | 17..1151 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:38 Download gff for
BS12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22932120..22932306 | 965..1151 | 100 | <- | Minus |
2R | 22932364..22933047 | 281..964 | 99 | <- | Minus |
2R | 22933119..22933318 | 81..280 | 100 | <- | Minus |
2R | 22933384..22933447 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:23 Download gff for
BS12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18819643..18819829 | 965..1151 | 100 | <- | Minus |
arm_2R | 18819887..18820570 | 281..964 | 99 | <- | Minus |
arm_2R | 18820642..18820841 | 81..280 | 100 | <- | Minus |
arm_2R | 18820907..18820970 | 17..80 | 100 | | Minus |
BS12731.pep Sequence
Translation from 16 to 1152
> BS12731.pep
MSKSNCSDCTCRLANEVGQLKAIVNAQSRTLAKLVRQMKEGCKKDEEAKE
STLCGLNPCLKCLQPDILYHLGLNTETTDFPKVFGDVRFVCMGGTPGRME
NFAYYVMQEIGLKINAATKLRNISEAGQRFSLFKVGPVLCASHGMGCPSI
SILLHELIKMMYHAKCKDPVFIRIGTSGGIGVEPGTVIISSEAIDGRLNP
VHEILVHGVSVQHASQLDESLADEIKMCHDPCKDKYEAVIGRTLCAHDFY
EGQSRLDGAFCEYTPEMKKSYLETLQSQQVKNIEMESLAFAALTSRANIR
GAVVCVAILNRLNGDQIKTPHDVLSKWEKRPQELVARYIRKVLYHNDDDD
ESEQPEDEAEAGAAGGGDTQKAPVEEAE*
BS12731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-PB | 378 | CG3788-PB | 1..378 | 1..378 | 1984 | 100 | Plus |
CG3788-PA | 378 | CG3788-PA | 1..378 | 1..378 | 1984 | 100 | Plus |
CG6330-PB | 347 | CG6330-PB | 18..317 | 46..346 | 932 | 57.5 | Plus |
CG6330-PA | 368 | CG6330-PA | 50..338 | 57..346 | 928 | 59 | Plus |
CG17224-PD | 300 | CG17224-PD | 9..298 | 56..343 | 596 | 40.4 | Plus |