Clone BS12731 Report

Search the DGRC for BS12731

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG3788-RA
Protein status:BS12731.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12731.3prime Sequence

747 bp (730 high quality bases) assembled on 2006-10-13

> BS12731.3prime
ATGGTCTAGAAAGCTTTTACTCGGCTTCTTCTACAGGCGCCTTTTGGGTG
TCCCCGCCCCCAGCTGCTCCTGCCTCGGCCTCGTCCTCCGGTTGCTCCGA
CTCATCGTCATCGTCGTTATGGTAAAGAACCTTGCGTATATAGCGGGCCA
CCAGCTCCTGTGGTCTCTTCTCCCATTTGGACAAAACATCATGTGGCGTT
TTGATTTGATCCCCATTTAGGCGATTCAGGATGGCCACACAGACGACCGC
GCCCCTGATGTTGGCCCTACTGGTGAGGGCGGCAAAGGCCAAGCTCTCCA
TCTCGATATTCTTCACCTGCTGGCTCTGCAGCGTCTCCAAGTAGGATTTC
TTCATTTCGGGCGTGTACTCGCAGAAGGCTCCATCGAGGCGCGACTGGCC
TTCGTAGAAGTCATGGGCACACAGAGTCCGGCCGATGACAGCTTCATATT
TGTCCTTGCAGGGATCGTGGCACATCTTGATTTCATCGGCCAGACTCTCA
TCGAGCTGGCTGGCATGCTGGACACTGACGCCGTGCACAAGGATCTCGTG
GACGGGATTCAAGCGACCATCAATCGCCTCGGAGGAAATGATCACGGTGC
CGGGTTCAACGCCAATGCCGCCGCTGGTGCCAATTCTGATGAAGACGGGG
TCCTTGCACTTGGCGTGGTACATCATCTTGATGAGTTCGTGCAGCAGTAT
GGAGATCGACGGACAACCCATTCCGTGGCTGGCGCAAAGCACGGGAC

BS12731.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-PA 1137 CG3788-RA 407..1137 747..17 3630 99.8 Minus
CG6330-PB 1044 CG6330-RB 388..434 682..636 185 95.7 Minus
CG6330-PA 1107 CG6330-RA 451..497 682..636 185 95.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-RB 1758 CG3788-RB 945..1675 747..17 3640 99.9 Minus
CG3788-RA 1296 CG3788-RA 483..1213 747..17 3640 99.9 Minus
CG6330-RA 1541 CG6330-RA 523..677 742..588 310 80 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22932364..22932905 206..747 2695 99.8 Plus
2R 25286936 2R 22932118..22932306 17..205 945 100 Plus
3R 32079331 3R 26951118..26951272 588..742 310 80 Plus
Blast to na_te.dros performed on 2015-02-10 21:05:16 has no hits.

BS12731.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:51 Download gff for BS12731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-PA 407..1137 17..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:14 Download gff for BS12731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 483..1223 9..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:16 Download gff for BS12731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 483..1223 9..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:16 Download gff for BS12731.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22932108..22932306 9..205 98 <- Plus
2R 22932364..22932905 206..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:14 Download gff for BS12731.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18819631..18819829 9..205 98 <- Plus
arm_2R 18819887..18820428 206..747 99   Plus

BS12731.5prime Sequence

738 bp (667 high quality bases) assembled on 2006-10-13

> BS12731.5prime
GAAGTTATCAGTCGACATGTCCAAAAGCAACTGCAGTGACTGCACATGCC
GTTTGGCCAACGAGGTGGGCCAGCTAAAGGCCATCGTGAATGCCCAGAGC
AGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGA
CGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGT
GCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACG
GACTTTCCCAAGGTTTTTGGTGATGTGAGGTTTGTATGCATGGGAGGTAC
TCCGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGGC
TGAAGATAAACGCGGCTACCAAGCTACGGAACATATCGGAGGCCGGCCAG
CGATTCTCCTTGTTCAAGGTGGGTCCCGTGCTCTGCGCCAGCCACGGAAT
GGGTTGTCCGTCGATCTCCATACTGCTGCACGAACTCATCAAGATGATGT
ACCACGCCAAGTGCAAGGACCCCGTCTTCATCAGAATTGGCACCAGCGGC
GGCATTGGCGTTGAACCCGGCACCGTGATCATTTCCTCCGAGGCGATTGA
TGGTCGCTTGAATCCCGTCCACGAGATCCTTGTGCACGGCGTCAGTGTCC
AGCATGCCAGCCAGCTCGATGAGAGTCTGGCCGATGAAATCAAGATGTGC
CACGATCCCTGCAAGGACAAATATGAAGCTGTCATCCG

BS12731.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-PA 1137 CG3788-RA 1..720 17..736 3575 99.8 Plus
CG6330-PB 1044 CG6330-RB 388..434 488..534 185 95.7 Plus
CG6330-PA 1107 CG6330-RA 451..497 488..534 185 95.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-RB 1758 CG3788-RB 539..1258 17..736 3585 99.9 Plus
CG3788-RA 1296 CG3788-RA 77..796 17..736 3585 99.9 Plus
CG6330-RA 1541 CG6330-RA 501..677 406..582 345 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22932592..22933048 736..280 2270 99.8 Minus
2R 25286936 2R 22933119..22933319 280..80 1005 100 Minus
3R 32079331 3R 26951118..26951294 582..406 345 79.7 Minus
2R 25286936 2R 22933384..22933447 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:57:52 has no hits.

BS12731.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:52 Download gff for BS12731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-PA 1..721 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:36 Download gff for BS12731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..797 17..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:05 Download gff for BS12731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..797 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:05 Download gff for BS12731.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22932590..22933047 281..738 99 <- Minus
2R 22933119..22933318 81..280 100 <- Minus
2R 22933384..22933447 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:36 Download gff for BS12731.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18820113..18820570 281..738 99 <- Minus
arm_2R 18820642..18820841 81..280 100 <- Minus
arm_2R 18820907..18820970 17..80 100   Minus

BS12731.complete Sequence

1169 bp assembled on 2006-11-01

GenBank Submission: FJ637281

> BS12731.complete
GAAGTTATCAGTCGACATGTCCAAAAGCAACTGCAGTGACTGCACATGCC
GTTTGGCCAACGAGGTGGGCCAGCTAAAGGCCATCGTGAATGCCCAGAGC
AGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGA
CGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGT
GCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACG
GACTTTCCCAAGGTTTTTGGTGATGTGAGGTTTGTATGCATGGGAGGTAC
TCCGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGGC
TGAAGATAAACGCGGCTACCAAGCTACGGAACATATCGGAGGCCGGCCAG
CGATTCTCCTTGTTCAAGGTGGGTCCCGTGCTCTGCGCCAGCCACGGAAT
GGGTTGTCCGTCGATCTCCATACTGCTGCACGAACTCATCAAGATGATGT
ACCACGCCAAGTGCAAGGACCCCGTCTTCATCAGAATTGGCACCAGCGGC
GGCATTGGCGTTGAACCCGGCACCGTGATCATTTCCTCCGAGGCGATTGA
TGGTCGCTTGAATCCCGTCCACGAGATCCTTGTGCACGGCGTCAGTGTCC
AGCATGCCAGCCAGCTCGATGAGAGTCTGGCCGATGAAATCAAGATGTGC
CACGATCCCTGCAAGGACAAATATGAAGCTGTCATCGGCCGGACTCTGTG
TGCCCATGACTTCTACGAAGGCCAGTCGCGCCTCGATGGAGCCTTCTGCG
AGTACACGCCCGAAATGAAGAAATCCTACTTGGAGACGCTGCAGAGCCAG
CAGGTGAAGAATATCGAGATGGAGAGCTTGGCCTTTGCCGCCCTCACCAG
TAGGGCCAACATCAGGGGCGCGGTCGTCTGTGTGGCCATCCTGAATCGCC
TAAATGGGGATCAAATCAAAACGCCACATGATGTTTTGTCCAAATGGGAG
AAGAGACCACAGGAGCTGGTGGCCCGCTATATACGCAAGGTTCTTTACCA
TAACGACGATGACGATGAGTCGGAGCAACCGGAGGACGAGGCCGAGGCAG
GAGCAGCTGGGGGCGGGGACACCCAAAAGGCGCCTGTAGAAGAAGCCGAG
TAAAAGCTTTCTAGACCAT

BS12731.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-RB 1137 CG3788-PB 1..1137 17..1153 5670 99.9 Plus
CG3788-RA 1137 CG3788-PA 1..1137 17..1153 5670 99.9 Plus
CG6330-RA 1107 CG6330-PA 369..545 406..582 345 79.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-RB 1758 CG3788-RB 539..1675 17..1153 5670 99.9 Plus
CG3788-RA 1296 CG3788-RA 77..1213 17..1153 5670 99.9 Plus
CG6330-RA 1541 CG6330-RA 501..677 406..582 345 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22932364..22933048 964..280 3410 99.9 Minus
2R 25286936 2R 22933119..22933319 280..80 1005 100 Minus
2R 25286936 2R 22932118..22932306 1153..965 945 100 Minus
3R 32079331 3R 26951118..26951294 582..406 345 79.7 Minus
2R 25286936 2R 22933384..22933447 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:35:28 has no hits.

BS12731.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:20 Download gff for BS12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 1..1137 17..1153 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:37 Download gff for BS12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..1223 17..1161 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:23 Download gff for BS12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..1211 17..1151 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:20 Download gff for BS12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..1223 17..1161 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:38 Download gff for BS12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..1211 17..1151 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:38 Download gff for BS12731.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22932120..22932306 965..1151 100 <- Minus
2R 22932364..22933047 281..964 99 <- Minus
2R 22933119..22933318 81..280 100 <- Minus
2R 22933384..22933447 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:23 Download gff for BS12731.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18819643..18819829 965..1151 100 <- Minus
arm_2R 18819887..18820570 281..964 99 <- Minus
arm_2R 18820642..18820841 81..280 100 <- Minus
arm_2R 18820907..18820970 17..80 100   Minus

BS12731.pep Sequence

Translation from 16 to 1152

> BS12731.pep
MSKSNCSDCTCRLANEVGQLKAIVNAQSRTLAKLVRQMKEGCKKDEEAKE
STLCGLNPCLKCLQPDILYHLGLNTETTDFPKVFGDVRFVCMGGTPGRME
NFAYYVMQEIGLKINAATKLRNISEAGQRFSLFKVGPVLCASHGMGCPSI
SILLHELIKMMYHAKCKDPVFIRIGTSGGIGVEPGTVIISSEAIDGRLNP
VHEILVHGVSVQHASQLDESLADEIKMCHDPCKDKYEAVIGRTLCAHDFY
EGQSRLDGAFCEYTPEMKKSYLETLQSQQVKNIEMESLAFAALTSRANIR
GAVVCVAILNRLNGDQIKTPHDVLSKWEKRPQELVARYIRKVLYHNDDDD
ESEQPEDEAEAGAAGGGDTQKAPVEEAE*

BS12731.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-PB 378 CG3788-PB 1..378 1..378 1984 100 Plus
CG3788-PA 378 CG3788-PA 1..378 1..378 1984 100 Plus
CG6330-PB 347 CG6330-PB 18..317 46..346 932 57.5 Plus
CG6330-PA 368 CG6330-PA 50..338 57..346 928 59 Plus
CG17224-PD 300 CG17224-PD 9..298 56..343 596 40.4 Plus