Clone BS12741 Report

Search the DGRC for BS12741

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG30103-RA
Protein status:BS12741.pep: full length peptide match
Sequenced Size:1787

Clone Sequence Records

BS12741.3prime Sequence

775 bp (705 high quality bases) assembled on 2006-10-13

> BS12741.3prime
ATGGTCTAGAAAGCTTCTAGACAACGAGAAATCGGTGACAAAAGTACAAA
AAGCTGAGTATTAAGTTGGGTTCAAGAGACATGTAGCCCGAGTTGGCGAT
GTGCTTATGCTGCACATATTGGCGATCCTCCCGTTCCGGATAGATAACCT
TGTGCTCCTGCAGATACTGGATGACAGCCATGCGATCAAGGATCGTCATA
TTTTCCACTTCCGGTCTCTTTGGATCGACGAAACTGTAGCCCTCTCCGCC
ATTCAATAGAAATGATGTTACTACCACACCGTAGTACCCATTCGTATCAA
CGGCCTCGTAGTGGGGAATCTGGCAATCGGAGCACAGGGCACGGATTTCC
GTGATCCTTTCGCCCTTGGGCAAACTGTGGTTGAACTTGAGCCGAAGACC
CGAAACCTGTAAATGGGCACTGGTCATGTGTTTGCTACGCATTTGGGCGG
AATGCTCCAGCGCCTTCATCAGTTGACTGCCACTGATCCTGGTGTAATAG
AGATCTTGGCTGAAGGGAAGCACTGTGACCACATCAGCTTCCGTAATGGC
GCCCGTTTCGCCGGGATCAATCGACGCTCTAATAGCGCCCGCATTGATGA
GTCCAATGGAAGCATCTGTCCAAGAACTTCTATCCGCCATCGTTTGCACT
ACTCTCGCATACACAAAGCTATCGGCTATGAAGTTTCCAAAATTGCACTC
ACTATAACCACAACTCTTCCGATCGCCTTTCAATAAACGGATGTGGTGCC
CACCACATGGCGCTCCATATCATCG

BS12741.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30103-PA 1755 CG30103-RA 996..1755 775..17 3410 98 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG30103-RA 2022 CG30103-RA 1076..1835 775..17 3565 98 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17495242..17495811 586..17 2655 97.7 Minus
2R 25286936 2R 17494997..17495187 775..586 890 99 Minus
Blast to na_te.dros performed on 2015-02-13 00:51:23 has no hits.

BS12741.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:58 Download gff for BS12741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30103-PA 996..1755 17..775 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:45:18 Download gff for BS12741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30103-RA 1076..1841 9..775 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:16 Download gff for BS12741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30103-RA 1076..1841 9..775 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:16 Download gff for BS12741.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17494997..17495187 586..775 98 -> Minus
2R 17495243..17495817 9..585 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:45:18 Download gff for BS12741.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13382502..13382692 586..775 98 -> Minus
arm_2R 13382748..13383322 9..585 97   Minus

BS12741.5prime Sequence

829 bp (747 high quality bases) assembled on 2006-10-13

> BS12741.5prime
GAAGTTATCAGTCGACATGCATTCACTTACTCCACAATGGTGGTTTTTTC
TCTCGCTGATCCTGTTCTTCCTGGACTGGATCAGTGGTTTCAAATTCACC
CTCTTACACACGAATGACATGCACTCCAGGTTCGACCCCATTTCCGACAC
AGGTGGAAGGTGCAAGACTGTCGACGATGCAATGGGTATTTGCTTCGGGG
GATTTGGACGAGTGGCGGAAGCAGTTTCAGCAGCAAGAAATACTGCAACT
GATCCGGTTATTTACTTAAACGGTGGCGATTCCTTTCAAGGTACTTCCTG
GTTTTCGGTTTATCGAGGAAAAATGGTGGCCCGAATGCTAAATTTTCTGG
CTCCCGACGCCATGGCCCTTGGAGTTCACGAACTTGACGATGGAACAGAT
GCCTTGGCCGAATTTCTAAATACCATTACTTTTCCAATGGTCAGCAGCAA
TATAAACCTGATAAATGAACCTAAACTTGCGGAAAACGCTAATCTAGTGA
CTTCCTTGGTTATCACAAAGGGTAATCGTAAGATCGGCATAGTGGGCTAC
ATAAGACCGGATACCAAGGAGCGAACCCAACCAAGTAATGTGATATTTAA
ACGGGAGGTGCCCGCCATCAATAAGGAAACAAAGAAACTTAAGGGTCAAG
GCATCGATATCATCATTGCTTTGGGACATTCTGGCTACGAGAAAGATATG
GAAATAGCCAAGCGGTGTCCGGACGTGGATATCGTCGTCGGTGGTCAGTC
GCACACGTTTCTCTATTCGGGAAAGGCACCGAGTAAGGAAGTTTCGGAGG
GTCCCTATCCCACAATAATGGTAAAGCCC

BS12741.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30103-PA 1755 CG30103-RA 1..813 17..829 4015 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG30103-RA 2022 CG30103-RA 81..893 17..829 4035 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17494234..17494491 364..621 1290 100 Plus
2R 25286936 2R 17493775..17493980 17..222 1030 100 Plus
2R 25286936 2R 17494551..17494758 622..829 1010 99 Plus
2R 25286936 2R 17494041..17494183 223..365 715 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:55:03 has no hits.

BS12741.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:58 Download gff for BS12741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30103-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:44 Download gff for BS12741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30103-RA 67..893 3..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:58 Download gff for BS12741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30103-RA 67..893 3..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:58 Download gff for BS12741.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17493761..17493980 3..222 97 -> Plus
2R 17494041..17494182 223..364 100 -> Plus
2R 17494235..17494491 365..621 100 -> Plus
2R 17494551..17494758 622..829 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:44 Download gff for BS12741.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13381266..13381485 3..222 97 -> Plus
arm_2R 13381546..13381687 223..364 100 -> Plus
arm_2R 13381740..13381996 365..621 100 -> Plus
arm_2R 13382056..13382263 622..829 99   Plus

BS12741.complete Sequence

1787 bp assembled on 2009-08-26

GenBank Submission: KX802728

> BS12741.complete
GAAGTTATCAGTCGACATGCATTCACTTACTCCACAATGGTGGTTTTTTC
TCTCGCTGATCCTGTTCTTCCTGGACTGGATCAGTGGTTTCAAATTCACC
CTCTTACACACGAATGACATGCACTCCAGGTTCGACCCCATTTCCGACAC
AGGTGGAAGGTGCAAGACTGTCGACGATGCAATGGGTATTTGCTTCGGGG
GATTTGGACGAGTGGCGGAAGCAGTTTCAGCAGCAAGAAATACTGCAACT
GATCCGGTTATTTACTTAAACGGTGGCGATTCCTTTCAAGGTACTTCCTG
GTTTTCGGTTTATCGAGGAAAAATGGTGGCCCGAATGCTAAATTTTCTGG
CTCCCGACGCCATGGCCCTTGGAGTTCACGAACTTGACGATGGAACAGAT
GCCTTGGCCGAATTTCTAAATACCATTACTTTTCCAATGGTCAGCAGCAA
TATAAACCTGATAAATGAACCTAAACTTGCGGAAAACGCTAATCTAGTGA
CTTCCTTGGTTATCACAAAGGGTAATCGTAAGATCGGCATAGTGGGCTAC
ATAAGACCGGATACCAAGGAGCGAACCCAACCAAGTAATGTGATATTTAA
ACGGGAGGTGCCCGCCATCAATAAGGAAACAAAGAAACTTAAGGGTCAAG
GCATCGATATCATCATTGCTTTGGGACATTCTGGCTACGAGAAAGATATG
GAAATAGCCAAGCGGTGTCCGGACGTGGATATCGTCGTCGGTGGTCAGTC
GCACACGTTTCTCTATTCGGGAAAGGCACCGAGTAAGGAAGTTTCGGAAG
GTCCCTATCCCACAATAGTGGTAAAGCCCGATGGCAGGAAAGTGCCCGTT
GTTCAGGCCTATGCTTATACGAAATATTTGGGAAATCTTTCCCTAGAATT
CGACAATGGTGGAAATCTGCTTAGTTTCAAGGGTAGCCCCATTTTATTGA
ATAATCGTTTTCATCCCCGAAAAGATGTTCAAGATTTTCTTCAACTGTAC
CGCCAGGTGATCGATGATATGGAGCGCCATGTGGTGGGCACCACATCCGT
TTATTTGAATGGCGATCGGAAGAGTTGTGGTTATAGTGAGTGCAATTTTG
GAAACTTCATAGCCGATAGCTTTGTGTATGCGAGAGTAGTGCAAACGATG
GCGGATAGAAGTTCTTGGACAGATGCTTCCATTGGACTCATCAATGCGGG
CGCTATTAGAGCGTCGATTGATCCCGGCGAAACGGGCGCCATTACGGAAG
CTGATGTGGTCACAGTGCTTCCCTTCAGCCAAGATCTCTATTACACCAGG
ATCAGTGGCAGTCAACTGATGAAGGCGCTGGAGCATTCCGCCCAAATGCG
TAGCAAACACATGACCAGTGCCCATTTACAGGTTTCGGGTCTTCGGCTCA
AGTTCAACCACAGTTTGCCCAAGGGCGAAAGGATCACGGAAATCCGTGCC
CTGTGCTCCGATTGCCAGATTCCCCACTACGAGGCCGTTGATACGAATGG
GTACTACGGTGTGGTAGTAACATCATTTCTATTGAATGGCGGAGAGGGCT
ACAGTTTCGTCGATCCAAAGAGACCGGAAGTGGAAAATATGACGATCCTT
GATCGCATGGCTGTCATCCAGTATCTGCAGGAGCACAAGGTTATCTATCC
GGAACGGGAGGATCGCCAATATGTGCAGCATAAGCACATCGCCAACTCGG
GCTACATGTCTCTTGAACCCAACTTAATACTCAGCTTTTTGTACTTTTGT
CACCGATTTCTCGTTGTCTAGAAGCTTTCTAGACCAT

BS12741.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30103-RA 1755 CG30103-PA 1..1755 17..1771 8580 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30103-RA 2022 CG30103-RA 81..1835 17..1771 8580 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17495242..17495811 1202..1771 2655 97.7 Plus
2R 25286936 2R 17494884..17495187 899..1202 1520 100 Plus
2R 25286936 2R 17494551..17494827 622..898 1385 100 Plus
2R 25286936 2R 17494234..17494491 364..621 1290 100 Plus
2R 25286936 2R 17493775..17493980 17..222 1030 100 Plus
2R 25286936 2R 17494041..17494183 223..365 715 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:34:50 has no hits.

BS12741.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:24 Download gff for BS12741.complete
Subject Subject Range Query Range Percent Splice Strand
CG30103-RA 14..1768 17..1771 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:40 Download gff for BS12741.complete
Subject Subject Range Query Range Percent Splice Strand
CG30103-RA 81..1835 17..1771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:57 Download gff for BS12741.complete
Subject Subject Range Query Range Percent Splice Strand
CG30103-RA 81..1835 17..1771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:57 Download gff for BS12741.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17494551..17494827 622..898 100 -> Plus
2R 17494884..17495187 899..1202 100 -> Plus
2R 17493775..17493980 17..222 100 -> Plus
2R 17494041..17494182 223..364 100 -> Plus
2R 17494235..17494491 365..621 100 -> Plus
2R 17495243..17495811 1203..1771 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:40 Download gff for BS12741.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13381280..13381485 17..222 100 -> Plus
arm_2R 13381546..13381687 223..364 100 -> Plus
arm_2R 13381740..13381996 365..621 100 -> Plus
arm_2R 13382056..13382332 622..898 100 -> Plus
arm_2R 13382389..13382692 899..1202 100 -> Plus
arm_2R 13382748..13383316 1203..1771 97   Plus

BS12741.pep Sequence

Translation from 16 to 1770

> BS12741.pep
MHSLTPQWWFFLSLILFFLDWISGFKFTLLHTNDMHSRFDPISDTGGRCK
TVDDAMGICFGGFGRVAEAVSAARNTATDPVIYLNGGDSFQGTSWFSVYR
GKMVARMLNFLAPDAMALGVHELDDGTDALAEFLNTITFPMVSSNINLIN
EPKLAENANLVTSLVITKGNRKIGIVGYIRPDTKERTQPSNVIFKREVPA
INKETKKLKGQGIDIIIALGHSGYEKDMEIAKRCPDVDIVVGGQSHTFLY
SGKAPSKEVSEGPYPTIVVKPDGRKVPVVQAYAYTKYLGNLSLEFDNGGN
LLSFKGSPILLNNRFHPRKDVQDFLQLYRQVIDDMERHVVGTTSVYLNGD
RKSCGYSECNFGNFIADSFVYARVVQTMADRSSWTDASIGLINAGAIRAS
IDPGETGAITEADVVTVLPFSQDLYYTRISGSQLMKALEHSAQMRSKHMT
SAHLQVSGLRLKFNHSLPKGERITEIRALCSDCQIPHYEAVDTNGYYGVV
VTSFLLNGGEGYSFVDPKRPEVENMTILDRMAVIQYLQEHKVIYPEREDR
QYVQHKHIANSGYMSLEPNLILSFLYFCHRFLVV*

BS12741.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG30103-PA 584 CG30103-PA 1..584 1..584 3058 100 Plus
veil-PB 599 CG4827-PB 36..573 26..556 1232 43.7 Plus
veil-PA 599 CG4827-PA 36..573 26..556 1232 43.7 Plus
NT5E-2-PA 585 CG30104-PA 32..557 26..550 1230 44.7 Plus
NT5E-2-PB 585 CG30104-PB 32..557 26..550 1230 44.7 Plus