Clone Sequence Records
BS12741.3prime Sequence
775 bp (705 high quality bases) assembled on 2006-10-13
> BS12741.3prime
ATGGTCTAGAAAGCTTCTAGACAACGAGAAATCGGTGACAAAAGTACAAA
AAGCTGAGTATTAAGTTGGGTTCAAGAGACATGTAGCCCGAGTTGGCGAT
GTGCTTATGCTGCACATATTGGCGATCCTCCCGTTCCGGATAGATAACCT
TGTGCTCCTGCAGATACTGGATGACAGCCATGCGATCAAGGATCGTCATA
TTTTCCACTTCCGGTCTCTTTGGATCGACGAAACTGTAGCCCTCTCCGCC
ATTCAATAGAAATGATGTTACTACCACACCGTAGTACCCATTCGTATCAA
CGGCCTCGTAGTGGGGAATCTGGCAATCGGAGCACAGGGCACGGATTTCC
GTGATCCTTTCGCCCTTGGGCAAACTGTGGTTGAACTTGAGCCGAAGACC
CGAAACCTGTAAATGGGCACTGGTCATGTGTTTGCTACGCATTTGGGCGG
AATGCTCCAGCGCCTTCATCAGTTGACTGCCACTGATCCTGGTGTAATAG
AGATCTTGGCTGAAGGGAAGCACTGTGACCACATCAGCTTCCGTAATGGC
GCCCGTTTCGCCGGGATCAATCGACGCTCTAATAGCGCCCGCATTGATGA
GTCCAATGGAAGCATCTGTCCAAGAACTTCTATCCGCCATCGTTTGCACT
ACTCTCGCATACACAAAGCTATCGGCTATGAAGTTTCCAAAATTGCACTC
ACTATAACCACAACTCTTCCGATCGCCTTTCAATAAACGGATGTGGTGCC
CACCACATGGCGCTCCATATCATCG
BS12741.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30103-PA | 1755 | CG30103-RA | 996..1755 | 775..17 | 3410 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30103-RA | 2022 | CG30103-RA | 1076..1835 | 775..17 | 3565 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17495242..17495811 | 586..17 | 2655 | 97.7 | Minus |
2R | 25286936 | 2R | 17494997..17495187 | 775..586 | 890 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:51:23 has no hits.
BS12741.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:58 Download gff for
BS12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-PA | 996..1755 | 17..775 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:45:18 Download gff for
BS12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-RA | 1076..1841 | 9..775 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:16 Download gff for
BS12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-RA | 1076..1841 | 9..775 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:16 Download gff for
BS12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17494997..17495187 | 586..775 | 98 | -> | Minus |
2R | 17495243..17495817 | 9..585 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:45:18 Download gff for
BS12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13382502..13382692 | 586..775 | 98 | -> | Minus |
arm_2R | 13382748..13383322 | 9..585 | 97 | | Minus |
BS12741.5prime Sequence
829 bp (747 high quality bases) assembled on 2006-10-13
> BS12741.5prime
GAAGTTATCAGTCGACATGCATTCACTTACTCCACAATGGTGGTTTTTTC
TCTCGCTGATCCTGTTCTTCCTGGACTGGATCAGTGGTTTCAAATTCACC
CTCTTACACACGAATGACATGCACTCCAGGTTCGACCCCATTTCCGACAC
AGGTGGAAGGTGCAAGACTGTCGACGATGCAATGGGTATTTGCTTCGGGG
GATTTGGACGAGTGGCGGAAGCAGTTTCAGCAGCAAGAAATACTGCAACT
GATCCGGTTATTTACTTAAACGGTGGCGATTCCTTTCAAGGTACTTCCTG
GTTTTCGGTTTATCGAGGAAAAATGGTGGCCCGAATGCTAAATTTTCTGG
CTCCCGACGCCATGGCCCTTGGAGTTCACGAACTTGACGATGGAACAGAT
GCCTTGGCCGAATTTCTAAATACCATTACTTTTCCAATGGTCAGCAGCAA
TATAAACCTGATAAATGAACCTAAACTTGCGGAAAACGCTAATCTAGTGA
CTTCCTTGGTTATCACAAAGGGTAATCGTAAGATCGGCATAGTGGGCTAC
ATAAGACCGGATACCAAGGAGCGAACCCAACCAAGTAATGTGATATTTAA
ACGGGAGGTGCCCGCCATCAATAAGGAAACAAAGAAACTTAAGGGTCAAG
GCATCGATATCATCATTGCTTTGGGACATTCTGGCTACGAGAAAGATATG
GAAATAGCCAAGCGGTGTCCGGACGTGGATATCGTCGTCGGTGGTCAGTC
GCACACGTTTCTCTATTCGGGAAAGGCACCGAGTAAGGAAGTTTCGGAGG
GTCCCTATCCCACAATAATGGTAAAGCCC
BS12741.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30103-PA | 1755 | CG30103-RA | 1..813 | 17..829 | 4015 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30103-RA | 2022 | CG30103-RA | 81..893 | 17..829 | 4035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17494234..17494491 | 364..621 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 17493775..17493980 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 17494551..17494758 | 622..829 | 1010 | 99 | Plus |
2R | 25286936 | 2R | 17494041..17494183 | 223..365 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:55:03 has no hits.
BS12741.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:32:58 Download gff for
BS12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:44 Download gff for
BS12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-RA | 67..893 | 3..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:58 Download gff for
BS12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-RA | 67..893 | 3..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:58 Download gff for
BS12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17493761..17493980 | 3..222 | 97 | -> | Plus |
2R | 17494041..17494182 | 223..364 | 100 | -> | Plus |
2R | 17494235..17494491 | 365..621 | 100 | -> | Plus |
2R | 17494551..17494758 | 622..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:44 Download gff for
BS12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13381266..13381485 | 3..222 | 97 | -> | Plus |
arm_2R | 13381546..13381687 | 223..364 | 100 | -> | Plus |
arm_2R | 13381740..13381996 | 365..621 | 100 | -> | Plus |
arm_2R | 13382056..13382263 | 622..829 | 99 | | Plus |
BS12741.complete Sequence
1787 bp assembled on 2009-08-26
GenBank Submission: KX802728
> BS12741.complete
GAAGTTATCAGTCGACATGCATTCACTTACTCCACAATGGTGGTTTTTTC
TCTCGCTGATCCTGTTCTTCCTGGACTGGATCAGTGGTTTCAAATTCACC
CTCTTACACACGAATGACATGCACTCCAGGTTCGACCCCATTTCCGACAC
AGGTGGAAGGTGCAAGACTGTCGACGATGCAATGGGTATTTGCTTCGGGG
GATTTGGACGAGTGGCGGAAGCAGTTTCAGCAGCAAGAAATACTGCAACT
GATCCGGTTATTTACTTAAACGGTGGCGATTCCTTTCAAGGTACTTCCTG
GTTTTCGGTTTATCGAGGAAAAATGGTGGCCCGAATGCTAAATTTTCTGG
CTCCCGACGCCATGGCCCTTGGAGTTCACGAACTTGACGATGGAACAGAT
GCCTTGGCCGAATTTCTAAATACCATTACTTTTCCAATGGTCAGCAGCAA
TATAAACCTGATAAATGAACCTAAACTTGCGGAAAACGCTAATCTAGTGA
CTTCCTTGGTTATCACAAAGGGTAATCGTAAGATCGGCATAGTGGGCTAC
ATAAGACCGGATACCAAGGAGCGAACCCAACCAAGTAATGTGATATTTAA
ACGGGAGGTGCCCGCCATCAATAAGGAAACAAAGAAACTTAAGGGTCAAG
GCATCGATATCATCATTGCTTTGGGACATTCTGGCTACGAGAAAGATATG
GAAATAGCCAAGCGGTGTCCGGACGTGGATATCGTCGTCGGTGGTCAGTC
GCACACGTTTCTCTATTCGGGAAAGGCACCGAGTAAGGAAGTTTCGGAAG
GTCCCTATCCCACAATAGTGGTAAAGCCCGATGGCAGGAAAGTGCCCGTT
GTTCAGGCCTATGCTTATACGAAATATTTGGGAAATCTTTCCCTAGAATT
CGACAATGGTGGAAATCTGCTTAGTTTCAAGGGTAGCCCCATTTTATTGA
ATAATCGTTTTCATCCCCGAAAAGATGTTCAAGATTTTCTTCAACTGTAC
CGCCAGGTGATCGATGATATGGAGCGCCATGTGGTGGGCACCACATCCGT
TTATTTGAATGGCGATCGGAAGAGTTGTGGTTATAGTGAGTGCAATTTTG
GAAACTTCATAGCCGATAGCTTTGTGTATGCGAGAGTAGTGCAAACGATG
GCGGATAGAAGTTCTTGGACAGATGCTTCCATTGGACTCATCAATGCGGG
CGCTATTAGAGCGTCGATTGATCCCGGCGAAACGGGCGCCATTACGGAAG
CTGATGTGGTCACAGTGCTTCCCTTCAGCCAAGATCTCTATTACACCAGG
ATCAGTGGCAGTCAACTGATGAAGGCGCTGGAGCATTCCGCCCAAATGCG
TAGCAAACACATGACCAGTGCCCATTTACAGGTTTCGGGTCTTCGGCTCA
AGTTCAACCACAGTTTGCCCAAGGGCGAAAGGATCACGGAAATCCGTGCC
CTGTGCTCCGATTGCCAGATTCCCCACTACGAGGCCGTTGATACGAATGG
GTACTACGGTGTGGTAGTAACATCATTTCTATTGAATGGCGGAGAGGGCT
ACAGTTTCGTCGATCCAAAGAGACCGGAAGTGGAAAATATGACGATCCTT
GATCGCATGGCTGTCATCCAGTATCTGCAGGAGCACAAGGTTATCTATCC
GGAACGGGAGGATCGCCAATATGTGCAGCATAAGCACATCGCCAACTCGG
GCTACATGTCTCTTGAACCCAACTTAATACTCAGCTTTTTGTACTTTTGT
CACCGATTTCTCGTTGTCTAGAAGCTTTCTAGACCAT
BS12741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30103-RA | 1755 | CG30103-PA | 1..1755 | 17..1771 | 8580 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30103-RA | 2022 | CG30103-RA | 81..1835 | 17..1771 | 8580 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17495242..17495811 | 1202..1771 | 2655 | 97.7 | Plus |
2R | 25286936 | 2R | 17494884..17495187 | 899..1202 | 1520 | 100 | Plus |
2R | 25286936 | 2R | 17494551..17494827 | 622..898 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 17494234..17494491 | 364..621 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 17493775..17493980 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 17494041..17494183 | 223..365 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:34:50 has no hits.
BS12741.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:24 Download gff for
BS12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-RA | 14..1768 | 17..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:40 Download gff for
BS12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-RA | 81..1835 | 17..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:57 Download gff for
BS12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30103-RA | 81..1835 | 17..1771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:57 Download gff for
BS12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17494551..17494827 | 622..898 | 100 | -> | Plus |
2R | 17494884..17495187 | 899..1202 | 100 | -> | Plus |
2R | 17493775..17493980 | 17..222 | 100 | -> | Plus |
2R | 17494041..17494182 | 223..364 | 100 | -> | Plus |
2R | 17494235..17494491 | 365..621 | 100 | -> | Plus |
2R | 17495243..17495811 | 1203..1771 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:40 Download gff for
BS12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13381280..13381485 | 17..222 | 100 | -> | Plus |
arm_2R | 13381546..13381687 | 223..364 | 100 | -> | Plus |
arm_2R | 13381740..13381996 | 365..621 | 100 | -> | Plus |
arm_2R | 13382056..13382332 | 622..898 | 100 | -> | Plus |
arm_2R | 13382389..13382692 | 899..1202 | 100 | -> | Plus |
arm_2R | 13382748..13383316 | 1203..1771 | 97 | | Plus |
BS12741.pep Sequence
Translation from 16 to 1770
> BS12741.pep
MHSLTPQWWFFLSLILFFLDWISGFKFTLLHTNDMHSRFDPISDTGGRCK
TVDDAMGICFGGFGRVAEAVSAARNTATDPVIYLNGGDSFQGTSWFSVYR
GKMVARMLNFLAPDAMALGVHELDDGTDALAEFLNTITFPMVSSNINLIN
EPKLAENANLVTSLVITKGNRKIGIVGYIRPDTKERTQPSNVIFKREVPA
INKETKKLKGQGIDIIIALGHSGYEKDMEIAKRCPDVDIVVGGQSHTFLY
SGKAPSKEVSEGPYPTIVVKPDGRKVPVVQAYAYTKYLGNLSLEFDNGGN
LLSFKGSPILLNNRFHPRKDVQDFLQLYRQVIDDMERHVVGTTSVYLNGD
RKSCGYSECNFGNFIADSFVYARVVQTMADRSSWTDASIGLINAGAIRAS
IDPGETGAITEADVVTVLPFSQDLYYTRISGSQLMKALEHSAQMRSKHMT
SAHLQVSGLRLKFNHSLPKGERITEIRALCSDCQIPHYEAVDTNGYYGVV
VTSFLLNGGEGYSFVDPKRPEVENMTILDRMAVIQYLQEHKVIYPEREDR
QYVQHKHIANSGYMSLEPNLILSFLYFCHRFLVV*
BS12741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30103-PA | 584 | CG30103-PA | 1..584 | 1..584 | 3058 | 100 | Plus |
veil-PB | 599 | CG4827-PB | 36..573 | 26..556 | 1232 | 43.7 | Plus |
veil-PA | 599 | CG4827-PA | 36..573 | 26..556 | 1232 | 43.7 | Plus |
NT5E-2-PA | 585 | CG30104-PA | 32..557 | 26..550 | 1230 | 44.7 | Plus |
NT5E-2-PB | 585 | CG30104-PB | 32..557 | 26..550 | 1230 | 44.7 | Plus |