Clone BS12743 Report

Search the DGRC for BS12743

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG15547-RA
Protein status:BS12743.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12743.3prime Sequence

661 bp (660 high quality bases) assembled on 2006-10-13

> BS12743.3prime
ATGGTCTAGAAAGCTTTTATTCCCCTGGTGGAGCTTCCTCTGCGGGAGCT
TCTGCTGCGTGAGGATGTTCTTCAGCCACTGCAGGGACTTCAGGCGCAGC
AGTAGCCTCTTGGGCAGGAGGAGCCACTTCAGGAGCGGGAGCAGTTTCGC
CTGGCTCCCCAGCAGCAGCGTCACCCTCTTCGGACTCGTCATCTTGAGCT
GGTGGCGGTGGAGCTTCATGAACACTTCGGTCTGACTCCGCATCTGAGCC
CCCAGACTCGCCTACGCCTTCCTCCTCCAGGTCGTGCAGGTCCTCCTTGG
ACTCCTGCTCCTCAGCCTCCGGTTGGATTTCCTCGTAGACAATAACTTCC
TTCCACAAAATCTCCTCGTCCACACAGACTGGCTCCTCGTCATGAGGTTC
TACGCGCTTATTAAGGTCCAGATCCGAAATACCGGGCTGAGATCTTTCGA
AGCCTCCACAGGTGACACAGGAAGACGATGAGAGCAGCATTGAGGAATGC
GGGGATGTGGTGGACAAGGGTGCACTGCTGCTCTGCGTTTTCTTGACTCC
CGGCTGCGCGGCCCGCGCACTTGGCTTCGGAGCATAGGTCATGGTGGTCT
GCTGCGATTTGTCCTGGATAGCCACATCCGGTCGCTGCTGGCACTGGTTG
CTGATTTCCGG

BS12743.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-PA 1173 CG15547-RA 529..1173 661..17 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-RA 1601 CG15547-RA 633..1277 661..17 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30882116..30882760 17..661 3225 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:44:21 has no hits.

BS12743.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:03 Download gff for BS12743.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-PA 529..1173 17..661 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:13 Download gff for BS12743.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 633..1281 10..661 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:04 Download gff for BS12743.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 633..1281 10..661 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:04 Download gff for BS12743.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30882112..30882760 10..661 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:13 Download gff for BS12743.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26707834..26708482 10..661 99   Plus

BS12743.5prime Sequence

777 bp (649 high quality bases) assembled on 2006-10-13

> BS12743.5prime
GAAGTTATCAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGG
ACTATCTGCACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGC
TTCCAGATTCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGC
CGAGTTCTATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCA
TTCTGCTTTCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAAC
GCCGTGCAGGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATC
GGATCTGGAACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTC
GTGAGATAAACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATG
TTCGACCACAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGA
GGAGATCTACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGA
AGGTGCGTGTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAA
ATCAGCAACCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATC
GCAACAGACCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGC
AGCCGGGAGTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACA
TCCCCGCATTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGG
AAGCTTCGAAAGATCTCCGCCCGGAAT

BS12743.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-PA 1173 CG15547-RA 1..758 17..774 3715 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-RA 1601 CG15547-RA 101..862 13..774 3765 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30882531..30882927 774..378 1940 99.2 Minus
3R 32079331 3R 30883128..30883403 288..13 1380 100 Minus
3R 32079331 3R 30882983..30883071 377..289 445 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:06:10 has no hits.

BS12743.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:04 Download gff for BS12743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-PA 1..761 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:24 Download gff for BS12743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 92..865 5..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:54 Download gff for BS12743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 92..865 5..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:54 Download gff for BS12743.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30882528..30882927 378..777 99 <- Minus
3R 30882983..30883071 289..377 100 <- Minus
3R 30883128..30883410 5..288 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:24 Download gff for BS12743.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26708850..26709132 5..288 98   Minus
arm_3R 26708250..26708649 378..777 99 <- Minus
arm_3R 26708705..26708793 289..377 100 <- Minus

BS12743.complete Sequence

1205 bp assembled on 2006-11-01

GenBank Submission: FJ637282

> BS12743.complete
GAAGTTATCAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGG
ACTATCTGCACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGC
TTCCAGATTCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGC
CGAGTTCTATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCA
TTCTGCTTTCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAAC
GCCGTGCAGGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATC
GGATCTGGAACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTC
GTGAGATAAACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATG
TTCGACCACAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGA
GGAGATCTACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGA
AGGTGCGTGTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAA
ATCAGCAACCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATC
GCAGCAGACCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGC
AGCCGGGAGTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACA
TCCCCGCATTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGG
AGGCTTCGAAAGATCTCAGCCCGGTATTTCGGATCTGGACCTTAATAAGC
GCGTAGAACCTCATGACGAGGAGCCAGTCTGTGTGGACGAGGAGATTTTG
TGGAAGGAAGTTATTGTCTACGAGGAAATCCAACCGGAGGCTGAGGAGCA
GGAGTCCAAGGAGGACCTGCACGACCTGGAGGAGGAAGGCGTAGGCGAGT
CTGGGGGCTCAGATGCGGAGTCAGACCGAAGTGTTCATGAAGCTCCACCG
CCACCAGCTCAAGATGACGAGTCCGAAGAGGGTGACGCTGCTGCTGGGGA
GCCAGGCGAAACTGCTCCCGCTCCTGAAGTGGCTCCTCCTGCCCAAGAGG
CTACTGCTGCGCCTGAAGTCCCTGCAGTGGCTGAAGAACATCCTCACGCA
GCAGAAGCTCCCGCAGAGGAAGCTCCACCAGGGGAATAAAAGCTTTCTAG
ACCAT

BS12743.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-RA 1173 CG15547-PA 1..1173 17..1189 5865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-RA 1601 CG15547-RA 101..1277 13..1189 5885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30882116..30882927 1189..378 4060 100 Minus
3R 32079331 3R 30883128..30883403 288..13 1380 100 Minus
3R 32079331 3R 30882983..30883071 377..289 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:22:56 has no hits.

BS12743.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:21 Download gff for BS12743.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1173 17..1189 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:39 Download gff for BS12743.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 92..1277 5..1189 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:14 Download gff for BS12743.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 111..1275 23..1187 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:21 Download gff for BS12743.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 92..1277 5..1189 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:10 Download gff for BS12743.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 111..1275 23..1187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:10 Download gff for BS12743.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30882118..30882927 378..1187 100 <- Minus
3R 30882983..30883071 289..377 100 <- Minus
3R 30883128..30883393 23..288 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:14 Download gff for BS12743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26707840..26708649 378..1187 100 <- Minus
arm_3R 26708705..26708793 289..377 100 <- Minus
arm_3R 26708850..26709115 23..288 100   Minus

BS12743.pep Sequence

Translation from 16 to 1188

> BS12743.pep
MFENSLFIIKPDYLHKRRPVLLKLLAEGFQIQGNRRIAFSPETAAEFYAD
YADEKGFMLEVILLSKGVSEAFIVTKENAVQELLNIMICYFGSASDLERN
IHVTKNSYSVAREINFIFPNYIHEPHQMFDHNNFCNRPMLKPLLEEIYDI
MQNTDCSQENWKVRVSDYLVRSNPKMPEISNQCQQRPDVAIQDKSQQTTM
TYAPKPSARAAQPGVKKTQSSSAPLSTTSPHSSMLLSSSSCVTCGGFERS
QPGISDLDLNKRVEPHDEEPVCVDEEILWKEVIVYEEIQPEAEEQESKED
LHDLEEEGVGESGGSDAESDRSVHEAPPPPAQDDESEEGDAAAGEPGETA
PAPEVAPPAQEATAAPEVPAVAEEHPHAAEAPAEEAPPGE*

BS12743.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-PA 390 CG15547-PA 1..390 1..390 2041 100 Plus