Clone Sequence Records
BS12743.3prime Sequence
661 bp (660 high quality bases) assembled on 2006-10-13
> BS12743.3prime
ATGGTCTAGAAAGCTTTTATTCCCCTGGTGGAGCTTCCTCTGCGGGAGCT
TCTGCTGCGTGAGGATGTTCTTCAGCCACTGCAGGGACTTCAGGCGCAGC
AGTAGCCTCTTGGGCAGGAGGAGCCACTTCAGGAGCGGGAGCAGTTTCGC
CTGGCTCCCCAGCAGCAGCGTCACCCTCTTCGGACTCGTCATCTTGAGCT
GGTGGCGGTGGAGCTTCATGAACACTTCGGTCTGACTCCGCATCTGAGCC
CCCAGACTCGCCTACGCCTTCCTCCTCCAGGTCGTGCAGGTCCTCCTTGG
ACTCCTGCTCCTCAGCCTCCGGTTGGATTTCCTCGTAGACAATAACTTCC
TTCCACAAAATCTCCTCGTCCACACAGACTGGCTCCTCGTCATGAGGTTC
TACGCGCTTATTAAGGTCCAGATCCGAAATACCGGGCTGAGATCTTTCGA
AGCCTCCACAGGTGACACAGGAAGACGATGAGAGCAGCATTGAGGAATGC
GGGGATGTGGTGGACAAGGGTGCACTGCTGCTCTGCGTTTTCTTGACTCC
CGGCTGCGCGGCCCGCGCACTTGGCTTCGGAGCATAGGTCATGGTGGTCT
GCTGCGATTTGTCCTGGATAGCCACATCCGGTCGCTGCTGGCACTGGTTG
CTGATTTCCGG
BS12743.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-PA | 1173 | CG15547-RA | 529..1173 | 661..17 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-RA | 1601 | CG15547-RA | 633..1277 | 661..17 | 3225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30882116..30882760 | 17..661 | 3225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:44:21 has no hits.
BS12743.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:03 Download gff for
BS12743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-PA | 529..1173 | 17..661 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:13 Download gff for
BS12743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 633..1281 | 10..661 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:04 Download gff for
BS12743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 633..1281 | 10..661 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:04 Download gff for
BS12743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30882112..30882760 | 10..661 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:13 Download gff for
BS12743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26707834..26708482 | 10..661 | 99 | | Plus |
BS12743.5prime Sequence
777 bp (649 high quality bases) assembled on 2006-10-13
> BS12743.5prime
GAAGTTATCAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGG
ACTATCTGCACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGC
TTCCAGATTCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGC
CGAGTTCTATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCA
TTCTGCTTTCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAAC
GCCGTGCAGGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATC
GGATCTGGAACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTC
GTGAGATAAACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATG
TTCGACCACAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGA
GGAGATCTACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGA
AGGTGCGTGTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAA
ATCAGCAACCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATC
GCAACAGACCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGC
AGCCGGGAGTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACA
TCCCCGCATTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGG
AAGCTTCGAAAGATCTCCGCCCGGAAT
BS12743.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-PA | 1173 | CG15547-RA | 1..758 | 17..774 | 3715 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-RA | 1601 | CG15547-RA | 101..862 | 13..774 | 3765 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30882531..30882927 | 774..378 | 1940 | 99.2 | Minus |
3R | 32079331 | 3R | 30883128..30883403 | 288..13 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 30882983..30883071 | 377..289 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:06:10 has no hits.
BS12743.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:04 Download gff for
BS12743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-PA | 1..761 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:24 Download gff for
BS12743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 92..865 | 5..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:54 Download gff for
BS12743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 92..865 | 5..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:54 Download gff for
BS12743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30882528..30882927 | 378..777 | 99 | <- | Minus |
3R | 30882983..30883071 | 289..377 | 100 | <- | Minus |
3R | 30883128..30883410 | 5..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:24 Download gff for
BS12743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26708850..26709132 | 5..288 | 98 | | Minus |
arm_3R | 26708250..26708649 | 378..777 | 99 | <- | Minus |
arm_3R | 26708705..26708793 | 289..377 | 100 | <- | Minus |
BS12743.complete Sequence
1205 bp assembled on 2006-11-01
GenBank Submission: FJ637282
> BS12743.complete
GAAGTTATCAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGG
ACTATCTGCACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGC
TTCCAGATTCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGC
CGAGTTCTATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCA
TTCTGCTTTCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAAC
GCCGTGCAGGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATC
GGATCTGGAACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTC
GTGAGATAAACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATG
TTCGACCACAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGA
GGAGATCTACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGA
AGGTGCGTGTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAA
ATCAGCAACCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATC
GCAGCAGACCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGC
AGCCGGGAGTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACA
TCCCCGCATTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGG
AGGCTTCGAAAGATCTCAGCCCGGTATTTCGGATCTGGACCTTAATAAGC
GCGTAGAACCTCATGACGAGGAGCCAGTCTGTGTGGACGAGGAGATTTTG
TGGAAGGAAGTTATTGTCTACGAGGAAATCCAACCGGAGGCTGAGGAGCA
GGAGTCCAAGGAGGACCTGCACGACCTGGAGGAGGAAGGCGTAGGCGAGT
CTGGGGGCTCAGATGCGGAGTCAGACCGAAGTGTTCATGAAGCTCCACCG
CCACCAGCTCAAGATGACGAGTCCGAAGAGGGTGACGCTGCTGCTGGGGA
GCCAGGCGAAACTGCTCCCGCTCCTGAAGTGGCTCCTCCTGCCCAAGAGG
CTACTGCTGCGCCTGAAGTCCCTGCAGTGGCTGAAGAACATCCTCACGCA
GCAGAAGCTCCCGCAGAGGAAGCTCCACCAGGGGAATAAAAGCTTTCTAG
ACCAT
BS12743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-RA | 1173 | CG15547-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-RA | 1601 | CG15547-RA | 101..1277 | 13..1189 | 5885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30882116..30882927 | 1189..378 | 4060 | 100 | Minus |
3R | 32079331 | 3R | 30883128..30883403 | 288..13 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 30882983..30883071 | 377..289 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:22:56 has no hits.
BS12743.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:21 Download gff for
BS12743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:39 Download gff for
BS12743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 92..1277 | 5..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:14 Download gff for
BS12743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 111..1275 | 23..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:21 Download gff for
BS12743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 92..1277 | 5..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:10 Download gff for
BS12743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 111..1275 | 23..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:10 Download gff for
BS12743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30882118..30882927 | 378..1187 | 100 | <- | Minus |
3R | 30882983..30883071 | 289..377 | 100 | <- | Minus |
3R | 30883128..30883393 | 23..288 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:14 Download gff for
BS12743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26707840..26708649 | 378..1187 | 100 | <- | Minus |
arm_3R | 26708705..26708793 | 289..377 | 100 | <- | Minus |
arm_3R | 26708850..26709115 | 23..288 | 100 | | Minus |
BS12743.pep Sequence
Translation from 16 to 1188
> BS12743.pep
MFENSLFIIKPDYLHKRRPVLLKLLAEGFQIQGNRRIAFSPETAAEFYAD
YADEKGFMLEVILLSKGVSEAFIVTKENAVQELLNIMICYFGSASDLERN
IHVTKNSYSVAREINFIFPNYIHEPHQMFDHNNFCNRPMLKPLLEEIYDI
MQNTDCSQENWKVRVSDYLVRSNPKMPEISNQCQQRPDVAIQDKSQQTTM
TYAPKPSARAAQPGVKKTQSSSAPLSTTSPHSSMLLSSSSCVTCGGFERS
QPGISDLDLNKRVEPHDEEPVCVDEEILWKEVIVYEEIQPEAEEQESKED
LHDLEEEGVGESGGSDAESDRSVHEAPPPPAQDDESEEGDAAAGEPGETA
PAPEVAPPAQEATAAPEVPAVAEEHPHAAEAPAEEAPPGE*
BS12743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-PA | 390 | CG15547-PA | 1..390 | 1..390 | 2041 | 100 | Plus |