Clone Sequence Records
BS12746.3prime Sequence
823 bp (725 high quality bases) assembled on 2006-10-13
> BS12746.3prime
ATGGTCTAGAAAGCTTCTAATGCTTTCCCAGTTTTTGCCGATTTTTCTCC
GCCTCTTTCATCGGAGCTATATAGTGGCGCTTAAACATGTCATAGATGGA
GAAGTACACGGCACTCATCAGTCCTGCCTTGAGTAGAGTAGGCAACATTC
CCTTATAGAAGCCTCCGATTCCTTCCTCCCGAAACGTGGTGGTGATGCAG
CCCAGGATCGTAGGGCACTCGGGGTTGCGGCCAAAGGTCTTACGTTCCTG
TTTGAAGGCCATCAGCTGGATGCGCTTTTTAAGCAGGTCCGCCGGGTACA
CGATCATCTTGGCCAACACCCCTGACAGCGCCCCATTGAGAAACAGAAAT
GCGCCGTGGATTTCCTGGCGCTGGTCGGGAGGCTTGGCCATCAAGACAGC
CGCGTTGAGGTACTTGTAGAAGAGAAAGTTTGCCCCTACCAGCGGAAACA
CCTGCACAAGCGTGAAGGGTAGTCCTCGGGAAAGTCCCATCCACCCCTCC
ATCTTATAGACCTTTCGAAGTCCGGTAAAAGTGTTCATCTGACTGCGGCG
CGAGGAGGGGTCTGCGGCCACCATCTGTGTTCTTACCACGTCGAACGGCT
GGGCGGCCACGGCTCCCAGACATCCGGCTATGCCGCCGCAGATGAAAAAC
ATGAGAAAGGGTCGCTCCCTCCAGTAGTCAAACTGGTGGGCCATGGAGCG
AAGCTGTTCGTAGGACCAGAACTGTACCAGAGCGTACGAAATGCTCAGAA
CCTGGCCGGAGTTGTGACCACGGAACATACCGCGCATTCCCTCCTCGGGG
TACACCGACTTGGAAGCGTGGAT
BS12746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2857-PA | 972 | CG2857-RA | 166..972 | 823..17 | 3935 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 2769 | CG2857-RB | 396..1202 | 823..17 | 3975 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24899533..24900339 | 17..823 | 3975 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:51:55 has no hits.
BS12746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:05 Download gff for
BS12746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-PA | 166..972 | 17..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:14 Download gff for
BS12746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 396..1214 | 5..823 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:28 Download gff for
BS12746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 396..1214 | 5..823 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:28 Download gff for
BS12746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24899533..24900339 | 17..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:14 Download gff for
BS12746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20787056..20787862 | 17..823 | 99 | | Plus |
BS12746.5prime Sequence
753 bp (715 high quality bases) assembled on 2006-10-13
> BS12746.5prime
GAAGTTATCAGTCGACATGCCCGAAAACTCGGTGGTAGTCCAGTTAATGC
AGGCCGTCGGCGGCGGAATCGCCGGAGCTGCGACGCGGACCATAACCCAG
CCGCTGGACGTTCTGAAGATCCGATTCCAGATGCAAGTGGAGCCGGTGAC
AAACCATAAGGGGTCCAAATACCGTGGAGTCATCCACGCTTTCAAGTCGG
TGTACGCCGAGGAGGGAATGCGCGGTATGTTCCGTGGTCACAACTCCGGC
CAGGTTCTGAGCATTTCGTACGCTCTGGTACAGTTCTGGTCCTACGAACA
GCTTCGCTCCATGGCCCACCAGTTTGACTACTGGAGGGAGCGACCCTTTC
TCATGTTTTTCATCTGCGGCGGCATAGCCGGATGTCTGGGAGCCGTGGCC
GCCCAGCCGTTCGACGTGGTAAGAACACAGATGGTGGCCGCAGACCCCTC
CTCGCGCCGCAGTCAGATGAACACTTTTACCGGACTTCGAAAGGTCTATA
AGATGGAGGGGTGGATGGGACTTTCCCGAGGACTACCCTTCACGCTTGTG
CAGGTGTTTCCGCTGGTAGGGGCAAACTTTCTCTTCTACAAGTACCTCAA
CGCGGCTGTCTTGATGGCCAAGCCTCCCGACCAGCGCCAGGAAATCCACG
GCGCATTTCTGTTTCTCAATGGGGCGCTGTCAGGGGTGTTGGCCAAGATG
ATCGTGTACCCGGCGGACCTGCTTAAAAAGCGCATCCAGCTGATGGCCTT
CAA
BS12746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2857-PA | 972 | CG2857-RA | 1..737 | 17..753 | 3685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 2769 | CG2857-RB | 231..967 | 17..753 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24899768..24900504 | 753..17 | 3685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:32:17 has no hits.
BS12746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:05 Download gff for
BS12746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:39 Download gff for
BS12746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 225..965 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:51 Download gff for
BS12746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 225..965 | 9..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:51 Download gff for
BS12746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24899770..24900510 | 9..751 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:39 Download gff for
BS12746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20787293..20788033 | 9..751 | 99 | | Minus |
BS12746.complete Sequence
1004 bp assembled on 2006-11-01
GenBank Submission: FJ637283
> BS12746.complete
GAAGTTATCAGTCGACATGCCCGAAAACTCGGTGGTAGTCCAGTTAATGC
AGGCCGTCGGCGGCGGAATCGCCGGAGCTGCGACGCGGACCATAACCCAG
CCGCTGGACGTTCTGAAGATCCGATTCCAGATGCAAGTGGAGCCGGTGAC
AAACCATAAGGGGTCCAAATACCGTGGAGTCATCCACGCTTTCAAGTCGG
TGTACGCCGAGGAGGGAATGCGCGGTATGTTCCGTGGTCACAACTCCGGC
CAGGTTCTGAGCATTTCGTACGCTCTGGTACAGTTCTGGTCCTACGAACA
GCTTCGCTCCATGGCCCACCAGTTTGACTACTGGAGGGAGCGACCCTTTC
TCATGTTTTTCATCTGCGGCGGCATAGCCGGATGTCTGGGAGCCGTGGCC
GCCCAGCCGTTCGACGTGGTAAGAACACAGATGGTGGCCGCAGACCCCTC
CTCGCGCCGCAGTCAGATGAACACTTTTACCGGACTTCGAAAGGTCTATA
AGATGGAGGGGTGGATGGGACTTTCCCGAGGACTACCCTTCACGCTTGTG
CAGGTGTTTCCGCTGGTAGGGGCAAACTTTCTCTTCTACAAGTACCTCAA
CGCGGCTGTCTTGATGGCCAAGCCTCCCGACCAGCGCCAGGAAATCCACG
GCGCATTTCTGTTTCTCAATGGGGCGCTGTCAGGGGTGTTGGCCAAGATG
ATCGTGTACCCGGCGGACCTGCTTAAAAAGCGCATCCAGCTGATGGCCTT
CAAACAGGAACGTAAGACCTTTGGCCGCAACCCCGAGTGCCCTACGATCC
TGGGCTGCATCACCACCACGTTTCGGGAGGAAGGAATCGGAGGCTTCTAT
AAGGGAATGTTGCCTACTCTACTCAAGGCAGGACTGATGAGTGCCGTGTA
CTTCTCCATCTATGACATGTTTAAGCGCCACTATATAGCTCCGATGAAAG
AGGCGGAGAAAAATCGGCAAAAACTGGGAAAGCATTAGAAGCTTTCTAGA
CCAT
BS12746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 972 | CG2857-PB | 1..972 | 17..988 | 4830 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 2769 | CG2857-RB | 231..1202 | 17..988 | 4830 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24899533..24900504 | 988..17 | 4830 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:42:43 has no hits.
BS12746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:22 Download gff for
BS12746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-RA | 1..972 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:40 Download gff for
BS12746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-RA | 159..1148 | 9..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:24 Download gff for
BS12746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 231..1202 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:22 Download gff for
BS12746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-RA | 159..1148 | 9..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:52 Download gff for
BS12746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 231..1202 | 17..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:52 Download gff for
BS12746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24899533..24900504 | 17..988 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:24 Download gff for
BS12746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20787056..20788027 | 17..988 | 99 | | Minus |
BS12746.pep Sequence
Translation from 16 to 987
> BS12746.pep
MPENSVVVQLMQAVGGGIAGAATRTITQPLDVLKIRFQMQVEPVTNHKGS
KYRGVIHAFKSVYAEEGMRGMFRGHNSGQVLSISYALVQFWSYEQLRSMA
HQFDYWRERPFLMFFICGGIAGCLGAVAAQPFDVVRTQMVAADPSSRRSQ
MNTFTGLRKVYKMEGWMGLSRGLPFTLVQVFPLVGANFLFYKYLNAAVLM
AKPPDQRQEIHGAFLFLNGALSGVLAKMIVYPADLLKKRIQLMAFKQERK
TFGRNPECPTILGCITTTFREEGIGGFYKGMLPTLLKAGLMSAVYFSIYD
MFKRHYIAPMKEAEKNRQKLGKH*
BS12746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-PB | 323 | CG2857-PB | 1..323 | 1..323 | 1685 | 100 | Plus |
| Tpc1-PA | 332 | CG6608-PA | 22..329 | 3..304 | 630 | 41.6 | Plus |
| Tpc1-PB | 332 | CG6608-PB | 22..329 | 3..304 | 630 | 41.6 | Plus |
| att-ORFA-PD | 364 | CG4241-PD | 70..364 | 4..315 | 299 | 28.8 | Plus |
| att-ORFA-PE | 290 | CG4241-PE | 2..290 | 14..315 | 289 | 29.1 | Plus |
