Clone BS12758 Report

Search the DGRC for BS12758

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG30284-RA
Protein status:BS12758.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12758.3prime Sequence

777 bp (701 high quality bases) assembled on 2006-10-13

> BS12758.3prime
ATGGTCTAGAAAGCTTCTACATCTTCCTAATCTCAATCAGTAGGGCGCTG
TATAGAGATTGACAGAACTCCTCGAGACCCGCGTACGCGTTCCTCTCGAT
AAAGGTCTTGACCACTGCCCACACGGACTTGAGAAACTGGATCTCGGCAA
AGACCAAAACGTCCGTGTGCTCTTCCACGGTGGCCTTCAGGCAGAAGTGC
ATCAGGACGACGAAGGTGTCCGCGTAGGGGATATCTGCGTTAACGCTCTG
CACATCGATCGAGTACAGTTGGCCGGGTTGGCTGCACTCGCGCATGGTCT
GTGTCTCGGTAATTTTGGCAGTTTTGGGACCAACGTTCGCCTGAAGTGCC
ACAGTCATTGAGACAGTGCGCTGATTCTGGCCGCCGGCATTTCGCGCCCA
GACGCCCATATTCAGATCGGTGGACTTGCGCCGCTCATGGAAGCTCTGCA
GGAACGGCGAGGCAGAGAAGAGCATGTTGAACAGTGCGTCCACCCGCACC
ATCAGCCGCTCCTGCAGAAGCTTGCGCCCCTCGTGCGACGCACTGCACCG
GGCGGTTAGGTCCTCTGGCCTTCTGTACCCTGCGGCCGTTTTTAATTGTA
GTGTTTTCGATGGAGTACTTATTAGTGTGCTCCGGTGGCTCGGAGTTTTT
TTTCCGCGCTTACCGGATGTTTGCGGTATATTTTCTCTGCTGACCAGCGC
CGTAACTGCCACCGAATTGCAACGCGTGCTCCGCGGACTCAGCTTGCGAT
GTGTCCGTCTTCGTTCGGTCTGGGTAA

BS12758.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-PA 1062 CG30284-RA 302..1062 777..17 3805 100 Minus
CG30284-PB 978 CG30284-RB 415..978 580..17 2820 100 Minus
CG30284-PB 978 CG30284-RB 302..416 777..663 575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RA 1180 CG30284-RA 378..1138 777..17 3805 100 Minus
CG30284-RB 1083 CG30284-RB 478..1041 580..17 2820 100 Minus
CG30284-RB 1083 CG30284-RB 365..479 777..663 575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21650862..21651622 17..777 3805 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:14:37 has no hits.

BS12758.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:13 Download gff for BS12758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-PA 304..1062 17..775 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:35 Download gff for BS12758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 378..1140 13..777 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:47 Download gff for BS12758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 378..1140 13..777 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:47 Download gff for BS12758.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21650860..21651622 13..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:35 Download gff for BS12758.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17538365..17539127 13..777 99   Plus

BS12758.5prime Sequence

755 bp (705 high quality bases) assembled on 2006-10-13

> BS12758.5prime
GAAGTTATCAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGAT
TCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGA
ATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGCAGTCC
GCTGAACTCTGAGGAATTTCAGGACTCGGCAACGGCAGCCGCCACACAAC
AACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGAT
AAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGAC
GACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCA
AGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTG
GTCAGCAGAGAAAATATACCGCAAACATCCGGTAAGCGCGGAAAAAAAAC
TCCGAGCCACCGGAGCACACTAATAAGTACTCCATCGAAAACACTACAAT
TAAAAACGGCCGCAGGGTACAGAAGGCCAGAGGACCTAACCGCCCGGTGC
AGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGGAGCGGCTGATGGTGCG
GGTGGACGCACTGTTCAACATGCTCTTCTCTGCCTCGCCGTTCCTGCAGA
GCTTCCATGAGCGGCGCAAGTCCACCGATCTGAATATGGGCGTCTGGGCG
CGAAATGCCGGCGGCCAGAATCAGCGCACTGTCTCAATGACTGGGGCACT
TCAGG

BS12758.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-PA 1062 CG30284-RA 1..739 17..755 3670 99.8 Plus
CG30284-PB 978 CG30284-RB 1..416 17..432 2080 100 Plus
CG30284-PB 978 CG30284-RB 415..655 515..755 1180 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RA 1180 CG30284-RA 77..815 17..755 3680 99.9 Plus
CG30284-RB 1083 CG30284-RB 64..479 17..432 2080 100 Plus
CG30284-RB 1083 CG30284-RB 478..718 515..755 1190 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21651185..21651923 755..17 3680 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 03:57:42 has no hits.

BS12758.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:13 Download gff for BS12758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-PA 1..739 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:45 Download gff for BS12758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 77..815 17..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:01 Download gff for BS12758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 77..815 17..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:01 Download gff for BS12758.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21651185..21651923 17..755 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:45 Download gff for BS12758.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17538690..17539428 17..755 99   Minus

BS12758.complete Sequence

1094 bp assembled on 2006-11-01

GenBank Submission: FJ637285

> BS12758.complete
GAAGTTATCAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGAT
TCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGA
ATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGCAGTCC
GCTGAACTCTGAGGAATTTCAGGACTCGGCAACGGCAGCCGCCACACAAC
AACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGAT
AAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGAC
GACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCA
AGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTG
GTCAGCAGAGAAAATATACCGCAAACATCCGGTAAGCGCGGAAAAAAAAC
TCCGAGCCACCGGAGCACACTAATAAGTACTCCATCGAAAACACTACAAT
TAAAAACGGCCGCAGGGTACAGAAGGCCAGAGGACCTAACCGCCCGGTGC
AGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGGAGCGGCTGATGGTGCG
GGTGGACGCACTGTTCAACATGCTCTTCTCTGCCTCGCCGTTCCTGCAGA
GCTTCCATGAGCGGCGCAAGTCCACCGATCTGAATATGGGCGTCTGGGCG
CGAAATGCCGGCGGCCAGAATCAGCGCACTGTCTCAATGACTGTGGCACT
TCAGGCGAACGTTGGTCCCAAAACTGCCAAAATTACCGAGACACAGACCA
TGCGCGAGTGCAGCCAACCCGGCCAACTGTACTCGATCGATGTGCAGAGC
GTTAACGCAGATATCCCCTACGCGGACACCTTCGTCGTCCTGATGCACTT
CTGCCTGAAGGCCACCGTGGAAGAGCACACGGACGTTTTGGTCTTTGCCG
AGATCCAGTTTCTCAAGTCCGTGTGGGCAGTGGTCAAGACCTTTATCGAG
AGGAACGCGTACGCGGGTCTCGAGGAGTTCTGTCAATCTCTATACAGCGC
CCTACTGATTGAGATTAGGAAGATGTAGAAGCTTTCTAGACCAT

BS12758.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RA 1062 CG30284-PA 1..1062 17..1078 5310 100 Plus
CG30284-RB 978 CG30284-PB 415..978 515..1078 2820 100 Plus
CG30284-RB 978 CG30284-PB 1..416 17..432 2080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RA 1180 CG30284-RA 77..1138 17..1078 5310 100 Plus
CG30284-RB 1083 CG30284-RB 478..1041 515..1078 2820 100 Plus
CG30284-RB 1083 CG30284-RB 64..479 17..432 2080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21650862..21651923 1078..17 5310 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:49:00 has no hits.

BS12758.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:23 Download gff for BS12758.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 1..1062 17..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:42 Download gff for BS12758.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 77..1140 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:18 Download gff for BS12758.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 77..1138 17..1078 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:23 Download gff for BS12758.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 77..1140 17..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:52 Download gff for BS12758.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RA 77..1138 17..1078 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:52 Download gff for BS12758.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21650862..21651923 17..1078 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:18 Download gff for BS12758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17538367..17539428 17..1078 100   Minus

BS12758.pep Sequence

Translation from 16 to 1077

> BS12758.pep
MKSIQARLNHRFRKTLAMDKPSSSNSNRMSRSTSNCRSPAIIRSPLNSEE
FQDSATAAATQQRLFWSGQRASTAGRDDKTKPDSTAAGKKKPPTTTRQSN
FTQTERRRTHRKLSPRSTRCNSVAVTALVSRENIPQTSGKRGKKTPSHRS
TLISTPSKTLQLKTAAGYRRPEDLTARCSASHEGRKLLQERLMVRVDALF
NMLFSASPFLQSFHERRKSTDLNMGVWARNAGGQNQRTVSMTVALQANVG
PKTAKITETQTMRECSQPGQLYSIDVQSVNADIPYADTFVVLMHFCLKAT
VEEHTDVLVFAEIQFLKSVWAVVKTFIERNAYAGLEEFCQSLYSALLIEI
RKM*

BS12758.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-PA 353 CG30284-PA 1..353 1..353 1794 100 Plus
CG30284-PB 325 CG30284-PB 1..325 1..353 1616 92.1 Plus
CG34394-PG 804 CG34394-PG 126..469 19..349 525 35.4 Plus
CG34394-PA 1138 CG34394-PA 561..904 19..349 525 35.4 Plus
CG34394-PH 1206 CG34394-PH 537..880 19..349 525 35.4 Plus