Clone Sequence Records
BS12761.3prime Sequence
819 bp (723 high quality bases) assembled on 2006-10-13
> BS12761.3prime
ATGGTCTAGAAAGCTTTCACTTCGGTTTGATGTTCGCCGCCAGTTCGTCG
GCGGTCGGCGTGGATGTGTCGGCTGCGGTGACAGGTTGGGGCACCGGCTG
GACTTCTGGCTGGACCTCGACCGTCTTCGCTGTGCTCAGGCTGGGCTCGC
GCTCCTCGTCGGACTCGGTGGATTCGCGGATTAGCTGCAGGGGCGTTATC
AGCTTGCCACCGGCCACCTTGTACATATCACAGGTCTCGTTCACGTAGCG
GTTGAACACGTCCGGCTTGTCGGCATATACGTGGTGGCCGGCGCCCGTCA
CGATCTTGATGTCCACCATATTGCTGCCGCGCTGCGACTTGATCTTCTCC
CCCGACGACGAGTCGATCCACGAACGGGAGCCGTAGATGAACGTGATTGG
TATGTCGCTGCGCACGTCCTTGATGCGGTGAATCATGGGGTGCTTGGCCC
ATCCAAAGGATTGCATCATTGTGTGGAAGGCGGACTCACCGCTGGGATTC
TGCGCATTGCACTGGTGTATGTACTGCGGCAGCAAGTTGATATCCTCCTC
GATGGTGCTCTGGAACTTTCGCATAATGTCTGGCCGCGTCTTTTGCACCA
CCCACTGGCCAAAGGGTCCGGCGGCGCGGAGAGCCCACAACGGATTTAGC
GGGGTCAGTACTCTAGCTATGGCCCGCACCCAGAACGGTATTGTTTTGCC
GTTGGTCGAATCCGAGGGCTTCTCGGGGAAGCCCCAGGGATCGGCCAGTA
TGAGGTGTTTCACACGCTCCGGATGTGAGAGGGCGTAACTGGAGGCAATG
AACCCGCCCATCGAGTGGC
BS12761.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PA | 1365 | CG1882-RA | 563..1365 | 819..17 | 3915 | 99.5 | Minus |
CG1882-PC | 1164 | CG1882-RC | 362..1164 | 819..17 | 3915 | 99.5 | Minus |
CG1882-PD | 1164 | CG1882-RD | 362..1164 | 819..17 | 3915 | 99.5 | Minus |
CG1882-PB | 1164 | CG1882-RB | 362..1164 | 819..17 | 3915 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 917..1719 | 819..17 | 3955 | 99.5 | Minus |
CG1882-RF | 1756 | CG1882-RF | 719..1521 | 819..17 | 3955 | 99.5 | Minus |
CG1882-RE | 1668 | CG1882-RE | 631..1433 | 819..17 | 3955 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813708..7814510 | 819..17 | 3955 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:55:22 has no hits.
BS12761.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:15 Download gff for
BS12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-PB | 362..1164 | 17..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:57 Download gff for
BS12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RB | 548..1352 | 13..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:28 Download gff for
BS12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RE | 631..1435 | 13..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:28 Download gff for
BS12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7813708..7814512 | 13..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:57 Download gff for
BS12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3701213..3702017 | 13..819 | 99 | | Minus |
BS12761.5prime Sequence
790 bp (705 high quality bases) assembled on 2006-10-13
> BS12761.5prime
GAAGTTATCAGTCGACATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGT
ACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTG
GGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGGA
GGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGG
TGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGAC
ATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCT
GGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGA
TGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATT
GCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATACT
GGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCA
AAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTA
AATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGT
GCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGG
AGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAAT
CCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGGC
CAAGCACCCCATGATTCCCCGCATCAAGGACGTGCGCAGC
BS12761.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PA | 1365 | CG1882-RA | 202..975 | 17..790 | 3820 | 99.7 | Plus |
CG1882-PC | 1164 | CG1882-RC | 1..774 | 17..790 | 3820 | 99.7 | Plus |
CG1882-PD | 1164 | CG1882-RD | 1..774 | 17..790 | 3820 | 99.7 | Plus |
CG1882-PB | 1164 | CG1882-RB | 1..774 | 17..790 | 3820 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 556..1329 | 17..790 | 3840 | 99.7 | Plus |
CG1882-RF | 1756 | CG1882-RF | 358..1131 | 17..790 | 3840 | 99.7 | Plus |
CG1882-RE | 1668 | CG1882-RE | 270..1043 | 17..790 | 3840 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813347..7814120 | 17..790 | 3840 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:07:32 has no hits.
BS12761.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:16 Download gff for
BS12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-PB | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:41 Download gff for
BS12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RB | 178..960 | 8..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:12 Download gff for
BS12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RE | 261..1043 | 8..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:12 Download gff for
BS12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7813338..7814120 | 8..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:41 Download gff for
BS12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3700843..3701625 | 8..790 | 99 | | Plus |
BS12761.complete Sequence
1196 bp assembled on 2006-11-01
GenBank Submission: FJ637286
> BS12761.complete
GAAGTTATCAGTCGACATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGT
ACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTG
GGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGGA
GGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGG
TGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGAC
ATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCT
GGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGA
TGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATT
GCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATACT
GGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCA
AAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTA
AATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGT
GCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGG
AGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAAT
CCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGGC
CAAGCACCCCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCAA
TCACGTTCATCTACGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGAG
AAGATCAAGTCGCAGCGCGGCAGCAATATGGTGGACATCAAGATCGTGAC
GGGCGCCGGCCACCACGTATATGCCGACAAGCCGGACGTGTTCAACCGCT
ACGTGAACGAGACCTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGATA
ACGCCCCTGCAGCTAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCGA
GCCCAGCCTGAGCACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAGC
CGGTGCCCCAACCTGTCACCGCAGCCGACACATCCACGCCGACCGCCGAC
GAACTGGCGGCGAACATCAAACCGAAGTGAAAGCTTTCTAGACCAT
BS12761.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 1365 | CG1882-PG | 202..1365 | 17..1180 | 5805 | 99.9 | Plus |
CG1882-RF | 1365 | CG1882-PF | 202..1365 | 17..1180 | 5805 | 99.9 | Plus |
CG1882-RE | 1164 | CG1882-PE | 1..1164 | 17..1180 | 5805 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 556..1719 | 17..1180 | 5805 | 99.9 | Plus |
CG1882-RF | 1756 | CG1882-RF | 358..1521 | 17..1180 | 5805 | 99.9 | Plus |
CG1882-RE | 1668 | CG1882-RE | 270..1433 | 17..1180 | 5805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813347..7814510 | 17..1180 | 5805 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:33:57 has no hits.
BS12761.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:07 Download gff for
BS12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RD | 1..1164 | 17..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:22 Download gff for
BS12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RD | 285..1459 | 8..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:13 Download gff for
BS12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RB | 187..1349 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:07 Download gff for
BS12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RD | 285..1459 | 8..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:32 Download gff for
BS12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RE | 270..1432 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:32 Download gff for
BS12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7813347..7814509 | 17..1179 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:13 Download gff for
BS12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3700852..3702014 | 17..1179 | 99 | | Plus |
BS12761.pep Sequence
Translation from 16 to 1179
> BS12761.pep
MLRAVEKKILSYVKLPYRGFFVDIGPAVGEADKIWTISMNTESKEVPLVL
LHGLGAGIALWVMNLDAFAKGRPVYAMDILGFGRSSRPLFAKDALVCEKQ
FVKSVEEWRREMNINDMILLGHSMGGFIASSYALSHPERVKHLILADPWG
FPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWALRAAGPFGQWVVQKTRP
DIMRKFQSTIEEDINLLPQYIHQCNAQNPSGESAFHTMMQSFGWAKHPMI
HRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQRGSNMVDIKIVTGAGHH
VYADKPDVFNRYVNETCDMYKVAGGKLITPLQLIRESTESDEEREPSLST
AKTVEVQPEVQPVPQPVTAADTSTPTADELAANIKPK*
BS12761.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PE | 387 | CG1882-PE | 1..387 | 1..387 | 2031 | 100 | Plus |
CG1882-PB | 387 | CG1882-PB | 1..387 | 1..387 | 2031 | 100 | Plus |
CG1882-PD | 387 | CG1882-PD | 1..387 | 1..387 | 2031 | 100 | Plus |
CG1882-PC | 387 | CG1882-PC | 1..387 | 1..387 | 2031 | 100 | Plus |
CG1882-PG | 454 | CG1882-PG | 68..454 | 1..387 | 2031 | 100 | Plus |