Clone BS12761 Report

Search the DGRC for BS12761

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG1882-RB
Protein status:BS12761.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12761.3prime Sequence

819 bp (723 high quality bases) assembled on 2006-10-13

> BS12761.3prime
ATGGTCTAGAAAGCTTTCACTTCGGTTTGATGTTCGCCGCCAGTTCGTCG
GCGGTCGGCGTGGATGTGTCGGCTGCGGTGACAGGTTGGGGCACCGGCTG
GACTTCTGGCTGGACCTCGACCGTCTTCGCTGTGCTCAGGCTGGGCTCGC
GCTCCTCGTCGGACTCGGTGGATTCGCGGATTAGCTGCAGGGGCGTTATC
AGCTTGCCACCGGCCACCTTGTACATATCACAGGTCTCGTTCACGTAGCG
GTTGAACACGTCCGGCTTGTCGGCATATACGTGGTGGCCGGCGCCCGTCA
CGATCTTGATGTCCACCATATTGCTGCCGCGCTGCGACTTGATCTTCTCC
CCCGACGACGAGTCGATCCACGAACGGGAGCCGTAGATGAACGTGATTGG
TATGTCGCTGCGCACGTCCTTGATGCGGTGAATCATGGGGTGCTTGGCCC
ATCCAAAGGATTGCATCATTGTGTGGAAGGCGGACTCACCGCTGGGATTC
TGCGCATTGCACTGGTGTATGTACTGCGGCAGCAAGTTGATATCCTCCTC
GATGGTGCTCTGGAACTTTCGCATAATGTCTGGCCGCGTCTTTTGCACCA
CCCACTGGCCAAAGGGTCCGGCGGCGCGGAGAGCCCACAACGGATTTAGC
GGGGTCAGTACTCTAGCTATGGCCCGCACCCAGAACGGTATTGTTTTGCC
GTTGGTCGAATCCGAGGGCTTCTCGGGGAAGCCCCAGGGATCGGCCAGTA
TGAGGTGTTTCACACGCTCCGGATGTGAGAGGGCGTAACTGGAGGCAATG
AACCCGCCCATCGAGTGGC

BS12761.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PA 1365 CG1882-RA 563..1365 819..17 3915 99.5 Minus
CG1882-PC 1164 CG1882-RC 362..1164 819..17 3915 99.5 Minus
CG1882-PD 1164 CG1882-RD 362..1164 819..17 3915 99.5 Minus
CG1882-PB 1164 CG1882-RB 362..1164 819..17 3915 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 917..1719 819..17 3955 99.5 Minus
CG1882-RF 1756 CG1882-RF 719..1521 819..17 3955 99.5 Minus
CG1882-RE 1668 CG1882-RE 631..1433 819..17 3955 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813708..7814510 819..17 3955 99.5 Minus
Blast to na_te.dros performed on 2015-01-30 17:55:22 has no hits.

BS12761.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:15 Download gff for BS12761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-PB 362..1164 17..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:57 Download gff for BS12761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 548..1352 13..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:28 Download gff for BS12761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RE 631..1435 13..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:28 Download gff for BS12761.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7813708..7814512 13..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:57 Download gff for BS12761.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3701213..3702017 13..819 99   Minus

BS12761.5prime Sequence

790 bp (705 high quality bases) assembled on 2006-10-13

> BS12761.5prime
GAAGTTATCAGTCGACATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGT
ACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTG
GGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGGA
GGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGG
TGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGAC
ATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCT
GGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGA
TGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATT
GCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATACT
GGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCA
AAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTA
AATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGT
GCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGG
AGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAAT
CCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGGC
CAAGCACCCCATGATTCCCCGCATCAAGGACGTGCGCAGC

BS12761.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PA 1365 CG1882-RA 202..975 17..790 3820 99.7 Plus
CG1882-PC 1164 CG1882-RC 1..774 17..790 3820 99.7 Plus
CG1882-PD 1164 CG1882-RD 1..774 17..790 3820 99.7 Plus
CG1882-PB 1164 CG1882-RB 1..774 17..790 3820 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 556..1329 17..790 3840 99.7 Plus
CG1882-RF 1756 CG1882-RF 358..1131 17..790 3840 99.7 Plus
CG1882-RE 1668 CG1882-RE 270..1043 17..790 3840 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813347..7814120 17..790 3840 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 21:07:32 has no hits.

BS12761.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:16 Download gff for BS12761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-PB 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:41 Download gff for BS12761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 178..960 8..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:12 Download gff for BS12761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RE 261..1043 8..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:12 Download gff for BS12761.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7813338..7814120 8..790 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:41 Download gff for BS12761.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3700843..3701625 8..790 99   Plus

BS12761.complete Sequence

1196 bp assembled on 2006-11-01

GenBank Submission: FJ637286

> BS12761.complete
GAAGTTATCAGTCGACATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGT
ACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTG
GGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGGA
GGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGG
TGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGAC
ATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCT
GGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGA
TGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATT
GCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATACT
GGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCA
AAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTA
AATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGT
GCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGG
AGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAAT
CCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGGC
CAAGCACCCCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCAA
TCACGTTCATCTACGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGAG
AAGATCAAGTCGCAGCGCGGCAGCAATATGGTGGACATCAAGATCGTGAC
GGGCGCCGGCCACCACGTATATGCCGACAAGCCGGACGTGTTCAACCGCT
ACGTGAACGAGACCTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGATA
ACGCCCCTGCAGCTAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCGA
GCCCAGCCTGAGCACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAGC
CGGTGCCCCAACCTGTCACCGCAGCCGACACATCCACGCCGACCGCCGAC
GAACTGGCGGCGAACATCAAACCGAAGTGAAAGCTTTCTAGACCAT

BS12761.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 1365 CG1882-PG 202..1365 17..1180 5805 99.9 Plus
CG1882-RF 1365 CG1882-PF 202..1365 17..1180 5805 99.9 Plus
CG1882-RE 1164 CG1882-PE 1..1164 17..1180 5805 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 556..1719 17..1180 5805 99.9 Plus
CG1882-RF 1756 CG1882-RF 358..1521 17..1180 5805 99.9 Plus
CG1882-RE 1668 CG1882-RE 270..1433 17..1180 5805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813347..7814510 17..1180 5805 99.9 Plus
Blast to na_te.dros performed on 2014-11-26 22:33:57 has no hits.

BS12761.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:07 Download gff for BS12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RD 1..1164 17..1180 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:22 Download gff for BS12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RD 285..1459 8..1184 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:13 Download gff for BS12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 187..1349 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:07 Download gff for BS12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RD 285..1459 8..1184 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:32 Download gff for BS12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RE 270..1432 17..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:32 Download gff for BS12761.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7813347..7814509 17..1179 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:13 Download gff for BS12761.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3700852..3702014 17..1179 99   Plus

BS12761.pep Sequence

Translation from 16 to 1179

> BS12761.pep
MLRAVEKKILSYVKLPYRGFFVDIGPAVGEADKIWTISMNTESKEVPLVL
LHGLGAGIALWVMNLDAFAKGRPVYAMDILGFGRSSRPLFAKDALVCEKQ
FVKSVEEWRREMNINDMILLGHSMGGFIASSYALSHPERVKHLILADPWG
FPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWALRAAGPFGQWVVQKTRP
DIMRKFQSTIEEDINLLPQYIHQCNAQNPSGESAFHTMMQSFGWAKHPMI
HRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQRGSNMVDIKIVTGAGHH
VYADKPDVFNRYVNETCDMYKVAGGKLITPLQLIRESTESDEEREPSLST
AKTVEVQPEVQPVPQPVTAADTSTPTADELAANIKPK*

BS12761.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PE 387 CG1882-PE 1..387 1..387 2031 100 Plus
CG1882-PB 387 CG1882-PB 1..387 1..387 2031 100 Plus
CG1882-PD 387 CG1882-PD 1..387 1..387 2031 100 Plus
CG1882-PC 387 CG1882-PC 1..387 1..387 2031 100 Plus
CG1882-PG 454 CG1882-PG 68..454 1..387 2031 100 Plus