Clone BS12765 Report

Search the DGRC for BS12765

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptD1-RA
Protein status:BS12765.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12765.3prime Sequence

729 bp (687 high quality bases) assembled on 2006-10-13

> BS12765.3prime
ATGGTCTAGAAAGCTTTTAGGCAGCTACCGATTCGGAATCGTTGTAGTTA
TCCGAAACATAACCGTCGTTGGCATCATTTTCGCCATCGGAGTTCCATTT
GAGGCCATCTCCTTTGGTTGGTGTCCCATCCACGGCACGGTCCTCGTCGT
TCGACTCCTTCTTGGAGTTGTGTTGGCCCTGATCGGCGGAATCAGCATCA
TCTGCATCGTCATCAATATTTTTCGCTGGGCGACTACGGGGCTTTGTTGT
TTCCTCTTTGGACACCTTGCCAGCGGCAAGAGAGGGACGTCCACGTTTCT
TCGGCGCCACTACCGTCTTCTCAGGCGAGCTGTGTTCCTCCTCCCCGGAG
TTCTCATCGTCCTGATCGTCGTCATTGTCCTCGTGCTTCTCGACGGGTGC
AGCATTGGCCTTTGGACGACCGCGCGGACGACCGGTGGGTACGTAGCCAG
TACTGCCACCGCTACCCGACTTGTTCTGTGGTGGACGACCGCGTTTCTTG
GGCACTTGTGGCTCCCCATCGCCATTGGACTCGACAGCCCGCTTCTTGGG
TCTTCCCAGGCCGCGTCCCGTGCGCGATATGTTCAGGTTGACGGATCCAG
CCGACGGTCGGCCCACTGGGCGACGTTCTTCGATGCTGCTGTTGCCGTCG
TCGTCCTCATCCTGATCGTCTTCATTCTCGCTATCGCTGGGCTGGTGCTT
CTTGGGCCTGCCGGCCTTGCGCTTCTTGG

BS12765.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9745-PC 1068 D1-RC 356..1068 729..17 3565 100 Minus
CG9745-PA 1068 D1-RA 356..1068 729..17 3565 100 Minus
CG9745-PB 1068 D1-RB 356..1068 729..17 3565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
D1-RD 1597 CG9745-RD 449..1163 729..15 3575 100 Minus
D1-RA 1734 CG9745-RA 586..1300 729..15 3575 100 Minus
D1-RC 1811 CG9745-RC 663..1377 729..15 3575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9238517..9239173 15..671 3285 100 Plus
3R 32079331 3R 9239490..9239549 670..729 300 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:55:55 has no hits.

BS12765.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:18 Download gff for BS12765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9745-PB 356..1068 17..729 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:05 Download gff for BS12765.3prime
Subject Subject Range Query Range Percent Splice Strand
D1-RC 663..1377 15..729 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:33 Download gff for BS12765.3prime
Subject Subject Range Query Range Percent Splice Strand
D1-RC 663..1377 15..729 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:33 Download gff for BS12765.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9238517..9239171 15..669 100 <- Plus
3R 9239490..9239549 670..729 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:05 Download gff for BS12765.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5064239..5064893 15..669 100 <- Plus
arm_3R 5065212..5065271 670..729 100   Plus

BS12765.5prime Sequence

778 bp (685 high quality bases) assembled on 2006-10-13

> BS12765.5prime
GAAGTTATCAGTCGACATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGAC
CGTCAAAGGCATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCA
ATCTCGCCAGGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTC
CAGTGGCGGTGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCC
AAAATGACGAAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGAT
GGCTCCGGCGCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGG
CAGGGGACGACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATT
CGGTGAAGACGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAG
AAGCACCAGCCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGA
CGACGGCAACAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGG
CTGGATCCGTCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGA
CCCAAGAAGCGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCC
CAAGAAACGCGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTA
CTGGCTACGTACCCACCGGTCGTCCGCGCGGTCGTCCAAAGCCAATGCTG
CACCCGTCGAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAAC
TCCGGGGAGGAGGAACACAGCTCGCCTG

BS12765.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9745-PC 1068 D1-RC 1..675 17..691 3375 100 Plus
CG9745-PA 1068 D1-RA 1..675 17..691 3375 100 Plus
CG9745-PB 1068 D1-RB 1..675 17..691 3375 100 Plus
CG9745-PC 1068 D1-RC 676..763 691..778 440 100 Plus
CG9745-PA 1068 D1-RA 676..763 691..778 440 100 Plus
CG9745-PB 1068 D1-RB 676..763 691..778 440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
D1-RD 1597 CG9745-RD 94..856 17..778 3790 99.9 Plus
D1-RA 1734 CG9745-RA 231..993 17..778 3790 99.9 Plus
D1-RC 1811 CG9745-RC 308..1070 17..778 3790 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9239490..9239904 431..17 2075 100 Minus
3R 32079331 3R 9238824..9239173 778..430 1700 99.7 Minus
Blast to na_te.dros performed on 2015-01-31 10:15:03 has no hits.

BS12765.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:19 Download gff for BS12765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9745-PB 1..763 17..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:41 Download gff for BS12765.5prime
Subject Subject Range Query Range Percent Splice Strand
D1-RC 299..1070 6..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:53 Download gff for BS12765.5prime
Subject Subject Range Query Range Percent Splice Strand
D1-RC 299..1070 6..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:53 Download gff for BS12765.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9238824..9239171 432..778 99 <- Minus
3R 9239490..9239913 6..431 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:41 Download gff for BS12765.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5064546..5064893 432..778 99 <- Minus
arm_3R 5065212..5065635 6..431 99   Minus

BS12765.complete Sequence

1100 bp assembled on 2006-11-01

GenBank Submission: FJ637287

> BS12765.complete
GAAGTTATCAGTCGACATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGAC
CGTCAAAGGCATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCA
ATCTCGCCAGGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTC
CAGTGGCGGTGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCC
AAAATGACGAAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGAT
GGCTCCGGCGCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGG
CAGGGGACGACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATT
CGGTGAAGACGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAG
AAGCACCAGCCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGA
CGACGGCAACAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGG
CTGGATCCGTCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGA
CCCAAGAAGCGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCC
CAAGAAACGCGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTA
CTGGCTACGTACCCACCGGTCGTCCGCGCGGTCGTCCAAAGGCCAATGCT
GCACCCGTCGAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAA
CTCCGGGGAGGAGGAACACAGCTCGCCTGAGAAGACGGTAGTGGCGCCGA
AGAAACGTGGACGTCCCTCTCTTGCCGCTGGCAAGGTGTCCAAAGAGGAA
ACAACAAAGCCCCGTAGTCGCCCAGCGAAAAATATTGATGACGATGCAGA
TGATGCTGATTCCGCCGATCAGGGCCAACACAACTCCAAGAAGGAGTCGA
ACGACGAGGACCGTGCCGTGGATGGGACACCAACCAAAGGAGATGGCCTC
AAATGGAACTCCGATGGCGAAAATGATGCCAACGACGGTTATGTTTCGGA
TAACTACAACGATTCCGAATCGGTAGCTGCCTAAAAGCTTTCTAGACCAT

BS12765.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
D1-RD 1068 CG9745-PD 1..1068 17..1084 5340 100 Plus
D1-RA 1068 CG9745-PA 1..1068 17..1084 5340 100 Plus
D1-RC 1068 CG9745-PC 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
D1-RD 1597 CG9745-RD 94..1163 17..1086 5350 100 Plus
D1-RA 1734 CG9745-RA 231..1300 17..1086 5350 100 Plus
D1-RC 1811 CG9745-RC 308..1377 17..1086 5350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9238517..9239173 1086..430 3285 100 Minus
3R 32079331 3R 9239490..9239904 431..17 2075 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:01:34 has no hits.

BS12765.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:08 Download gff for BS12765.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RB 1..1068 17..1084 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:24 Download gff for BS12765.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RB 43..1118 10..1086 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:36 Download gff for BS12765.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 308..1373 17..1082 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:08 Download gff for BS12765.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RB 43..1118 10..1086 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:40 Download gff for BS12765.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 308..1373 17..1082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:40 Download gff for BS12765.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9238521..9239171 432..1082 100 <- Minus
3R 9239490..9239904 17..431 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:36 Download gff for BS12765.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5064243..5064893 432..1082 100 <- Minus
arm_3R 5065212..5065626 17..431 100   Minus

BS12765.pep Sequence

Translation from 16 to 1083

> BS12765.pep
MEEVAVKKRGRPSKASVGGKSSTAAVAAISPGIKKRGRPAKNKGSSGGGG
QRGRPPKASKIQNDEDPEDEGEEDGDGDGSGAELANNSSPSPTKGRGRPK
SSGGAGSGSGDSVKTPGSAKKRKAGRPKKHQPSDSENEDDQDEDDDGNSS
IEERRPVGRPSAGSVNLNISRTGRGLGRPKKRAVESNGDGEPQVPKKRGR
PPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDDQDDENSGEEE
HSSPEKTVVAPKKRGRPSLAAGKVSKEETTKPRSRPAKNIDDDADDADSA
DQGQHNSKKESNDEDRAVDGTPTKGDGLKWNSDGENDANDGYVSDNYNDS
ESVAA*

BS12765.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
D1-PD 355 CG9745-PD 1..355 1..355 1865 100 Plus
D1-PA 355 CG9745-PA 1..355 1..355 1865 100 Plus
D1-PC 355 CG9745-PC 1..355 1..355 1865 100 Plus
Dek-PD 612 CG5935-PD 326..601 69..309 192 28.2 Plus
Dek-PE 663 CG5935-PE 326..601 69..309 192 28.2 Plus