Clone Sequence Records
BS12765.3prime Sequence
729 bp (687 high quality bases) assembled on 2006-10-13
> BS12765.3prime
ATGGTCTAGAAAGCTTTTAGGCAGCTACCGATTCGGAATCGTTGTAGTTA
TCCGAAACATAACCGTCGTTGGCATCATTTTCGCCATCGGAGTTCCATTT
GAGGCCATCTCCTTTGGTTGGTGTCCCATCCACGGCACGGTCCTCGTCGT
TCGACTCCTTCTTGGAGTTGTGTTGGCCCTGATCGGCGGAATCAGCATCA
TCTGCATCGTCATCAATATTTTTCGCTGGGCGACTACGGGGCTTTGTTGT
TTCCTCTTTGGACACCTTGCCAGCGGCAAGAGAGGGACGTCCACGTTTCT
TCGGCGCCACTACCGTCTTCTCAGGCGAGCTGTGTTCCTCCTCCCCGGAG
TTCTCATCGTCCTGATCGTCGTCATTGTCCTCGTGCTTCTCGACGGGTGC
AGCATTGGCCTTTGGACGACCGCGCGGACGACCGGTGGGTACGTAGCCAG
TACTGCCACCGCTACCCGACTTGTTCTGTGGTGGACGACCGCGTTTCTTG
GGCACTTGTGGCTCCCCATCGCCATTGGACTCGACAGCCCGCTTCTTGGG
TCTTCCCAGGCCGCGTCCCGTGCGCGATATGTTCAGGTTGACGGATCCAG
CCGACGGTCGGCCCACTGGGCGACGTTCTTCGATGCTGCTGTTGCCGTCG
TCGTCCTCATCCTGATCGTCTTCATTCTCGCTATCGCTGGGCTGGTGCTT
CTTGGGCCTGCCGGCCTTGCGCTTCTTGG
BS12765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9745-PC | 1068 | D1-RC | 356..1068 | 729..17 | 3565 | 100 | Minus |
CG9745-PA | 1068 | D1-RA | 356..1068 | 729..17 | 3565 | 100 | Minus |
CG9745-PB | 1068 | D1-RB | 356..1068 | 729..17 | 3565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
D1-RD | 1597 | CG9745-RD | 449..1163 | 729..15 | 3575 | 100 | Minus |
D1-RA | 1734 | CG9745-RA | 586..1300 | 729..15 | 3575 | 100 | Minus |
D1-RC | 1811 | CG9745-RC | 663..1377 | 729..15 | 3575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9238517..9239173 | 15..671 | 3285 | 100 | Plus |
3R | 32079331 | 3R | 9239490..9239549 | 670..729 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:55:55 has no hits.
BS12765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:18 Download gff for
BS12765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9745-PB | 356..1068 | 17..729 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:05 Download gff for
BS12765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RC | 663..1377 | 15..729 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:33 Download gff for
BS12765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RC | 663..1377 | 15..729 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:33 Download gff for
BS12765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9238517..9239171 | 15..669 | 100 | <- | Plus |
3R | 9239490..9239549 | 670..729 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:05 Download gff for
BS12765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5064239..5064893 | 15..669 | 100 | <- | Plus |
arm_3R | 5065212..5065271 | 670..729 | 100 | | Plus |
BS12765.5prime Sequence
778 bp (685 high quality bases) assembled on 2006-10-13
> BS12765.5prime
GAAGTTATCAGTCGACATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGAC
CGTCAAAGGCATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCA
ATCTCGCCAGGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTC
CAGTGGCGGTGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCC
AAAATGACGAAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGAT
GGCTCCGGCGCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGG
CAGGGGACGACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATT
CGGTGAAGACGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAG
AAGCACCAGCCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGA
CGACGGCAACAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGG
CTGGATCCGTCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGA
CCCAAGAAGCGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCC
CAAGAAACGCGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTA
CTGGCTACGTACCCACCGGTCGTCCGCGCGGTCGTCCAAAGCCAATGCTG
CACCCGTCGAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAAC
TCCGGGGAGGAGGAACACAGCTCGCCTG
BS12765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9745-PC | 1068 | D1-RC | 1..675 | 17..691 | 3375 | 100 | Plus |
CG9745-PA | 1068 | D1-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
CG9745-PB | 1068 | D1-RB | 1..675 | 17..691 | 3375 | 100 | Plus |
CG9745-PC | 1068 | D1-RC | 676..763 | 691..778 | 440 | 100 | Plus |
CG9745-PA | 1068 | D1-RA | 676..763 | 691..778 | 440 | 100 | Plus |
CG9745-PB | 1068 | D1-RB | 676..763 | 691..778 | 440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
D1-RD | 1597 | CG9745-RD | 94..856 | 17..778 | 3790 | 99.9 | Plus |
D1-RA | 1734 | CG9745-RA | 231..993 | 17..778 | 3790 | 99.9 | Plus |
D1-RC | 1811 | CG9745-RC | 308..1070 | 17..778 | 3790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9239490..9239904 | 431..17 | 2075 | 100 | Minus |
3R | 32079331 | 3R | 9238824..9239173 | 778..430 | 1700 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:15:03 has no hits.
BS12765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:19 Download gff for
BS12765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9745-PB | 1..763 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:41 Download gff for
BS12765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RC | 299..1070 | 6..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:53 Download gff for
BS12765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RC | 299..1070 | 6..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:53 Download gff for
BS12765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9238824..9239171 | 432..778 | 99 | <- | Minus |
3R | 9239490..9239913 | 6..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:41 Download gff for
BS12765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5064546..5064893 | 432..778 | 99 | <- | Minus |
arm_3R | 5065212..5065635 | 6..431 | 99 | | Minus |
BS12765.complete Sequence
1100 bp assembled on 2006-11-01
GenBank Submission: FJ637287
> BS12765.complete
GAAGTTATCAGTCGACATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGAC
CGTCAAAGGCATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCA
ATCTCGCCAGGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTC
CAGTGGCGGTGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCC
AAAATGACGAAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGAT
GGCTCCGGCGCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGG
CAGGGGACGACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATT
CGGTGAAGACGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAG
AAGCACCAGCCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGA
CGACGGCAACAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGG
CTGGATCCGTCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGA
CCCAAGAAGCGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCC
CAAGAAACGCGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTA
CTGGCTACGTACCCACCGGTCGTCCGCGCGGTCGTCCAAAGGCCAATGCT
GCACCCGTCGAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAA
CTCCGGGGAGGAGGAACACAGCTCGCCTGAGAAGACGGTAGTGGCGCCGA
AGAAACGTGGACGTCCCTCTCTTGCCGCTGGCAAGGTGTCCAAAGAGGAA
ACAACAAAGCCCCGTAGTCGCCCAGCGAAAAATATTGATGACGATGCAGA
TGATGCTGATTCCGCCGATCAGGGCCAACACAACTCCAAGAAGGAGTCGA
ACGACGAGGACCGTGCCGTGGATGGGACACCAACCAAAGGAGATGGCCTC
AAATGGAACTCCGATGGCGAAAATGATGCCAACGACGGTTATGTTTCGGA
TAACTACAACGATTCCGAATCGGTAGCTGCCTAAAAGCTTTCTAGACCAT
BS12765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
D1-RD | 1068 | CG9745-PD | 1..1068 | 17..1084 | 5340 | 100 | Plus |
D1-RA | 1068 | CG9745-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
D1-RC | 1068 | CG9745-PC | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
D1-RD | 1597 | CG9745-RD | 94..1163 | 17..1086 | 5350 | 100 | Plus |
D1-RA | 1734 | CG9745-RA | 231..1300 | 17..1086 | 5350 | 100 | Plus |
D1-RC | 1811 | CG9745-RC | 308..1377 | 17..1086 | 5350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9238517..9239173 | 1086..430 | 3285 | 100 | Minus |
3R | 32079331 | 3R | 9239490..9239904 | 431..17 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:01:34 has no hits.
BS12765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:08 Download gff for
BS12765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RB | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:24 Download gff for
BS12765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RB | 43..1118 | 10..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:36 Download gff for
BS12765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RC | 308..1373 | 17..1082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:08 Download gff for
BS12765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RB | 43..1118 | 10..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:40 Download gff for
BS12765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
D1-RC | 308..1373 | 17..1082 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:40 Download gff for
BS12765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9238521..9239171 | 432..1082 | 100 | <- | Minus |
3R | 9239490..9239904 | 17..431 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:36 Download gff for
BS12765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5064243..5064893 | 432..1082 | 100 | <- | Minus |
arm_3R | 5065212..5065626 | 17..431 | 100 | | Minus |
BS12765.pep Sequence
Translation from 16 to 1083
> BS12765.pep
MEEVAVKKRGRPSKASVGGKSSTAAVAAISPGIKKRGRPAKNKGSSGGGG
QRGRPPKASKIQNDEDPEDEGEEDGDGDGSGAELANNSSPSPTKGRGRPK
SSGGAGSGSGDSVKTPGSAKKRKAGRPKKHQPSDSENEDDQDEDDDGNSS
IEERRPVGRPSAGSVNLNISRTGRGLGRPKKRAVESNGDGEPQVPKKRGR
PPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDDQDDENSGEEE
HSSPEKTVVAPKKRGRPSLAAGKVSKEETTKPRSRPAKNIDDDADDADSA
DQGQHNSKKESNDEDRAVDGTPTKGDGLKWNSDGENDANDGYVSDNYNDS
ESVAA*
BS12765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
D1-PD | 355 | CG9745-PD | 1..355 | 1..355 | 1865 | 100 | Plus |
D1-PA | 355 | CG9745-PA | 1..355 | 1..355 | 1865 | 100 | Plus |
D1-PC | 355 | CG9745-PC | 1..355 | 1..355 | 1865 | 100 | Plus |
Dek-PD | 612 | CG5935-PD | 326..601 | 69..309 | 192 | 28.2 | Plus |
Dek-PE | 663 | CG5935-PE | 326..601 | 69..309 | 192 | 28.2 | Plus |