Clone Sequence Records
BS12767.3prime Sequence
716 bp (701 high quality bases) assembled on 2006-10-13
> BS12767.3prime
ATGGTCTAGAAAGCTTTCAGTAGGCGTAATCCAGATTGGCCACCTCGGGC
AGCACTGTAAGATTCTTGTGCACCTCCAGCCAGCGCTTCGCATCGTATGT
GGTCTTGGCGTAGGTGCGTCCGAACTTGTACGTCTCCCCAGGAACATGAC
CCGCATAGTTGGGCACCATTCCGCTGTCCTCGTGATAGACGACGAAGTGT
CCCACGGGCGGGCAGGTGATGGACGGCCGGCTGAGATCCTGTCCACAACA
CCACGTATCCCGCTTCCGCTTGTACATATAGTCCGAGAAGCTGCACAGTG
CCCGGTTGGTCAGCACCTTGTTGGACTCCCCGAATCGGGTCACTGACATG
GGAATGTGGCCGGAGTAACCATTGATTATGAACTTGTCGGCATCTTCATC
CTCCAGGAAGTGCGGCGATGTGAACTTGCTATAGCAGAGTTTCTCCGTTT
TCGGCGGACAAGTCTCGTCCTTAATGCCCTTGGACACTCCGGTCACCAGG
ATCAGGGGCGATCGGTAGTAGGTTTGTGGCAGCAGTCTTTCGTTGATCTT
GCGGTCGAAGAGTCCGTTCCCACTCTCCAGTAGATCCCGATGCCTGAGCG
TCCGATTCTCGCACCGATACAACTCCATCAGCGTCTCATGCCGAGCCACT
CCAGCGGATGCGGGAGCAACATATCGCTTGCCAATCTGACTCACTTTTGT
TCGGGACAAATCCGGC
BS12767.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-PA | 972 | CG18335-RA | 292..972 | 697..17 | 3330 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-RA | 1346 | CG18335-RA | 438..1137 | 716..16 | 3435 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11289897..11290596 | 16..716 | 3410 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:52:15 has no hits.
BS12767.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:20 Download gff for
BS12767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-PA | 274..972 | 17..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:15 Download gff for
BS12767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 438..1137 | 16..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:30 Download gff for
BS12767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 438..1137 | 16..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:30 Download gff for
BS12767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11289897..11290596 | 16..716 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:15 Download gff for
BS12767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7177402..7178101 | 16..716 | 99 | | Plus |
BS12767.5prime Sequence
743 bp (676 high quality bases) assembled on 2006-10-13
> BS12767.5prime
GAAGTTATCAGTCGACATGGACCACGCTATAACGCCGGAACCGCACTTGG
TGCCAGGTTACACGGGTCACTGCGCCCAGAATCGCGACCGAGTGGGTCGA
ACTTATGGCCGTCAGACGCACAAGCTGTTAATAGACCCCTGTATTTACCA
CGCTCCCGAACTGATAGTGGCTCCCATTCATGCCAAGCGCGGCCTCAAGG
ACTATCCCACAGAGCAGGAGCTGAAGATTCTGCGCACTCGTGAGGGTTTG
GTGGACTCCGTTTACCGACATCCCATATTACCAGGCTACGCCGGATTTGT
CCCGAACAAAGTGAGTCAGATTGGCAAGCGATATGTTGCTGCCGCATCCG
CTGGAGTGGCTCGGCATGAGACGCTGATGGAGTTGTATCGGTGCGAGAAT
CGGACGCTCAGGCATCGGGATCTACTGGAGAGTGGGAACGGACTCTTCGA
CCGCAAGATCAACGAAAGACTGCTGCCACAAACCTACTACCGATCGCCCC
TGATCCTGGTGACCGGAGTGTCCAAGGGCATTAAGGACGAGACTTGTCCG
CCGAAAACGGAGAAACTCTGCTATAGCAAGTTCACATCGCCGCACTTCCT
GGAGGATGAAGATGCCGACAAGTTCATAATCAATGGTTACTCCGGCCACA
TTCCCATGTCAGTGACCCGATTCGGGGAGTCCAACAAGGTGCTGACCAAC
CGGGCACTGTGCAGCTTCTCGGACTATATGGTACAGCGGAAGC
BS12767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-PA | 972 | CG18335-RA | 1..714 | 17..730 | 3520 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-RA | 1346 | CG18335-RA | 165..891 | 17..743 | 3560 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11290143..11290829 | 743..57 | 3345 | 99.1 | Minus |
| 2R | 25286936 | 2R | 11290892..11290932 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:13:39 has no hits.
BS12767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:20 Download gff for
BS12767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-PA | 1..727 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:04 Download gff for
BS12767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 163..891 | 14..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:16 Download gff for
BS12767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 163..891 | 14..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:16 Download gff for
BS12767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11290143..11290828 | 58..743 | 99 | <- | Minus |
| 2R | 11290892..11290934 | 14..57 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:04 Download gff for
BS12767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7177648..7178333 | 58..743 | 99 | <- | Minus |
| arm_2R | 7178397..7178439 | 14..57 | 97 | | Minus |
BS12767.complete Sequence
1004 bp assembled on 2006-11-01
GenBank Submission: FJ637288
> BS12767.complete
GAAGTTATCAGTCGACATGGACCACGCTATAACGCCGGAACCGCACTTGG
TGCCAGGTTACACGGGTCACTGCGCCCAGAATCGCGACCGAGTGGGTCGA
ACTTATGGCCGTCAGACGCACAAGCTGTTAATAGACCCCTGTATTTACCA
CGCTCCCGAACTGATAGTGGCTCCCATTCATGCCAAGCGCGGCCTCAAGG
ACTATCCCACAGAGCAGGAGCTGAAGATTCTGCGCACTCGTGAGGGTTTG
GTGGACTCCGTTTACCGACATCCCATATTACCAGGCTACGCCGGATTTGT
CCCGAACAAAGTGAGTCAGATTGGCAAGCGATATGTTGCTGCCGCATCCG
CTGGAGTGGCTCGGCATGAGACGCTGATGGAGTTGTATCGGTGCGAGAAT
CGGACGCTCAGGCATCGGGATCTACTGGAGAGTGGGAACGGACTCTTCGA
CCGCAAGATCAACGAAAGACTGCTGCCACAAACCTACTACCGATCGCCCC
TGATCCTGGTGACCGGAGTGTCCAAGGGCATTAAGGACGAGACTTGTCCG
CCGAAAACGGAGAAACTCTGCTATAGCAAGTTCACATCGCCGCACTTCCT
GGAGGATGAAGATGCCGACAAGTTCATAATCAATGGTTACTCCGGCCACA
TTCCCATGTCAGTGACCCGATTCGGGGAGTCCAACAAGGTGCTGACCAAC
CGGGCACTGTGCAGCTTCTCGGACTATATGTACAAGCGGAAGCGGGATAC
GTGGTGTTGTGGACAGGATCTCAGCCGGCCGTCCATCACCTGCCCGCCCG
TGGGACACTTCGTCGTCTATCACGAGGACAGCGGAATGGTGCCCAACTAT
GCGGGTCATGTTCCTGGGGAGACGTACAAGTTCGGACGCACCTACGCCAA
GACCACATACGATGCGAAGCGCTGGCTGGAGGTGCACAAGAATCTTACAG
TGCTGCCCGAGGTGGCCAATCTGGATTACGCCTACTGAAAGCTTTCTAGA
CCAT
BS12767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-RA | 972 | CG18335-PA | 1..972 | 17..988 | 4830 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-RA | 1346 | CG18335-RA | 165..1137 | 17..989 | 4835 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11289897..11290829 | 989..57 | 4635 | 99.8 | Minus |
| 2R | 25286936 | 2R | 11290892..11290932 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:43:18 has no hits.
BS12767.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:11 Download gff for
BS12767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 1..972 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:25 Download gff for
BS12767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 103..1077 | 14..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:41 Download gff for
BS12767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 165..1135 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:11 Download gff for
BS12767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 103..1077 | 14..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:26 Download gff for
BS12767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 165..1135 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:26 Download gff for
BS12767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11289899..11290828 | 58..987 | 99 | <- | Minus |
| 2R | 11290892..11290932 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:41 Download gff for
BS12767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7177404..7178333 | 58..987 | 99 | <- | Minus |
| arm_2R | 7178397..7178437 | 17..57 | 100 | | Minus |
BS12767.pep Sequence
Translation from 16 to 987
> BS12767.pep
MDHAITPEPHLVPGYTGHCAQNRDRVGRTYGRQTHKLLIDPCIYHAPELI
VAPIHAKRGLKDYPTEQELKILRTREGLVDSVYRHPILPGYAGFVPNKVS
QIGKRYVAAASAGVARHETLMELYRCENRTLRHRDLLESGNGLFDRKINE
RLLPQTYYRSPLILVTGVSKGIKDETCPPKTEKLCYSKFTSPHFLEDEDA
DKFIINGYSGHIPMSVTRFGESNKVLTNRALCSFSDYMYKRKRDTWCCGQ
DLSRPSITCPPVGHFVVYHEDSGMVPNYAGHVPGETYKFGRTYAKTTYDA
KRWLEVHKNLTVLPEVANLDYAY*
BS12767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-PA | 323 | CG18335-PA | 1..323 | 1..323 | 1756 | 100 | Plus |
