Clone BS12768 Report

Search the DGRC for BS12768

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG46025-RB
Protein status:BS12768.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12768.3prime Sequence

660 bp (660 high quality bases) assembled on 2006-10-13

> BS12768.3prime
ATGGTCTAGAAAGCTTTTAGGCTTTGGCTGGCTCCTGGGCCTCGTGATCG
GAGGAGATATCTTGTTCCGGCTCCTCCACCACCGCCTCCTCCTCGCACTC
CTCCGGTGCCTCGACGTAGTTCTCACCCATGATGATCTCCTCGGCCAGTT
GATACAGCTCGCGAATATCCTTGGCATTTCTGAGCGCCACGATCTTCTCA
TCCTCGAAGCGCAGCTGATCGTACTGCTGCTTGGAGATGAGCAGACCTCG
ATTGAACTCGTCCTCCATTTCGGCCTCCAGTTCCTCCGCGTACTGCTGCT
TGGCCAGCGTCAGGCTGATGGCATCCTCGCTGATCACCGTCTCCTCGGAG
ACATCGGTGGCATCGTCCAGATATTTGGAGTTCACTGCGCCGCCCTGGAA
GTCATCGTCCTCCATCGAAGGTTCTTGTGGCATGATGATCTCCCCGCTGG
AACGATGGGCATCCTCGATAAGTTCGGTTAGTTGTTGAGTGGTGACCGCA
AGTTTGACATCTTTTAGCTTGTCCTCCAGCTGATTGCGAATACGCAGCTC
GGTCTCCCGGAACTTTTGCCTGGCCCTGACTATATTCTGTATATCCTGGG
GATCCGAGGAGTAGGGCTGGGATATGCGCAACGAACGCTCCTTCATGTCG
ACTGATAACT

BS12768.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7196-PA 1326 CG7196-RA 697..1326 646..17 3050 99.3 Minus
CG7196-PB 630 CG7196-RB 1..630 646..17 3050 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 2435 CG46025-RD 1257..1886 646..17 3090 99.4 Minus
CG46025-RB 1083 CG46025-RB 104..733 646..17 3090 99.4 Minus
CG46025-RA 1837 CG46025-RA 858..1487 646..17 3090 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7764753..7765155 571..169 1955 99 Minus
2L 23513712 2L 7765212..7765366 171..17 775 100 Minus
2L 23513712 2L 7764611..7764688 646..569 390 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:08:01 has no hits.

BS12768.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:21 Download gff for BS12768.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-PB 1..630 17..646 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:48 Download gff for BS12768.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 858..1487 17..646 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:56 Download gff for BS12768.3prime
Subject Subject Range Query Range Percent Splice Strand
CG46025-RA 858..1487 17..646 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:56 Download gff for BS12768.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7765214..7765366 17..169 100   Minus
2L 7764611..7764687 570..646 100 -> Minus
2L 7764755..7765154 170..569 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:48 Download gff for BS12768.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7764611..7764687 570..646 100 -> Minus
arm_2L 7764755..7765154 170..569 99 -> Minus
arm_2L 7765214..7765366 17..169 100   Minus

BS12768.5prime Sequence

660 bp (660 high quality bases) assembled on 2006-10-13

> BS12768.5prime
GAAGTTATCAGTCGACATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCT
ACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAG
TTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAA
AGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGG
ATGCCCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATG
GAGGACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGA
TGCCACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCC
TGACGCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAG
GACGAGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCT
GCGCTTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTC
GCGAGCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTACGTC
GAGGCACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACA
AGATATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCTAAAAGC
TTTCTAGACC

BS12768.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7196-PA 1326 CG7196-RA 697..1326 17..646 3050 99.3 Plus
CG7196-PB 630 CG7196-RB 1..630 17..646 3050 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 2435 CG46025-RD 1257..1886 17..646 3090 99.4 Plus
CG46025-RB 1083 CG46025-RB 104..733 17..646 3090 99.4 Plus
CG46025-RA 1837 CG46025-RA 858..1487 17..646 3090 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7764753..7765155 92..494 1955 99 Plus
2L 23513712 2L 7765212..7765366 492..646 775 100 Plus
2L 23513712 2L 7764611..7764688 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:23:40 has no hits.

BS12768.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:21 Download gff for BS12768.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-PB 1..630 17..646 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:23 Download gff for BS12768.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 858..1487 17..646 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:12 Download gff for BS12768.5prime
Subject Subject Range Query Range Percent Splice Strand
CG46025-RA 858..1487 17..646 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:12 Download gff for BS12768.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7764611..7764687 17..93 100 -> Plus
2L 7764755..7765154 94..493 99 -> Plus
2L 7765214..7765366 494..646 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:23 Download gff for BS12768.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7764611..7764687 17..93 100 -> Plus
arm_2L 7764755..7765154 94..493 99 -> Plus
arm_2L 7765214..7765366 494..646 100   Plus

BS12768.complete Sequence

662 bp assembled on 2006-11-01

GenBank Submission: FJ637289

> BS12768.complete
GAAGTTATCAGTCGACATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCT
ACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAG
TTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAA
AGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGG
ATGCCCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATG
GAGGACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGA
TGCCACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCC
TGACGCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAG
GACGAGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCT
GCGCTTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTC
GCGAGCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTACGTC
GAGGCACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACA
AGATATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCTAAAAGC
TTTCTAGACCAT

BS12768.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 1791 CG46025-PD 1162..1791 17..646 3090 99.4 Plus
CG46025-RB 630 CG46025-PB 1..630 17..646 3090 99.4 Plus
CG46025-RA 1326 CG46025-PA 697..1326 17..646 3090 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 2435 CG46025-RD 1257..1886 17..646 3090 99.4 Plus
CG46025-RB 1083 CG46025-RB 104..733 17..646 3090 99.4 Plus
CG46025-RA 1837 CG46025-RA 858..1487 17..646 3090 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7764753..7765155 92..494 1955 99 Plus
2L 23513712 2L 7765212..7765366 492..646 775 100 Plus
2L 23513712 2L 7764611..7764688 17..94 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:44:12 has no hits.

BS12768.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:12 Download gff for BS12768.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RB 1..630 17..646 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:27 Download gff for BS12768.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RB 104..733 17..646 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:38 Download gff for BS12768.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 858..1485 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:12 Download gff for BS12768.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RB 104..733 17..646 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:30 Download gff for BS12768.complete
Subject Subject Range Query Range Percent Splice Strand
CG46025-RA 858..1485 17..644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:30 Download gff for BS12768.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7764611..7764687 17..93 100 -> Plus
2L 7764755..7765154 94..493 99 -> Plus
2L 7765214..7765364 494..644 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:38 Download gff for BS12768.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7764611..7764687 17..93 100 -> Plus
arm_2L 7764755..7765154 94..493 99 -> Plus
arm_2L 7765214..7765364 494..644 100   Plus

BS12768.pep Sequence

Translation from 16 to 645

> BS12768.pep
MKERSLRISQPYSSDPQDIQNIVRARQKFRETELRIRNQLEDKLKDVKLA
VTTQQLTELIEDAHRSSGEIIMPQEPSMEDDDFQGGAVNSKYLDDATDVS
EETVISEDAISLTLAKQQYAEELEAEMEDEFNRGLLISKQQYDQLRFEDE
KIVALRNAKDIRELYQLAEEIIMGENYVEAPEECEEEAVVEEPEQDISSD
HEAQEPAKA*

BS12768.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-PB 209 CG46025-PB 1..209 1..209 1041 100 Plus
CG46025-PA 441 CG46025-PA 233..441 1..209 1041 100 Plus
CG46025-PC 441 CG46025-PC 233..441 1..209 1041 100 Plus
CG46025-PD 596 CG46025-PD 388..596 1..209 1041 100 Plus