Clone Sequence Records
BS12768.3prime Sequence
660 bp (660 high quality bases) assembled on 2006-10-13
> BS12768.3prime
ATGGTCTAGAAAGCTTTTAGGCTTTGGCTGGCTCCTGGGCCTCGTGATCG
GAGGAGATATCTTGTTCCGGCTCCTCCACCACCGCCTCCTCCTCGCACTC
CTCCGGTGCCTCGACGTAGTTCTCACCCATGATGATCTCCTCGGCCAGTT
GATACAGCTCGCGAATATCCTTGGCATTTCTGAGCGCCACGATCTTCTCA
TCCTCGAAGCGCAGCTGATCGTACTGCTGCTTGGAGATGAGCAGACCTCG
ATTGAACTCGTCCTCCATTTCGGCCTCCAGTTCCTCCGCGTACTGCTGCT
TGGCCAGCGTCAGGCTGATGGCATCCTCGCTGATCACCGTCTCCTCGGAG
ACATCGGTGGCATCGTCCAGATATTTGGAGTTCACTGCGCCGCCCTGGAA
GTCATCGTCCTCCATCGAAGGTTCTTGTGGCATGATGATCTCCCCGCTGG
AACGATGGGCATCCTCGATAAGTTCGGTTAGTTGTTGAGTGGTGACCGCA
AGTTTGACATCTTTTAGCTTGTCCTCCAGCTGATTGCGAATACGCAGCTC
GGTCTCCCGGAACTTTTGCCTGGCCCTGACTATATTCTGTATATCCTGGG
GATCCGAGGAGTAGGGCTGGGATATGCGCAACGAACGCTCCTTCATGTCG
ACTGATAACT
BS12768.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7196-PA | 1326 | CG7196-RA | 697..1326 | 646..17 | 3050 | 99.3 | Minus |
CG7196-PB | 630 | CG7196-RB | 1..630 | 646..17 | 3050 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 2435 | CG46025-RD | 1257..1886 | 646..17 | 3090 | 99.4 | Minus |
CG46025-RB | 1083 | CG46025-RB | 104..733 | 646..17 | 3090 | 99.4 | Minus |
CG46025-RA | 1837 | CG46025-RA | 858..1487 | 646..17 | 3090 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764753..7765155 | 571..169 | 1955 | 99 | Minus |
2L | 23513712 | 2L | 7765212..7765366 | 171..17 | 775 | 100 | Minus |
2L | 23513712 | 2L | 7764611..7764688 | 646..569 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:08:01 has no hits.
BS12768.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:21 Download gff for
BS12768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-PB | 1..630 | 17..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:48 Download gff for
BS12768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 858..1487 | 17..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:56 Download gff for
BS12768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RA | 858..1487 | 17..646 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:56 Download gff for
BS12768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7765214..7765366 | 17..169 | 100 | | Minus |
2L | 7764611..7764687 | 570..646 | 100 | -> | Minus |
2L | 7764755..7765154 | 170..569 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:48 Download gff for
BS12768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7764611..7764687 | 570..646 | 100 | -> | Minus |
arm_2L | 7764755..7765154 | 170..569 | 99 | -> | Minus |
arm_2L | 7765214..7765366 | 17..169 | 100 | | Minus |
BS12768.5prime Sequence
660 bp (660 high quality bases) assembled on 2006-10-13
> BS12768.5prime
GAAGTTATCAGTCGACATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCT
ACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAG
TTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAA
AGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGG
ATGCCCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATG
GAGGACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGA
TGCCACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCC
TGACGCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAG
GACGAGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCT
GCGCTTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTC
GCGAGCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTACGTC
GAGGCACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACA
AGATATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCTAAAAGC
TTTCTAGACC
BS12768.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7196-PA | 1326 | CG7196-RA | 697..1326 | 17..646 | 3050 | 99.3 | Plus |
CG7196-PB | 630 | CG7196-RB | 1..630 | 17..646 | 3050 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 2435 | CG46025-RD | 1257..1886 | 17..646 | 3090 | 99.4 | Plus |
CG46025-RB | 1083 | CG46025-RB | 104..733 | 17..646 | 3090 | 99.4 | Plus |
CG46025-RA | 1837 | CG46025-RA | 858..1487 | 17..646 | 3090 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764753..7765155 | 92..494 | 1955 | 99 | Plus |
2L | 23513712 | 2L | 7765212..7765366 | 492..646 | 775 | 100 | Plus |
2L | 23513712 | 2L | 7764611..7764688 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:23:40 has no hits.
BS12768.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:21 Download gff for
BS12768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-PB | 1..630 | 17..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:23 Download gff for
BS12768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 858..1487 | 17..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:12 Download gff for
BS12768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RA | 858..1487 | 17..646 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:12 Download gff for
BS12768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7764611..7764687 | 17..93 | 100 | -> | Plus |
2L | 7764755..7765154 | 94..493 | 99 | -> | Plus |
2L | 7765214..7765366 | 494..646 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:23 Download gff for
BS12768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7764611..7764687 | 17..93 | 100 | -> | Plus |
arm_2L | 7764755..7765154 | 94..493 | 99 | -> | Plus |
arm_2L | 7765214..7765366 | 494..646 | 100 | | Plus |
BS12768.complete Sequence
662 bp assembled on 2006-11-01
GenBank Submission: FJ637289
> BS12768.complete
GAAGTTATCAGTCGACATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCT
ACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAG
TTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAA
AGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGG
ATGCCCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATG
GAGGACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGA
TGCCACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCC
TGACGCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAG
GACGAGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCT
GCGCTTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTC
GCGAGCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTACGTC
GAGGCACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACA
AGATATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCTAAAAGC
TTTCTAGACCAT
BS12768.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 1791 | CG46025-PD | 1162..1791 | 17..646 | 3090 | 99.4 | Plus |
CG46025-RB | 630 | CG46025-PB | 1..630 | 17..646 | 3090 | 99.4 | Plus |
CG46025-RA | 1326 | CG46025-PA | 697..1326 | 17..646 | 3090 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 2435 | CG46025-RD | 1257..1886 | 17..646 | 3090 | 99.4 | Plus |
CG46025-RB | 1083 | CG46025-RB | 104..733 | 17..646 | 3090 | 99.4 | Plus |
CG46025-RA | 1837 | CG46025-RA | 858..1487 | 17..646 | 3090 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764753..7765155 | 92..494 | 1955 | 99 | Plus |
2L | 23513712 | 2L | 7765212..7765366 | 492..646 | 775 | 100 | Plus |
2L | 23513712 | 2L | 7764611..7764688 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:44:12 has no hits.
BS12768.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:12 Download gff for
BS12768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RB | 1..630 | 17..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:27 Download gff for
BS12768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RB | 104..733 | 17..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:38 Download gff for
BS12768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 858..1485 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:12 Download gff for
BS12768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RB | 104..733 | 17..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:30 Download gff for
BS12768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RA | 858..1485 | 17..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:30 Download gff for
BS12768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7764611..7764687 | 17..93 | 100 | -> | Plus |
2L | 7764755..7765154 | 94..493 | 99 | -> | Plus |
2L | 7765214..7765364 | 494..644 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:38 Download gff for
BS12768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7764611..7764687 | 17..93 | 100 | -> | Plus |
arm_2L | 7764755..7765154 | 94..493 | 99 | -> | Plus |
arm_2L | 7765214..7765364 | 494..644 | 100 | | Plus |
BS12768.pep Sequence
Translation from 16 to 645
> BS12768.pep
MKERSLRISQPYSSDPQDIQNIVRARQKFRETELRIRNQLEDKLKDVKLA
VTTQQLTELIEDAHRSSGEIIMPQEPSMEDDDFQGGAVNSKYLDDATDVS
EETVISEDAISLTLAKQQYAEELEAEMEDEFNRGLLISKQQYDQLRFEDE
KIVALRNAKDIRELYQLAEEIIMGENYVEAPEECEEEAVVEEPEQDISSD
HEAQEPAKA*
BS12768.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-PB | 209 | CG46025-PB | 1..209 | 1..209 | 1041 | 100 | Plus |
CG46025-PA | 441 | CG46025-PA | 233..441 | 1..209 | 1041 | 100 | Plus |
CG46025-PC | 441 | CG46025-PC | 233..441 | 1..209 | 1041 | 100 | Plus |
CG46025-PD | 596 | CG46025-PD | 388..596 | 1..209 | 1041 | 100 | Plus |