Clone Sequence Records
BS12776.3prime Sequence
447 bp (447 high quality bases) assembled on 2006-10-13
> BS12776.3prime
ATGGTCTAGAAAGCTTCTAGGGGGAATCCTCGCTGGCATACTGCTCTTCC
TGTGAGTTCTTCATCTGGCCCACGGTGTCGTAGAGCGCCACCAGCTTACG
CACGGAGCTGCCAAGGTGCTCCACGCGATGCCTGTAGGCCAGGCAGCCCT
CCAGAGCGCTGTATGTCTCCTCCCGCTGGTCACTGCTAGACATGAGCAGC
TTGAAGTTCTCCAGGATCTTGGACAGGGTCATCTCAGCCTCCGGCCTGAG
GTTGTACATCTTCTGGGTCTCCGACAAAGCCACATTCTGACTGAATGCCT
TGCTGTTGGACTCGATGTGGAGCAATGTGTTGTTCGACCGCTCCATTATC
TCGTCTATCTTAGCCAGCTGGCGGTTCATGGTCTGCCGATTGGCCGCCAT
TCCCGCCAACATTTTGTCCACAGCGTCTGACATGTCGACTGATAACT
BS12776.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13914-PA | 417 | CG13914-RA | 1..417 | 433..17 | 2085 | 100 | Minus |
CG13914-PB | 417 | CG13914-RB | 1..417 | 433..17 | 2085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-RA | 528 | CG13914-RA | 34..455 | 438..17 | 2095 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331873..1332253 | 397..17 | 1905 | 100 | Minus |
3L | 28110227 | 3L | 1331777..1331818 | 438..397 | 195 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:27:17 has no hits.
BS12776.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:27 Download gff for
BS12776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-PB | 1..417 | 17..433 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:56 Download gff for
BS12776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 27..457 | 12..447 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:05 Download gff for
BS12776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 27..457 | 12..447 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:05 Download gff for
BS12776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1331874..1332255 | 12..396 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:56 Download gff for
BS12776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1331874..1332255 | 12..396 | 99 | | Minus |
BS12776.5prime Sequence
447 bp (447 high quality bases) assembled on 2006-10-13
> BS12776.5prime
GAAGTTATCAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAA
TGGCGGCCAATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAG
ATAATGGAGCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAA
GGCATTCAGTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACC
TCAGGCCGGAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAG
CTGCTCATGTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGA
GGGCTGCCTGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGC
GTAAGCTGGTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAG
GAAGAGCAGTATGCCAGCGAGGATTCCCCCTAGAAGCTTTCTAGACC
BS12776.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13914-PA | 417 | CG13914-RA | 1..417 | 17..433 | 2085 | 100 | Plus |
CG13914-PB | 417 | CG13914-RB | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-RA | 528 | CG13914-RA | 34..455 | 12..433 | 2095 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331873..1332253 | 53..433 | 1905 | 100 | Plus |
3L | 28110227 | 3L | 1331777..1331818 | 12..53 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:00:30 has no hits.
BS12776.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:27 Download gff for
BS12776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-PB | 1..417 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:04 Download gff for
BS12776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 27..457 | 3..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:24 Download gff for
BS12776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 27..457 | 3..438 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:24 Download gff for
BS12776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1331874..1332255 | 54..438 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:04 Download gff for
BS12776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1331874..1332255 | 54..438 | 99 | | Plus |
BS12776.complete Sequence
449 bp assembled on 2006-11-01
GenBank Submission: FJ637290
> BS12776.complete
GAAGTTATCAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAA
TGGCGGCCAATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAG
ATAATGGAGCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAA
GGCATTCAGTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACC
TCAGGCCGGAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAG
CTGCTCATGTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGA
GGGCTGCCTGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGC
GTAAGCTGGTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAG
GAAGAGCAGTATGCCAGCGAGGATTCCCCCTAGAAGCTTTCTAGACCAT
BS12776.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-RA | 417 | CG13914-PA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-RA | 528 | CG13914-RA | 34..455 | 12..433 | 2095 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331873..1332253 | 53..433 | 1905 | 100 | Plus |
3L | 28110227 | 3L | 1331777..1331818 | 12..53 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:46:00 has no hits.
BS12776.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:13 Download gff for
BS12776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-RA | 1..417 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:29 Download gff for
BS12776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-RA | 42..472 | 3..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:47 Download gff for
BS12776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 39..455 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:14 Download gff for
BS12776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-RA | 42..472 | 3..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:48 Download gff for
BS12776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 39..455 | 17..433 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:48 Download gff for
BS12776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1331782..1331818 | 17..53 | 100 | -> | Plus |
3L | 1331874..1332253 | 54..433 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:47 Download gff for
BS12776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1331782..1331818 | 17..53 | 100 | -> | Plus |
arm_3L | 1331874..1332253 | 54..433 | 100 | | Plus |
BS12776.pep Sequence
Translation from 16 to 432
> BS12776.pep
MSDAVDKMLAGMAANRQTMNRQLAKIDEIMERSNNTLLHIESNSKAFSQN
VALSETQKMYNLRPEAEMTLSKILENFKLLMSSSDQREETYSALEGCLAY
RHRVEHLGSSVRKLVALYDTVGQMKNSQEEQYASEDSP*
BS12776.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-PA | 138 | CG13914-PA | 1..138 | 1..138 | 685 | 100 | Plus |