Clone BS12776 Report

Search the DGRC for BS12776

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptmsd1-RA
Protein status:BS12776.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12776.3prime Sequence

447 bp (447 high quality bases) assembled on 2006-10-13

> BS12776.3prime
ATGGTCTAGAAAGCTTCTAGGGGGAATCCTCGCTGGCATACTGCTCTTCC
TGTGAGTTCTTCATCTGGCCCACGGTGTCGTAGAGCGCCACCAGCTTACG
CACGGAGCTGCCAAGGTGCTCCACGCGATGCCTGTAGGCCAGGCAGCCCT
CCAGAGCGCTGTATGTCTCCTCCCGCTGGTCACTGCTAGACATGAGCAGC
TTGAAGTTCTCCAGGATCTTGGACAGGGTCATCTCAGCCTCCGGCCTGAG
GTTGTACATCTTCTGGGTCTCCGACAAAGCCACATTCTGACTGAATGCCT
TGCTGTTGGACTCGATGTGGAGCAATGTGTTGTTCGACCGCTCCATTATC
TCGTCTATCTTAGCCAGCTGGCGGTTCATGGTCTGCCGATTGGCCGCCAT
TCCCGCCAACATTTTGTCCACAGCGTCTGACATGTCGACTGATAACT

BS12776.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13914-PA 417 CG13914-RA 1..417 433..17 2085 100 Minus
CG13914-PB 417 CG13914-RB 1..417 433..17 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 528 CG13914-RA 34..455 438..17 2095 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331873..1332253 397..17 1905 100 Minus
3L 28110227 3L 1331777..1331818 438..397 195 97.6 Minus
Blast to na_te.dros performed on 2015-02-10 16:27:17 has no hits.

BS12776.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:27 Download gff for BS12776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13914-PB 1..417 17..433 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:56 Download gff for BS12776.3prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 27..457 12..447 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:05 Download gff for BS12776.3prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 27..457 12..447 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:05 Download gff for BS12776.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1331874..1332255 12..396 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:56 Download gff for BS12776.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1331874..1332255 12..396 99   Minus

BS12776.5prime Sequence

447 bp (447 high quality bases) assembled on 2006-10-13

> BS12776.5prime
GAAGTTATCAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAA
TGGCGGCCAATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAG
ATAATGGAGCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAA
GGCATTCAGTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACC
TCAGGCCGGAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAG
CTGCTCATGTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGA
GGGCTGCCTGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGC
GTAAGCTGGTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAG
GAAGAGCAGTATGCCAGCGAGGATTCCCCCTAGAAGCTTTCTAGACC

BS12776.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13914-PA 417 CG13914-RA 1..417 17..433 2085 100 Plus
CG13914-PB 417 CG13914-RB 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 528 CG13914-RA 34..455 12..433 2095 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331873..1332253 53..433 1905 100 Plus
3L 28110227 3L 1331777..1331818 12..53 195 97.6 Plus
Blast to na_te.dros performed on 2015-02-10 17:00:30 has no hits.

BS12776.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:27 Download gff for BS12776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13914-PB 1..417 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:04 Download gff for BS12776.5prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 27..457 3..438 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:24 Download gff for BS12776.5prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 27..457 3..438 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:24 Download gff for BS12776.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1331874..1332255 54..438 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:04 Download gff for BS12776.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1331874..1332255 54..438 99   Plus

BS12776.complete Sequence

449 bp assembled on 2006-11-01

GenBank Submission: FJ637290

> BS12776.complete
GAAGTTATCAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAA
TGGCGGCCAATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAG
ATAATGGAGCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAA
GGCATTCAGTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACC
TCAGGCCGGAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAG
CTGCTCATGTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGA
GGGCTGCCTGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGC
GTAAGCTGGTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAG
GAAGAGCAGTATGCCAGCGAGGATTCCCCCTAGAAGCTTTCTAGACCAT

BS12776.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 417 CG13914-PA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 528 CG13914-RA 34..455 12..433 2095 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331873..1332253 53..433 1905 100 Plus
3L 28110227 3L 1331777..1331818 12..53 195 97.6 Plus
Blast to na_te.dros performed on 2014-11-27 20:46:00 has no hits.

BS12776.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:13 Download gff for BS12776.complete
Subject Subject Range Query Range Percent Splice Strand
CG13914-RA 1..417 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:29 Download gff for BS12776.complete
Subject Subject Range Query Range Percent Splice Strand
CG13914-RA 42..472 3..438 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:47 Download gff for BS12776.complete
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 39..455 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:14 Download gff for BS12776.complete
Subject Subject Range Query Range Percent Splice Strand
CG13914-RA 42..472 3..438 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:48 Download gff for BS12776.complete
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 39..455 17..433 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:48 Download gff for BS12776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1331782..1331818 17..53 100 -> Plus
3L 1331874..1332253 54..433 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:47 Download gff for BS12776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1331782..1331818 17..53 100 -> Plus
arm_3L 1331874..1332253 54..433 100   Plus

BS12776.pep Sequence

Translation from 16 to 432

> BS12776.pep
MSDAVDKMLAGMAANRQTMNRQLAKIDEIMERSNNTLLHIESNSKAFSQN
VALSETQKMYNLRPEAEMTLSKILENFKLLMSSSDQREETYSALEGCLAY
RHRVEHLGSSVRKLVALYDTVGQMKNSQEEQYASEDSP*

BS12776.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-PA 138 CG13914-PA 1..138 1..138 685 100 Plus