Clone Sequence Records
BS12784.3prime Sequence
501 bp (501 high quality bases) assembled on 2006-10-13
> BS12784.3prime
ATGGTCTAGAAAGCTTTCATAGTACTCGAGGAAAGGGCAGCATGAGACGG
GCGTCCAAGGACACATCGCCGGAGGGCATGTGTTCGCGTTGCTCCCCCGA
GCTCACTCGGGGATACCTGATCCCCGTCATCATGGGCGGAGACCCGTCCA
GTTGCTGTAGCTTGAGCATCAGGGTCGACATCTTGGGCAGAGAACCCTCG
CAACTATATCCCGCCAGTATATCGGCTGCATACTGGTCTATATCCCGTCC
CAGTTGCTCCACCACCGGCTGCACCACCGAATAATGGCCATTGAGGCTGC
TAAAGAATCCATGTCGTGATCCTGCCTCCAGGACGTCGGTGACCACGGGA
CGGATGCGGTGCAGCGGCAGCCTGTAGACGTCGGCCACTCTTTCCGCCAC
CTCGTAACTGGTCGCCGGGCGACCCAGCACCTTCAACACTTCCAACACCA
GAGCCCCATTCTGTCTGCCCAGATTAGTGGGAATCATGTCGACTGATAAC
T
BS12784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31407-PA | 471 | CG31407-RA | 1..471 | 487..17 | 2330 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31407-RB | 778 | CG31407-RB | 196..668 | 487..15 | 2350 | 99.8 | Minus |
| CG31407-RA | 764 | CG31407-RA | 182..654 | 487..15 | 2350 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10022955..10023427 | 15..487 | 2350 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:49:39 has no hits.
BS12784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:30 Download gff for
BS12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-PA | 1..471 | 17..487 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:09 Download gff for
BS12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 180..659 | 8..490 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:21 Download gff for
BS12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 180..659 | 8..490 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:21 Download gff for
BS12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10022950..10023429 | 8..490 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:09 Download gff for
BS12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5848672..5849151 | 8..490 | 98 | | Plus |
BS12784.5prime Sequence
501 bp (501 high quality bases) assembled on 2006-10-13
> BS12784.5prime
GAAGTTATCAGTCGACATGATTCCCACTAATCTGGGCAGACAGAATGGGG
CTCTGGTGTTGGAAGTGTTGAAGGTGCTGGGTCGCCCGGCGACCAGTTAC
GAGGTGGCGGAAAGAGTGGCCGACGTCTACAGGCTGCCGCTGCACCGCAT
CCGTCCCGTGGTCACCGACGTCCTGGAGGCAGGATCACGACATGGATTCT
TTAGCAGCCTCAATGGCCATTATTCGGTGGTGCAGCCGGTGGTGGAGCAA
CTGGGACGGGATATAGACCAGTATGCAGCCGATATACTGGCGGGATATAG
TTGCGAGGGTTCTCTGCCCAAGATGTCGACCCTGATGCTCAAGCTACAGC
AACTGGACGGGTCTCCGCCCATGATGACGGGGATCAGGTATCCCCGAGTG
AGCTCGGGGGAGCAACGCGAACACATGCCCTCCGGCGATGTGTCCTTGGA
CGCCCGTCTCATGCTGCCCTTTCCTCGAGTACTATGAAAGCTTTCTAGAC
C
BS12784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31407-PA | 471 | CG31407-RA | 1..471 | 17..487 | 2330 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31407-RB | 778 | CG31407-RB | 196..668 | 17..489 | 2350 | 99.8 | Plus |
| CG31407-RA | 764 | CG31407-RA | 182..654 | 17..489 | 2350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10022955..10023427 | 489..17 | 2350 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:11:21 has no hits.
BS12784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:31 Download gff for
BS12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-PA | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:55 Download gff for
BS12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 180..659 | 14..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:40 Download gff for
BS12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 180..659 | 14..496 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:40 Download gff for
BS12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10022950..10023429 | 14..496 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:55 Download gff for
BS12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5848672..5849151 | 14..496 | 98 | | Minus |
BS12784.complete Sequence
503 bp assembled on 2006-11-01
GenBank Submission: FJ637291
> BS12784.complete
GAAGTTATCAGTCGACATGATTCCCACTAATCTGGGCAGACAGAATGGGG
CTCTGGTGTTGGAAGTGTTGAAGGTGCTGGGTCGCCCGGCGACCAGTTAC
GAGGTGGCGGAAAGAGTGGCCGACGTCTACAGGCTGCCGCTGCACCGCAT
CCGTCCCGTGGTCACCGACGTCCTGGAGGCAGGATCACGACATGGATTCT
TTAGCAGCCTCAATGGCCATTATTCGGTGGTGCAGCCGGTGGTGGAGCAA
CTGGGACGGGATATAGACCAGTATGCAGCCGATATACTGGCGGGATATAG
TTGCGAGGGTTCTCTGCCCAAGATGTCGACCCTGATGCTCAAGCTACAGC
AACTGGACGGGTCTCCGCCCATGATGACGGGGATCAGGTATCCCCGAGTG
AGCTCGGGGGAGCAACGCGAACACATGCCCTCCGGCGATGTGTCCTTGGA
CGCCCGTCTCATGCTGCCCTTTCCTCGAGTACTATGAAAGCTTTCTAGAC
CAT
BS12784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31407-RB | 471 | CG31407-PB | 1..471 | 17..487 | 2340 | 99.8 | Plus |
| CG31407-RA | 471 | CG31407-PA | 1..471 | 17..487 | 2340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31407-RB | 778 | CG31407-RB | 196..668 | 17..489 | 2350 | 99.8 | Plus |
| CG31407-RA | 764 | CG31407-RA | 182..654 | 17..489 | 2350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10022955..10023427 | 489..17 | 2350 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:16:41 has no hits.
BS12784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:15 Download gff for
BS12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:30 Download gff for
BS12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 180..659 | 14..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:17:48 Download gff for
BS12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 182..651 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:15 Download gff for
BS12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 180..659 | 14..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:42 Download gff for
BS12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31407-RA | 182..651 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:42 Download gff for
BS12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10022958..10023427 | 17..486 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:17:48 Download gff for
BS12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5848680..5849149 | 17..486 | 99 | | Minus |
BS12784.pep Sequence
Translation from 16 to 486
> BS12784.pep
MIPTNLGRQNGALVLEVLKVLGRPATSYEVAERVADVYRLPLHRIRPVVT
DVLEAGSRHGFFSSLNGHYSVVQPVVEQLGRDIDQYAADILAGYSCEGSL
PKMSTLMLKLQQLDGSPPMMTGIRYPRVSSGEQREHMPSGDVSLDARLML
PFPRVL*
BS12784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31407-PB | 156 | CG31407-PB | 1..156 | 1..156 | 796 | 100 | Plus |
| CG31407-PA | 156 | CG31407-PA | 1..156 | 1..156 | 796 | 100 | Plus |
