Clone Sequence Records
BS12785.5prime Sequence
495 bp (495 high quality bases) assembled on 2006-10-13
> BS12785.5prime
GAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTAC
ACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATC
GACACCGAGAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAA
AGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCA
AATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGC
ACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCT
ATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGT
GCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCG
CCGGACAACACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGAC
TAAATGGTGGTACCACGATGATTCTGTTTAGAAGCTTTCTAGACC
BS12785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-PD | 465 | CG7220-RD | 1..465 | 17..481 | 2325 | 100 | Plus |
CG7220-PA | 465 | CG7220-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
CG7220-PC | 465 | CG7220-RC | 1..465 | 17..481 | 2325 | 100 | Plus |
CG7220-PB | 420 | CG7220-RB | 1..420 | 62..481 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-RC | 1672 | CG7220-RC | 208..672 | 17..481 | 2325 | 100 | Plus |
CG7220-RA | 1771 | CG7220-RA | 307..771 | 17..481 | 2325 | 100 | Plus |
CG7220-RD | 1742 | CG7220-RD | 278..742 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10737058..10737291 | 234..467 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 10736893..10736997 | 133..237 | 525 | 100 | Plus |
2R | 25286936 | 2R | 10736655..10736748 | 39..132 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:36:52 has no hits.
BS12785.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:31 Download gff for
BS12785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-PC | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:26 Download gff for
BS12785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 306..778 | 10..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:46 Download gff for
BS12785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 272..744 | 10..487 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:46 Download gff for
BS12785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10737060..10737291 | 236..467 | 100 | -> | Plus |
2R | 10736657..10736748 | 41..132 | 100 | -> | Plus |
2R | 10736893..10736995 | 133..235 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:26 Download gff for
BS12785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6624162..6624253 | 41..132 | 100 | -> | Plus |
arm_2R | 6624398..6624500 | 133..235 | 100 | -> | Plus |
arm_2R | 6624565..6624796 | 236..467 | 100 | -> | Plus |
BS12785.3prime Sequence
495 bp (495 high quality bases) assembled on 2006-10-13
> BS12785.3prime
ATGGTCTAGAAAGCTTCTAAACAGAATCATCGTGGTACCACCATTTAGTC
TTTTTAGGATTCTTATTACAGGTTTTTACGTATATCGTGTTGTCCGGCGG
ACGCTTCTTTTCGCGACAACTACTCAACATGGAGGCTATGCTAAGGCACA
CGGACTGCACGGACAGCGCCGGGGACCAGTCCTCGGTCAGAATGGATAGG
CAGATGTGTCCGTTGCTGTAGACATGCGGATGCACCGGTATATTGGTGCC
GATGAAGGTCACCTCTGGCGAATCGAACGGATATTTATTGTTGAATTTGA
AAAGTAGCTGGAAGTCCTCGCCCTCGTAAAGTGTGCCCTCGAAACCTTTA
ATGTTTATTTTCCATTCGGATAAATTTTGTTGTACGCTCTCGGTGTCGAT
GGTTACGCCTGGTGGCGGCTCCTTGATCAGGGACATCAGCTCTTTGTGTA
GGCGGCGCTCGCTTGGCGACTTCGAAGACATGTCGACTGATAACT
BS12785.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-PC | 465 | CG7220-RC | 1..465 | 481..17 | 2325 | 100 | Minus |
CG7220-PD | 465 | CG7220-RD | 1..465 | 481..17 | 2325 | 100 | Minus |
CG7220-PA | 465 | CG7220-RA | 1..465 | 481..17 | 2325 | 100 | Minus |
CG7220-PB | 420 | CG7220-RB | 1..420 | 436..17 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-RC | 1672 | CG7220-RC | 208..672 | 481..17 | 2325 | 100 | Minus |
CG7220-RA | 1771 | CG7220-RA | 307..771 | 481..17 | 2325 | 100 | Minus |
CG7220-RD | 1742 | CG7220-RD | 278..742 | 481..17 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10737058..10737291 | 264..31 | 1170 | 100 | Minus |
2R | 25286936 | 2R | 10736893..10736997 | 365..261 | 525 | 100 | Minus |
2R | 25286936 | 2R | 10736655..10736748 | 459..366 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:41:49 has no hits.
BS12785.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:31 Download gff for
BS12785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-PC | 1..465 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:33:00 Download gff for
BS12785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 306..778 | 11..488 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:34 Download gff for
BS12785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 272..744 | 11..488 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:34 Download gff for
BS12785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10736657..10736748 | 366..457 | 100 | -> | Minus |
2R | 10736893..10736995 | 263..365 | 100 | -> | Minus |
2R | 10737060..10737291 | 31..262 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:33:00 Download gff for
BS12785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6624162..6624253 | 366..457 | 100 | -> | Minus |
arm_2R | 6624398..6624500 | 263..365 | 100 | -> | Minus |
arm_2R | 6624565..6624796 | 31..262 | 100 | -> | Minus |
BS12785.complete Sequence
497 bp assembled on 2007-10-17
GenBank Submission: FJ637292
> BS12785.complete
GAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTAC
ACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATC
GACACCGAGAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAA
AGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCA
AATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGC
ACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCT
ATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGT
GCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCG
CCGGACAACACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGAC
TAAATGGTGGTACCACGATGATTCTGTTTAGAAGCTTTCTAGACCAT
BS12785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-RC | 465 | CG7220-PC | 1..465 | 17..481 | 2325 | 100 | Plus |
CG7220-RA | 465 | CG7220-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
CG7220-RD | 465 | CG7220-PD | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-RC | 1672 | CG7220-RC | 208..672 | 17..481 | 2325 | 100 | Plus |
CG7220-RA | 1771 | CG7220-RA | 307..771 | 17..481 | 2325 | 100 | Plus |
CG7220-RD | 1742 | CG7220-RD | 278..742 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10737058..10737291 | 234..467 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 10736893..10736997 | 133..237 | 525 | 100 | Plus |
2R | 25286936 | 2R | 10736655..10736748 | 39..132 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:00:28 has no hits.
BS12785.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:23 Download gff for
BS12785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RC | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:17 Download gff for
BS12785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 306..778 | 10..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:51 Download gff for
BS12785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 312..776 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:47 Download gff for
BS12785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 312..776 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:10 Download gff for
BS12785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 278..742 | 17..481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:10 Download gff for
BS12785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10731773..10731796 | 17..40 | 100 | -> | Plus |
2R | 10736657..10736748 | 41..132 | 100 | -> | Plus |
2R | 10736893..10736995 | 133..235 | 100 | -> | Plus |
2R | 10737060..10737291 | 236..467 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:51 Download gff for
BS12785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6619278..6619301 | 17..40 | 100 | -> | Plus |
arm_2R | 6624162..6624253 | 41..132 | 100 | -> | Plus |
arm_2R | 6624398..6624500 | 133..235 | 100 | -> | Plus |
arm_2R | 6624565..6624796 | 236..467 | 100 | -> | Plus |
BS12785.pep Sequence
Translation from 16 to 480
> BS12785.pep
MSSKSPSERRLHKELMSLIKEPPPGVTIDTESVQQNLSEWKINIKGFEGT
LYEGEDFQLLFKFNNKYPFDSPEVTFIGTNIPVHPHVYSNGHICLSILTE
DWSPALSVQSVCLSIASMLSSCREKKRPPDNTIYVKTCNKNPKKTKWWYH
DDSV*
BS12785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-PC | 154 | CG7220-PC | 1..154 | 1..154 | 836 | 100 | Plus |
CG7220-PA | 154 | CG7220-PA | 1..154 | 1..154 | 836 | 100 | Plus |
CG7220-PD | 154 | CG7220-PD | 1..154 | 1..154 | 836 | 100 | Plus |
CG7220-PE | 190 | CG7220-PE | 44..190 | 8..154 | 803 | 100 | Plus |
CG7220-PF | 190 | CG7220-PF | 44..190 | 8..154 | 803 | 100 | Plus |