Clone BS12785 Report

Search the DGRC for BS12785

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG7220-RA
Protein status:BS12785.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12785.5prime Sequence

495 bp (495 high quality bases) assembled on 2006-10-13

> BS12785.5prime
GAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTAC
ACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATC
GACACCGAGAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAA
AGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCA
AATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGC
ACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCT
ATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGT
GCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCG
CCGGACAACACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGAC
TAAATGGTGGTACCACGATGATTCTGTTTAGAAGCTTTCTAGACC

BS12785.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-PD 465 CG7220-RD 1..465 17..481 2325 100 Plus
CG7220-PA 465 CG7220-RA 1..465 17..481 2325 100 Plus
CG7220-PC 465 CG7220-RC 1..465 17..481 2325 100 Plus
CG7220-PB 420 CG7220-RB 1..420 62..481 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RC 1672 CG7220-RC 208..672 17..481 2325 100 Plus
CG7220-RA 1771 CG7220-RA 307..771 17..481 2325 100 Plus
CG7220-RD 1742 CG7220-RD 278..742 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10737058..10737291 234..467 1170 100 Plus
2R 25286936 2R 10736893..10736997 133..237 525 100 Plus
2R 25286936 2R 10736655..10736748 39..132 470 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:36:52 has no hits.

BS12785.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:31 Download gff for BS12785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-PC 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:26 Download gff for BS12785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 306..778 10..487 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:46 Download gff for BS12785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 272..744 10..487 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:46 Download gff for BS12785.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10737060..10737291 236..467 100 -> Plus
2R 10736657..10736748 41..132 100 -> Plus
2R 10736893..10736995 133..235 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:26 Download gff for BS12785.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6624162..6624253 41..132 100 -> Plus
arm_2R 6624398..6624500 133..235 100 -> Plus
arm_2R 6624565..6624796 236..467 100 -> Plus

BS12785.3prime Sequence

495 bp (495 high quality bases) assembled on 2006-10-13

> BS12785.3prime
ATGGTCTAGAAAGCTTCTAAACAGAATCATCGTGGTACCACCATTTAGTC
TTTTTAGGATTCTTATTACAGGTTTTTACGTATATCGTGTTGTCCGGCGG
ACGCTTCTTTTCGCGACAACTACTCAACATGGAGGCTATGCTAAGGCACA
CGGACTGCACGGACAGCGCCGGGGACCAGTCCTCGGTCAGAATGGATAGG
CAGATGTGTCCGTTGCTGTAGACATGCGGATGCACCGGTATATTGGTGCC
GATGAAGGTCACCTCTGGCGAATCGAACGGATATTTATTGTTGAATTTGA
AAAGTAGCTGGAAGTCCTCGCCCTCGTAAAGTGTGCCCTCGAAACCTTTA
ATGTTTATTTTCCATTCGGATAAATTTTGTTGTACGCTCTCGGTGTCGAT
GGTTACGCCTGGTGGCGGCTCCTTGATCAGGGACATCAGCTCTTTGTGTA
GGCGGCGCTCGCTTGGCGACTTCGAAGACATGTCGACTGATAACT

BS12785.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-PC 465 CG7220-RC 1..465 481..17 2325 100 Minus
CG7220-PD 465 CG7220-RD 1..465 481..17 2325 100 Minus
CG7220-PA 465 CG7220-RA 1..465 481..17 2325 100 Minus
CG7220-PB 420 CG7220-RB 1..420 436..17 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RC 1672 CG7220-RC 208..672 481..17 2325 100 Minus
CG7220-RA 1771 CG7220-RA 307..771 481..17 2325 100 Minus
CG7220-RD 1742 CG7220-RD 278..742 481..17 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10737058..10737291 264..31 1170 100 Minus
2R 25286936 2R 10736893..10736997 365..261 525 100 Minus
2R 25286936 2R 10736655..10736748 459..366 470 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:41:49 has no hits.

BS12785.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:31 Download gff for BS12785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-PC 1..465 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:33:00 Download gff for BS12785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 306..778 11..488 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:34 Download gff for BS12785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 272..744 11..488 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:34 Download gff for BS12785.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10736657..10736748 366..457 100 -> Minus
2R 10736893..10736995 263..365 100 -> Minus
2R 10737060..10737291 31..262 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:33:00 Download gff for BS12785.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6624162..6624253 366..457 100 -> Minus
arm_2R 6624398..6624500 263..365 100 -> Minus
arm_2R 6624565..6624796 31..262 100 -> Minus

BS12785.complete Sequence

497 bp assembled on 2007-10-17

GenBank Submission: FJ637292

> BS12785.complete
GAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTAC
ACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATC
GACACCGAGAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAA
AGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCA
AATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGC
ACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCT
ATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGT
GCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCG
CCGGACAACACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGAC
TAAATGGTGGTACCACGATGATTCTGTTTAGAAGCTTTCTAGACCAT

BS12785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RC 465 CG7220-PC 1..465 17..481 2325 100 Plus
CG7220-RA 465 CG7220-PA 1..465 17..481 2325 100 Plus
CG7220-RD 465 CG7220-PD 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RC 1672 CG7220-RC 208..672 17..481 2325 100 Plus
CG7220-RA 1771 CG7220-RA 307..771 17..481 2325 100 Plus
CG7220-RD 1742 CG7220-RD 278..742 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10737058..10737291 234..467 1170 100 Plus
2R 25286936 2R 10736893..10736997 133..237 525 100 Plus
2R 25286936 2R 10736655..10736748 39..132 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:00:28 has no hits.

BS12785.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:23 Download gff for BS12785.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RC 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:17 Download gff for BS12785.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 306..778 10..487 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:51 Download gff for BS12785.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 312..776 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:47 Download gff for BS12785.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 312..776 17..481 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:10 Download gff for BS12785.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 278..742 17..481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:10 Download gff for BS12785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10731773..10731796 17..40 100 -> Plus
2R 10736657..10736748 41..132 100 -> Plus
2R 10736893..10736995 133..235 100 -> Plus
2R 10737060..10737291 236..467 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:51 Download gff for BS12785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6619278..6619301 17..40 100 -> Plus
arm_2R 6624162..6624253 41..132 100 -> Plus
arm_2R 6624398..6624500 133..235 100 -> Plus
arm_2R 6624565..6624796 236..467 100 -> Plus

BS12785.pep Sequence

Translation from 16 to 480

> BS12785.pep
MSSKSPSERRLHKELMSLIKEPPPGVTIDTESVQQNLSEWKINIKGFEGT
LYEGEDFQLLFKFNNKYPFDSPEVTFIGTNIPVHPHVYSNGHICLSILTE
DWSPALSVQSVCLSIASMLSSCREKKRPPDNTIYVKTCNKNPKKTKWWYH
DDSV*

BS12785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-PC 154 CG7220-PC 1..154 1..154 836 100 Plus
CG7220-PA 154 CG7220-PA 1..154 1..154 836 100 Plus
CG7220-PD 154 CG7220-PD 1..154 1..154 836 100 Plus
CG7220-PE 190 CG7220-PE 44..190 8..154 803 100 Plus
CG7220-PF 190 CG7220-PF 44..190 8..154 803 100 Plus