Clone BS12786 Report

Search the DGRC for BS12786

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCkIIbeta2-RA
Protein status:BS12786.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12786.3prime Sequence

690 bp (690 high quality bases) assembled on 2006-10-13

> BS12786.3prime
ATGGTCTAGAAAGCTTTCAGATGTGGGATGGGCTATCGATTTCTCCTACT
GGCGTCATTGTCACATCTTTTTGGATCTCAGCGGCAGTACGGTAGGCCGT
GGGGTGGATTTTAAAGCCATAAAGCCTGGGCACAAACTTCTGCTTTGCCC
GCTTGGGCCTAGCATCCGGTTTCTCCATAAAGAACATATGAGGGAATCCA
GTGCCAAAGAAGGCTCCATCCAGATTCGAATGTCTCGACGCCTTGGGAAT
GTACACATCATTGCACTTGGGGCAATAGATGCGTACCATATCCTCGCCAG
GATTATCACTCAAACCAATGGGCAGCACCGGCTGGCTATGGCAGAATGCA
CGTGGACATGTCCCGAATTCGCCCTTGTTGTACTTGTCCAACATCAGTTC
GATGCCCCGGTTGGTTAGGATAAAACGAGCGTGGATCAAGCCATACAGTT
TCTCTGCACTAGCCTCCAGTTCTGGTTCAGCGGGGTCTTCCGAGGCTGAA
CCCGGATTGAGATCCAGGATCACCTCCAAGGCACATTTGTAGTTCTTAAC
GTTCGAATCAAGAAAGTTAAGGTTAAACTTGTCCTGGATATATTCCTCAT
CCACCTCGCAAAAGAATTCGTTGCCACGCTGCTTGCAAAACCAATGAATC
CAGGAAGATTCGTCCGAATCGGTCATGTCGACTGATAACT

BS12786.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8914-PA 660 CkIIbeta2-RA 1..656 676..21 3130 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-RA 912 CG8914-RA 135..794 676..17 3195 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20289679..20290230 676..125 2670 98.9 Minus
2R 25286936 2R 20290319..20290432 130..17 555 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 17:01:49 has no hits.

BS12786.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:32 Download gff for BS12786.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8914-PA 1..660 17..676 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:14 Download gff for BS12786.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 130..798 12..684 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:32 Download gff for BS12786.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 130..798 12..684 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:32 Download gff for BS12786.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20290324..20290436 12..125 96   Minus
2R 20289674..20290229 126..684 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:14 Download gff for BS12786.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16177179..16177734 126..684 98 -> Minus
arm_2R 16177829..16177941 12..125 96   Minus

BS12786.5prime Sequence

690 bp (690 high quality bases) assembled on 2006-10-13

> BS12786.5prime
GAAGTTATCAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATT
GGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAA
TATATCCAGGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAA
CTACAAATGTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCT
CGGAAGACCCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTAT
GGCTTGATCCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGAT
GTTGGACAAGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCT
GCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAG
GATATGGTACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAA
GGCGTCGAGACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCC
CTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAG
CAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTA
CCGTACTGCCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAG
AAATCGATAGCCCATCCCACATCTGAAAGCTTTCTAGACC

BS12786.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8914-PA 660 CkIIbeta2-RA 1..656 17..672 3130 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-RA 912 CG8914-RA 135..794 17..676 3195 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20289679..20290230 17..568 2670 98.9 Plus
2R 25286936 2R 20290319..20290432 563..676 555 99.1 Plus
Blast to na_te.dros performed on 2015-02-11 09:11:27 has no hits.

BS12786.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:32 Download gff for BS12786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8914-PA 1..660 17..676 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:59 Download gff for BS12786.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 130..798 9..681 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:58 Download gff for BS12786.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 130..798 9..681 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:58 Download gff for BS12786.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20289674..20290229 9..567 98 -> Plus
2R 20290324..20290436 568..681 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:59 Download gff for BS12786.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16177179..16177734 9..567 98 -> Plus
arm_2R 16177829..16177941 568..681 96   Plus

BS12786.complete Sequence

692 bp assembled on 2006-11-01

GenBank Submission: FJ637293

> BS12786.complete
GAAGTTATCAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATT
GGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAA
TATATCCAGGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAA
CTACAAATGTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCT
CGGAAGACCCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTAT
GGCTTGATCCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGAT
GTTGGACAAGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCT
GCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAG
GATATGGTACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAA
GGCGTCGAGACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCC
CTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAG
CAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTA
CCGTACTGCCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAG
AAATCGATAGCCCATCCCACATCTGAAAGCTTTCTAGACCAT

BS12786.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-RA 660 CG8914-PA 1..660 17..676 3195 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-RA 912 CG8914-RA 135..794 17..676 3195 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20289679..20290230 17..568 2670 98.9 Plus
2R 25286936 2R 20290319..20290432 563..676 555 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 14:32:28 has no hits.

BS12786.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:12 Download gff for BS12786.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 1..660 17..676 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:05 Download gff for BS12786.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 48..716 9..681 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:47 Download gff for BS12786.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 135..793 17..675 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:12 Download gff for BS12786.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 48..716 9..681 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:36 Download gff for BS12786.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 135..793 17..675 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:36 Download gff for BS12786.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20289679..20290229 17..567 98 -> Plus
2R 20290324..20290431 568..675 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:47 Download gff for BS12786.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16177184..16177734 17..567 98 -> Plus
arm_2R 16177829..16177936 568..675 99   Plus

BS12786.pep Sequence

Translation from 16 to 675

> BS12786.pep
MTDSDESSWIHWFCKQRGNEFFCEVDEEYIQDKFNLNFLDSNVKNYKCAL
EVILDLNPGSASEDPAEPELEASAEKLYGLIHARFILTNRGIELMLDKYN
KGEFGTCPRAFCHSQPVLPIGLSDNPGEDMVRIYCPKCNDVYIPKASRHS
NLDGAFFGTGFPHMFFMEKPDARPKRAKQKFVPRLYGFKIHPTAYRTAAE
IQKDVTMTPVGEIDSPSHI*

BS12786.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-PA 219 CG8914-PA 1..219 1..219 1194 100 Plus
CkIIbeta-PH 215 CG15224-PH 1..198 1..196 695 64.1 Plus
CkIIbeta-PG 215 CG15224-PG 1..198 1..196 695 64.1 Plus
CkIIbeta-PD 215 CG15224-PD 1..198 1..196 695 64.1 Plus
CkIIbeta-PC 215 CG15224-PC 1..198 1..196 695 64.1 Plus