Clone Sequence Records
BS12786.3prime Sequence
690 bp (690 high quality bases) assembled on 2006-10-13
> BS12786.3prime
ATGGTCTAGAAAGCTTTCAGATGTGGGATGGGCTATCGATTTCTCCTACT
GGCGTCATTGTCACATCTTTTTGGATCTCAGCGGCAGTACGGTAGGCCGT
GGGGTGGATTTTAAAGCCATAAAGCCTGGGCACAAACTTCTGCTTTGCCC
GCTTGGGCCTAGCATCCGGTTTCTCCATAAAGAACATATGAGGGAATCCA
GTGCCAAAGAAGGCTCCATCCAGATTCGAATGTCTCGACGCCTTGGGAAT
GTACACATCATTGCACTTGGGGCAATAGATGCGTACCATATCCTCGCCAG
GATTATCACTCAAACCAATGGGCAGCACCGGCTGGCTATGGCAGAATGCA
CGTGGACATGTCCCGAATTCGCCCTTGTTGTACTTGTCCAACATCAGTTC
GATGCCCCGGTTGGTTAGGATAAAACGAGCGTGGATCAAGCCATACAGTT
TCTCTGCACTAGCCTCCAGTTCTGGTTCAGCGGGGTCTTCCGAGGCTGAA
CCCGGATTGAGATCCAGGATCACCTCCAAGGCACATTTGTAGTTCTTAAC
GTTCGAATCAAGAAAGTTAAGGTTAAACTTGTCCTGGATATATTCCTCAT
CCACCTCGCAAAAGAATTCGTTGCCACGCTGCTTGCAAAACCAATGAATC
CAGGAAGATTCGTCCGAATCGGTCATGTCGACTGATAACT
BS12786.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8914-PA | 660 | CkIIbeta2-RA | 1..656 | 676..21 | 3130 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-RA | 912 | CG8914-RA | 135..794 | 676..17 | 3195 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20289679..20290230 | 676..125 | 2670 | 98.9 | Minus |
2R | 25286936 | 2R | 20290319..20290432 | 130..17 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:01:49 has no hits.
BS12786.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:32 Download gff for
BS12786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8914-PA | 1..660 | 17..676 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:14 Download gff for
BS12786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 130..798 | 12..684 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:32 Download gff for
BS12786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 130..798 | 12..684 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:32 Download gff for
BS12786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20290324..20290436 | 12..125 | 96 | | Minus |
2R | 20289674..20290229 | 126..684 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:14 Download gff for
BS12786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16177179..16177734 | 126..684 | 98 | -> | Minus |
arm_2R | 16177829..16177941 | 12..125 | 96 | | Minus |
BS12786.5prime Sequence
690 bp (690 high quality bases) assembled on 2006-10-13
> BS12786.5prime
GAAGTTATCAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATT
GGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAA
TATATCCAGGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAA
CTACAAATGTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCT
CGGAAGACCCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTAT
GGCTTGATCCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGAT
GTTGGACAAGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCT
GCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAG
GATATGGTACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAA
GGCGTCGAGACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCC
CTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAG
CAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTA
CCGTACTGCCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAG
AAATCGATAGCCCATCCCACATCTGAAAGCTTTCTAGACC
BS12786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8914-PA | 660 | CkIIbeta2-RA | 1..656 | 17..672 | 3130 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-RA | 912 | CG8914-RA | 135..794 | 17..676 | 3195 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20289679..20290230 | 17..568 | 2670 | 98.9 | Plus |
2R | 25286936 | 2R | 20290319..20290432 | 563..676 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:11:27 has no hits.
BS12786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:32 Download gff for
BS12786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8914-PA | 1..660 | 17..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:59 Download gff for
BS12786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 130..798 | 9..681 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:58 Download gff for
BS12786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 130..798 | 9..681 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:58 Download gff for
BS12786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20289674..20290229 | 9..567 | 98 | -> | Plus |
2R | 20290324..20290436 | 568..681 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:59 Download gff for
BS12786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16177179..16177734 | 9..567 | 98 | -> | Plus |
arm_2R | 16177829..16177941 | 568..681 | 96 | | Plus |
BS12786.complete Sequence
692 bp assembled on 2006-11-01
GenBank Submission: FJ637293
> BS12786.complete
GAAGTTATCAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATT
GGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAA
TATATCCAGGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAA
CTACAAATGTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCT
CGGAAGACCCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTAT
GGCTTGATCCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGAT
GTTGGACAAGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCT
GCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAG
GATATGGTACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAA
GGCGTCGAGACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCC
CTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAG
CAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTA
CCGTACTGCCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAG
AAATCGATAGCCCATCCCACATCTGAAAGCTTTCTAGACCAT
BS12786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-RA | 660 | CG8914-PA | 1..660 | 17..676 | 3195 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-RA | 912 | CG8914-RA | 135..794 | 17..676 | 3195 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20289679..20290230 | 17..568 | 2670 | 98.9 | Plus |
2R | 25286936 | 2R | 20290319..20290432 | 563..676 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:28 has no hits.
BS12786.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:12 Download gff for
BS12786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 1..660 | 17..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:05 Download gff for
BS12786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 48..716 | 9..681 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:47 Download gff for
BS12786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 135..793 | 17..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:12 Download gff for
BS12786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 48..716 | 9..681 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:36 Download gff for
BS12786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 135..793 | 17..675 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:36 Download gff for
BS12786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20289679..20290229 | 17..567 | 98 | -> | Plus |
2R | 20290324..20290431 | 568..675 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:47 Download gff for
BS12786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16177184..16177734 | 17..567 | 98 | -> | Plus |
arm_2R | 16177829..16177936 | 568..675 | 99 | | Plus |
BS12786.pep Sequence
Translation from 16 to 675
> BS12786.pep
MTDSDESSWIHWFCKQRGNEFFCEVDEEYIQDKFNLNFLDSNVKNYKCAL
EVILDLNPGSASEDPAEPELEASAEKLYGLIHARFILTNRGIELMLDKYN
KGEFGTCPRAFCHSQPVLPIGLSDNPGEDMVRIYCPKCNDVYIPKASRHS
NLDGAFFGTGFPHMFFMEKPDARPKRAKQKFVPRLYGFKIHPTAYRTAAE
IQKDVTMTPVGEIDSPSHI*
BS12786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-PA | 219 | CG8914-PA | 1..219 | 1..219 | 1194 | 100 | Plus |
CkIIbeta-PH | 215 | CG15224-PH | 1..198 | 1..196 | 695 | 64.1 | Plus |
CkIIbeta-PG | 215 | CG15224-PG | 1..198 | 1..196 | 695 | 64.1 | Plus |
CkIIbeta-PD | 215 | CG15224-PD | 1..198 | 1..196 | 695 | 64.1 | Plus |
CkIIbeta-PC | 215 | CG15224-PC | 1..198 | 1..196 | 695 | 64.1 | Plus |