Clone Sequence Records
BS12789.3prime Sequence
765 bp (711 high quality bases) assembled on 2006-10-13
> BS12789.3prime
ATGGTCTAGAAAGCTTTCACTTTATTTCTAAATCAGAATCCTGGATTTGC
TGAAGCACCGGCACCAGAGAGGCGAGTTCCGTGAGCAACAAAGGGTCCCG
CACAAGCCCGTCGTCAATGCCGCGGACAAGCTGCTCCATTTCAAACAGAA
AGCGCCAGTCTTCCGCCTGCAGGTACCTGGATTTACCGTGGGTCTCCTGA
CTAGACTTTCTGAAGATGAGACGGTCAGACTGAAAGCTTCGCTCGGTTCG
TACACAACAGCGATGGGTGTCAACATATTCCTTGTTGCATTGCAGACACA
CCGTGTCCCTTATATCCTTCTGGTCCTCCGTCGGAGTATTTGGTGTTCCA
TGCTGGCAGCAGGTGAGGCGCCGTTGTAGGGCGCCCAGATGCGTGTAGCC
TTTTTTGCACACATGCCTCCCCAAAGTGATGGCGGACTGACTATCCCTGA
TGGCTGGATGCCTCAGCCGACATCTGTGGGCCACCAGCGCTGACTTCAGT
TGAAACTGCTTCTGGCAGTACTCGCACGTAAGGTGTCCTGTCATGTGCTT
CTCCTGGTAGTGGCGGCGGAGCCTTCCAATTTGCCGAAAATTCTGTACTC
CGGGTCCATGCTTGTGGAATCTGCAATCGCTGCGTGGACAGTGGAAGCAG
TTGACCAACTGGTGATCCGGAACAGGTAACTTGTGGGTGCATACAATGTG
GTTGTGGTAGCGGACAAGACTCTTGTACACCTTGCCACACCACTTCGCAA
CAGAAGCAAGCTCAT
BS12789.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14451-PA | 795 | CG14451-RA | 47..795 | 765..17 | 3670 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14451-RA | 862 | CG14451-RA | 97..845 | 765..17 | 3700 | 99.7 | Minus |
| mael-RD | 2143 | CG11254-RD | 45..273 | 17..245 | 1145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22721247..22721986 | 17..757 | 3655 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:18:45 has no hits.
BS12789.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:34 Download gff for
BS12789.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-PA | 47..795 | 17..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:45:18 Download gff for
BS12789.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-RA | 97..849 | 11..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:34:46 Download gff for
BS12789.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-RA | 97..849 | 11..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:34:46 Download gff for
BS12789.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22721243..22721995 | 11..765 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:45:18 Download gff for
BS12789.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22714343..22715095 | 11..765 | 99 | | Plus |
BS12789.5prime Sequence
709 bp (542 high quality bases) assembled on 2006-10-13
> BS12789.5prime
GAAGTTATCATTCGACATGGAGAACAGGAGGTGCACCGTCGTTGCCGTGG
GTGACCTTGTGGATGAGCTTGGCTTCTGTTGCGAGTGGTGTGGCAAGGTG
TACAAGAGTCTTGTCCGCTACCACAACCACATTGTATGCACCCACAAGTT
ACCTGTTCCGGATCACCAGTTGGTCAACTGCTTCCACTGTCCACGCAGCG
ATTGCAGATTCCACAAGCATGGACCCGGAGTACAGAATTTTCGGCAAATT
GGAAGGCTCCGCCGCCACTACCAGGAGAAGCACATGACAGGACACCTTAC
GTGCGAGTACTGCCAGAAGCAGTTTCAACTGAAGTCAGCGCTGGTGGCCC
ACAGATGTCGGCTGAGGCATCCAGCCATCAGGGATAGTCAGTCCGCCATC
ACTTTGGGGAGGCATGTGTGCAAAAAAGGCTACACGCATCTGGGCGCCCT
ACAACGGCGCCTCACCTGCTGCCAGCATGGAACACCAAATACTCCGACGG
AGGACCAGAAGGATATAAGGGACACGGTGTGTCTGCAATGCAACAAGGAA
TATGTTGACACCCATCGCTGTTGTGTACGAACCGAGCGAAACTTTCAGTC
TGACCGTCTCATCTTCAGAAAGTCTTATCAGGAGACCCACGGTAAATCCA
GGTACCTGCCGGCGGAAAACTGGCGCTTTCTGTTTTGAAATGAAGCAACT
TTGTCCGCG
BS12789.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14451-PA | 795 | CG14451-RA | 1..669 | 17..685 | 3220 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14451-RA | 862 | CG14451-RA | 51..741 | 17..709 | 3310 | 98.7 | Plus |
| mael-RD | 2143 | CG11254-RD | 149..273 | 709..583 | 480 | 92.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22721373..22722041 | 685..17 | 3270 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:40:20 has no hits.
BS12789.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:34 Download gff for
BS12789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-PA | 1..691 | 17..709 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:27 Download gff for
BS12789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-RA | 48..741 | 14..709 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:47 Download gff for
BS12789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-RA | 48..741 | 14..709 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:47 Download gff for
BS12789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22721351..22722044 | 14..709 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:27 Download gff for
BS12789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22714451..22715144 | 14..709 | 98 | | Minus |
BS12789.complete Sequence
827 bp assembled on 2008-08-15
GenBank Submission: FJ637294
> BS12789.complete
GAAGTTATCATTCGACATGGAGAACAGGAGGTGCACCGTCGTTGCCGTGG
GTGACCTTGTGGATGAGCTTGGCTTCTGTTGCGAGTGGTGTGGCAAGGTG
TACAAGAGTCTTGTCCGCTACCACAACCACATTGTATGCACCCACAAGTT
ACCTGTTCCGGATCACCAGTTGGTCAACTGCTTCCACTGTCCACGCAGCG
ATTGCAGATTCCACAAGCATGGACCCGGAGTACAGAATTTTCGGCAAATT
GGAAGGCTCCGCCGCCACTACCAGGAGAAGCACATGACAGGACACCTTAC
GTGCGAGTACTGCCAGAAGCAGTTTCAACTGAAGTCAGCGCTGGTGGCCC
ACAGATGTCGGCTGAGGCATCCAGCCATCAGGGATAGTCAGTCCGCCATC
ACTTTGGGGAGGCATGTGTGCAAAAAAGGCTACACGCATCTGGGCGCCCT
ACAACGGCGCCTCACCTGCTGCCAGCATGGAACACCAAATACTCCGACGG
AGGACCAGAAGGATATAAGGGACACGGTGTGTCTGCAATGCAACAAGGAA
TATGTTGACACCCATCGCTGTTGTGTACGAACCGAGCGAAGCTTTCAGTC
TGACCGTCTCATCTTCAGAAAGTCTAGTCAGGAGACCCACGGTAAATCCA
GGTACCTGCAGGCGGAAGACTGGCGCTTTCTGTTTGAAATGGAGCAGCTT
GTCCGCGGCATTGACGACGGGCTTGTGCGGGACCCTTTGTTGCTCACGGA
ACTCGCCTCTCTGGTGCCGGTGCTTCAGCAAATCCAGGATTCTGATTTAG
AAATAAAGTGAAAGCTTTCTAGACCAT
BS12789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14451-RA | 795 | CG14451-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14451-RA | 862 | CG14451-RA | 51..845 | 17..811 | 3975 | 100 | Plus |
| mael-RD | 2143 | CG11254-RD | 45..273 | 811..583 | 1145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22721247..22722041 | 811..17 | 3975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:15 has no hits.
BS12789.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:33 Download gff for
BS12789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:12 Download gff for
BS12789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-RA | 51..844 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:00 Download gff for
BS12789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-RA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:33 Download gff for
BS12789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14451-RA | 51..844 | 17..810 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:33 Download gff for
BS12789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22721248..22722041 | 17..810 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:12 Download gff for
BS12789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22714348..22715141 | 17..810 | 100 | | Minus |
BS12789.pep Sequence
Translation from 16 to 810
> BS12789.pep
MENRRCTVVAVGDLVDELGFCCEWCGKVYKSLVRYHNHIVCTHKLPVPDH
QLVNCFHCPRSDCRFHKHGPGVQNFRQIGRLRRHYQEKHMTGHLTCEYCQ
KQFQLKSALVAHRCRLRHPAIRDSQSAITLGRHVCKKGYTHLGALQRRLT
CCQHGTPNTPTEDQKDIRDTVCLQCNKEYVDTHRCCVRTERSFQSDRLIF
RKSSQETHGKSRYLQAEDWRFLFEMEQLVRGIDDGLVRDPLLLTELASLV
PVLQQIQDSDLEIK*
BS12789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14451-PA | 264 | CG14451-PA | 1..264 | 1..264 | 1457 | 100 | Plus |
