Clone Sequence Records
BS12790.3prime Sequence
738 bp (677 high quality bases) assembled on 2006-10-13
> BS12790.3prime
ATGGTCTAGAAAGCTTCTAGTGCGTCTCATTGTCGCTGTCTTCGTCCTTG
TTGGCCGCATCGCCGGCTTTCCTCGCCTTCTCCGTCAGTTCTGAGGGATT
TATGAGATGTAGGCCACCGGTTACCCTGCCCACCAAACCCATTTCGAAGC
GGAAGTCCTTGTCCTTCAACTCGTCATGGACTTTGTAGATGATTTCACCA
GCGCTCTCCACCAATTCGTCGGTCCTCATATCCATCTTGAGCTTCTCCAT
CTCAGTCTTGGCCAGCTGCTTGGCCTTGCCGCTGGCGCAGGCGAAGTAAC
CGAAGGAGGCGAGAATGATGGAAAGTCCGAAGGGGCGGACGGCACTGTAC
AGAGTGTAGGCGTGAACGTAGCCGGCGACTCGGTGGCACAGGTGTTTAAG
CGGGATAGCCTGCTCAAATTGCTGTCTGTAGTTGGCTGCCTCCTGACGCG
CAATGTCAGCCACAAAGTTTCCATCGGCCACCAAGCCGGCCACCGCCATT
CCGATGTTCTTTTCGATGGTGAAGATGCGTCCGCCGGCGTCTGGTTCGTA
CAGTTTACTGGTGATGATCTTCTCCACGGCCAGCACCACGGCGTCCTTGC
CCCGAATCCCGATTACGGTGCCGCTCTTCTCCACCGCCTTTGAGGCGTAG
TCGATCTGGAAAACGCGGCCATCAGGCGAAAACTGCGAGGCCGACAAGTC
GTATCCAGTGCCAATAGTACTCATGTCGACTGATAACT
BS12790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PB | 708 | Prosalpha7-RB | 1..708 | 724..17 | 3540 | 100 | Minus |
CG1519-PA | 762 | Prosalpha7-RA | 1..421 | 724..304 | 2105 | 100 | Minus |
CG1519-PA | 762 | Prosalpha7-RA | 470..762 | 309..17 | 1465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 724..304 | 2105 | 100 | Minus |
Prosalpha7-RA | 976 | CG1519-RA | 589..881 | 309..17 | 1465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847239..9847638 | 304..703 | 2000 | 100 | Plus |
2R | 25286936 | 2R | 9846731..9846905 | 17..191 | 875 | 100 | Plus |
2R | 25286936 | 2R | 9847073..9847190 | 192..309 | 590 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 269..220 | 136 | 80 | Minus |
BS12790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:35 Download gff for
BS12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PB | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:17 Download gff for
BS12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..538 | 306..733 | 99 | <- | Minus |
Prosalpha7-RA | 593..887 | 10..305 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:57 Download gff for
BS12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..538 | 306..733 | 99 | <- | Minus |
Prosalpha7-RA | 593..887 | 10..305 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:57 Download gff for
BS12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846724..9846905 | 10..191 | 97 | <- | Plus |
2R | 9847073..9847192 | 192..310 | 98 | <- | Plus |
2R | 9847246..9847638 | 311..703 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:17 Download gff for
BS12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734229..5734410 | 10..191 | 97 | <- | Plus |
arm_2R | 5734578..5734697 | 192..310 | 98 | <- | Plus |
arm_2R | 5734751..5735143 | 311..703 | 100 | <- | Plus |
BS12790.5prime Sequence
741 bp (695 high quality bases) assembled on 2006-10-13
> BS12790.5prime
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGC
CTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGC
TCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATC
ATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAAT
GGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAG
AACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAA
GACAGCGACAATGAGACGCACTAGAAGCTTTCTAGACCATT
BS12790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PB | 708 | Prosalpha7-RB | 1..708 | 17..724 | 3540 | 100 | Plus |
CG1519-PA | 762 | Prosalpha7-RA | 1..421 | 17..437 | 2105 | 100 | Plus |
CG1519-PA | 762 | Prosalpha7-RA | 470..762 | 432..724 | 1465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 17..437 | 2105 | 100 | Plus |
Prosalpha7-RA | 976 | CG1519-RA | 589..881 | 432..724 | 1465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847239..9847638 | 437..38 | 2000 | 100 | Minus |
2R | 25286936 | 2R | 9846731..9846905 | 724..550 | 875 | 100 | Minus |
2R | 25286936 | 2R | 9847073..9847190 | 549..432 | 590 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 472..521 | 136 | 80 | Plus |
BS12790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:35 Download gff for
BS12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PB | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:19 Download gff for
BS12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..538 | 8..435 | 99 | <- | Plus |
Prosalpha7-RA | 593..887 | 436..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:17 Download gff for
BS12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..538 | 8..435 | 99 | <- | Plus |
Prosalpha7-RA | 593..887 | 436..731 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:17 Download gff for
BS12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9847246..9847638 | 38..430 | 100 | <- | Minus |
2R | 9846724..9846905 | 550..731 | 97 | <- | Minus |
2R | 9847073..9847192 | 431..549 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:19 Download gff for
BS12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734229..5734410 | 550..731 | 97 | <- | Minus |
arm_2R | 5734578..5734697 | 431..549 | 98 | <- | Minus |
arm_2R | 5734751..5735143 | 38..430 | 100 | <- | Minus |
BS12790.complete Sequence
740 bp assembled on 2006-11-01
GenBank Submission: FJ637295
> BS12790.complete
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGC
CTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGC
TCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATC
ATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAAT
GGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAG
AACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAA
GACAGCGACAATGAGACGCACTAGAAGCTTTCTAGACCAT
BS12790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 762 | CG1519-PA | 1..421 | 17..437 | 2105 | 100 | Plus |
Prosalpha7-RA | 762 | CG1519-PA | 470..762 | 432..724 | 1465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 17..437 | 2105 | 100 | Plus |
Prosalpha7-RA | 976 | CG1519-RA | 589..881 | 432..724 | 1465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847239..9847638 | 437..38 | 2000 | 100 | Minus |
2R | 25286936 | 2R | 9846731..9846905 | 724..550 | 875 | 100 | Minus |
2R | 25286936 | 2R | 9847073..9847190 | 549..432 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 472..521 | 136 | 80 | Plus |
BS12790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:16 Download gff for
BS12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RB | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:32 Download gff for
BS12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RB | 110..831 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:02 Download gff for
BS12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 593..881 | 436..724 | 100 | | Plus |
Prosalpha7-RA | 120..538 | 17..435 | 100 | <- | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:16 Download gff for
BS12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RB | 110..831 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:12 Download gff for
BS12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 593..881 | 436..724 | 100 | | Plus |
Prosalpha7-RA | 120..538 | 17..435 | 100 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:12 Download gff for
BS12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9847246..9847638 | 38..430 | 100 | <- | Minus |
2R | 9847697..9847717 | 17..37 | 100 | | Minus |
2R | 9846731..9846905 | 550..724 | 100 | <- | Minus |
2R | 9847073..9847192 | 431..549 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:02 Download gff for
BS12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734236..5734410 | 550..724 | 100 | <- | Minus |
arm_2R | 5734578..5734697 | 431..549 | 98 | <- | Minus |
arm_2R | 5734751..5735143 | 38..430 | 100 | <- | Minus |
arm_2R | 5735202..5735222 | 17..37 | 100 | | Minus |
BS12790.pep Sequence
Translation from 16 to 723
> BS12790.pep
MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAV
EKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYR
QQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASFGYFACASGK
AKQLAKTEMEKLKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGR
VTGGLHLINPSELTEKARKAGDAANKDEDSDNETH*
BS12790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-PA | 253 | CG1519-PA | 1..253 | 1..235 | 1163 | 92.9 | Plus |
Prosalpha1-PB | 244 | CG18495-PB | 8..242 | 7..222 | 255 | 28.4 | Plus |
Prosalpha1-PA | 244 | CG18495-PA | 8..242 | 7..222 | 255 | 28.4 | Plus |
CG30382-PB | 244 | CG30382-PB | 8..242 | 7..222 | 255 | 28.4 | Plus |
CG30382-PA | 244 | CG30382-PA | 8..242 | 7..222 | 255 | 28.4 | Plus |