Clone BS12790 Report

Search the DGRC for BS12790

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptProsalpha7-RB
Protein status:BS12790.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS12790.3prime Sequence

738 bp (677 high quality bases) assembled on 2006-10-13

> BS12790.3prime
ATGGTCTAGAAAGCTTCTAGTGCGTCTCATTGTCGCTGTCTTCGTCCTTG
TTGGCCGCATCGCCGGCTTTCCTCGCCTTCTCCGTCAGTTCTGAGGGATT
TATGAGATGTAGGCCACCGGTTACCCTGCCCACCAAACCCATTTCGAAGC
GGAAGTCCTTGTCCTTCAACTCGTCATGGACTTTGTAGATGATTTCACCA
GCGCTCTCCACCAATTCGTCGGTCCTCATATCCATCTTGAGCTTCTCCAT
CTCAGTCTTGGCCAGCTGCTTGGCCTTGCCGCTGGCGCAGGCGAAGTAAC
CGAAGGAGGCGAGAATGATGGAAAGTCCGAAGGGGCGGACGGCACTGTAC
AGAGTGTAGGCGTGAACGTAGCCGGCGACTCGGTGGCACAGGTGTTTAAG
CGGGATAGCCTGCTCAAATTGCTGTCTGTAGTTGGCTGCCTCCTGACGCG
CAATGTCAGCCACAAAGTTTCCATCGGCCACCAAGCCGGCCACCGCCATT
CCGATGTTCTTTTCGATGGTGAAGATGCGTCCGCCGGCGTCTGGTTCGTA
CAGTTTACTGGTGATGATCTTCTCCACGGCCAGCACCACGGCGTCCTTGC
CCCGAATCCCGATTACGGTGCCGCTCTTCTCCACCGCCTTTGAGGCGTAG
TCGATCTGGAAAACGCGGCCATCAGGCGAAAACTGCGAGGCCGACAAGTC
GTATCCAGTGCCAATAGTACTCATGTCGACTGATAACT

BS12790.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1519-PB 708 Prosalpha7-RB 1..708 724..17 3540 100 Minus
CG1519-PA 762 Prosalpha7-RA 1..421 724..304 2105 100 Minus
CG1519-PA 762 Prosalpha7-RA 470..762 309..17 1465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..540 724..304 2105 100 Minus
Prosalpha7-RA 976 CG1519-RA 589..881 309..17 1465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847239..9847638 304..703 2000 100 Plus
2R 25286936 2R 9846731..9846905 17..191 875 100 Plus
2R 25286936 2R 9847073..9847190 192..309 590 100 Plus
Blast to na_te.dros performed 2015-02-12 11:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 269..220 136 80 Minus

BS12790.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:35 Download gff for BS12790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PB 1..708 17..724 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:17 Download gff for BS12790.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..538 306..733 99 <- Minus
Prosalpha7-RA 593..887 10..305 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:57 Download gff for BS12790.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..538 306..733 99 <- Minus
Prosalpha7-RA 593..887 10..305 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:57 Download gff for BS12790.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9846724..9846905 10..191 97 <- Plus
2R 9847073..9847192 192..310 98 <- Plus
2R 9847246..9847638 311..703 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:17 Download gff for BS12790.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734229..5734410 10..191 97 <- Plus
arm_2R 5734578..5734697 192..310 98 <- Plus
arm_2R 5734751..5735143 311..703 100 <- Plus

BS12790.5prime Sequence

741 bp (695 high quality bases) assembled on 2006-10-13

> BS12790.5prime
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGC
CTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGC
TCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATC
ATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAAT
GGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAG
AACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAA
GACAGCGACAATGAGACGCACTAGAAGCTTTCTAGACCATT

BS12790.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1519-PB 708 Prosalpha7-RB 1..708 17..724 3540 100 Plus
CG1519-PA 762 Prosalpha7-RA 1..421 17..437 2105 100 Plus
CG1519-PA 762 Prosalpha7-RA 470..762 432..724 1465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..540 17..437 2105 100 Plus
Prosalpha7-RA 976 CG1519-RA 589..881 432..724 1465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847239..9847638 437..38 2000 100 Minus
2R 25286936 2R 9846731..9846905 724..550 875 100 Minus
2R 25286936 2R 9847073..9847190 549..432 590 100 Minus
Blast to na_te.dros performed 2015-02-12 11:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 472..521 136 80 Plus

BS12790.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:35 Download gff for BS12790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PB 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:19 Download gff for BS12790.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..538 8..435 99 <- Plus
Prosalpha7-RA 593..887 436..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:17 Download gff for BS12790.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..538 8..435 99 <- Plus
Prosalpha7-RA 593..887 436..731 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:17 Download gff for BS12790.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9847246..9847638 38..430 100 <- Minus
2R 9846724..9846905 550..731 97 <- Minus
2R 9847073..9847192 431..549 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:19 Download gff for BS12790.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734229..5734410 550..731 97 <- Minus
arm_2R 5734578..5734697 431..549 98 <- Minus
arm_2R 5734751..5735143 38..430 100 <- Minus

BS12790.complete Sequence

740 bp assembled on 2006-11-01

GenBank Submission: FJ637295

> BS12790.complete
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGC
CTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGC
TCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATC
ATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAAT
GGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAG
AACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAA
GACAGCGACAATGAGACGCACTAGAAGCTTTCTAGACCAT

BS12790.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 762 CG1519-PA 1..421 17..437 2105 100 Plus
Prosalpha7-RA 762 CG1519-PA 470..762 432..724 1465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..540 17..437 2105 100 Plus
Prosalpha7-RA 976 CG1519-RA 589..881 432..724 1465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847239..9847638 437..38 2000 100 Minus
2R 25286936 2R 9846731..9846905 724..550 875 100 Minus
2R 25286936 2R 9847073..9847190 549..432 590 100 Minus
Blast to na_te.dros performed 2014-11-27 06:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 472..521 136 80 Plus

BS12790.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:16 Download gff for BS12790.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RB 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:32 Download gff for BS12790.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RB 110..831 8..731 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:02 Download gff for BS12790.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 593..881 436..724 100   Plus
Prosalpha7-RA 120..538 17..435 100 <- Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:16 Download gff for BS12790.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RB 110..831 8..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:12 Download gff for BS12790.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 593..881 436..724 100   Plus
Prosalpha7-RA 120..538 17..435 100 <- Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:12 Download gff for BS12790.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9847246..9847638 38..430 100 <- Minus
2R 9847697..9847717 17..37 100   Minus
2R 9846731..9846905 550..724 100 <- Minus
2R 9847073..9847192 431..549 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:02 Download gff for BS12790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734236..5734410 550..724 100 <- Minus
arm_2R 5734578..5734697 431..549 98 <- Minus
arm_2R 5734751..5735143 38..430 100 <- Minus
arm_2R 5735202..5735222 17..37 100   Minus

BS12790.pep Sequence

Translation from 16 to 723

> BS12790.pep
MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAV
EKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYR
QQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASFGYFACASGK
AKQLAKTEMEKLKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGR
VTGGLHLINPSELTEKARKAGDAANKDEDSDNETH*

BS12790.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-PA 253 CG1519-PA 1..253 1..235 1163 92.9 Plus
Prosalpha1-PB 244 CG18495-PB 8..242 7..222 255 28.4 Plus
Prosalpha1-PA 244 CG18495-PA 8..242 7..222 255 28.4 Plus
CG30382-PB 244 CG30382-PB 8..242 7..222 255 28.4 Plus
CG30382-PA 244 CG30382-PA 8..242 7..222 255 28.4 Plus