Clone Sequence Records
BS12792.3prime Sequence
761 bp (663 high quality bases) assembled on 2006-10-13
> BS12792.3prime
ATGGTCTAGAAAGCTTCTATACCTTCTTGCGGACAAAGTGATCGTAGAAC
ACAACATACCCGAACTTGGGAGAGTAGACCATCGATCGCTTGGCGTTCCT
CGAGTAAATGTTGAACTGGCCGCCCACCGAAATCATTTTGTGGTCACCGC
GATGCATGAACATCAGTCCGAAGTGATGGTCGTGCATCACCTGGTAGTTA
TCGCTATCCGTGTACTTGACCACGTTATACCGGGGATTCGAGTAGCTGAG
ATGGTGTGGCATGGGCTTCAGGCGAGAGCGACCTTGGAAGACTCCCCGCC
AGTCCGTGTGCTTGATTGCCTCGCGGAAGCAGTTGCGCCAGCTCATGTCC
AGGTCTATGTAGCCGGAGATCTCCGAGCCGTCCATGTGGATGTACGAGGT
AAAAACGATGGTCGATAGTATCTTGTTCAAGTTGAGCAGCTCGCGGGCCT
TGAACTCCAGAAGAACTGGGTCCCTGTTCGTCGGCGACAGGAGGTCGCTG
AACAGGCCCACGTGTGCCAGCTTCGGCCTAATGGCCTCCAGGGCCAGGTC
AACCCTCTTCTCATACTCTTCGGCTGTGTAGGGTATCTTGGTGGTGCGGT
AACCCAGCTGGACGATGGTCTTGATCGTGTTTTGATTGCCCAGATATCTG
TGGTCCGTGACGGTGGCAAACGAGGAGATGTAGTCATTTGTATTGTCAAA
CTCCAATACGCTAAAGTCCACGCTCTTTCCCTGGGTGGCCATGTCGACTG
ATAACTTCGTT
BS12792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-PA | 726 | CG14013-RA | 55..726 | 688..17 | 3285 | 99.5 | Minus |
CG14013-PA | 726 | CG14013-RA | 1..51 | 742..692 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-RA | 955 | CG14013-RA | 136..863 | 742..15 | 3550 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5552935..5553333 | 15..413 | 1965 | 99.5 | Plus |
2L | 23513712 | 2L | 5553386..5553715 | 413..742 | 1590 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:35:48 has no hits.
BS12792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:36 Download gff for
BS12792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-PA | 1..726 | 17..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:59 Download gff for
BS12792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..863 | 15..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:26 Download gff for
BS12792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..863 | 15..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:26 Download gff for
BS12792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5552935..5553332 | 15..412 | 99 | <- | Plus |
2L | 5553386..5553715 | 413..742 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:59 Download gff for
BS12792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5552935..5553332 | 15..412 | 99 | <- | Plus |
arm_2L | 5553386..5553715 | 413..742 | 99 | | Plus |
BS12792.5prime Sequence
754 bp (711 high quality bases) assembled on 2006-10-13
> BS12792.5prime
GAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGACTTTAGCG
TATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTGCCACCGTC
ACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACCATCGTCCA
GCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGAGTATGAGA
AGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGGCACACGTG
GGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCAGTTCTTCT
GGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACTATCGACCA
TCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCTCCGGCTAC
ATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCAATCAAGCA
CACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTCGCCTGAAGCCCATGC
CACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACG
GATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGGACTGATGTT
CATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCCAGTTCAACA
TTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCCAAGTTCGGG
TATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAAGTATAGAAGCTTTC
TAGA
BS12792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-PA | 726 | CG14013-RA | 1..726 | 17..742 | 3530 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-RA | 955 | CG14013-RA | 136..863 | 17..744 | 3580 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5552935..5553333 | 744..346 | 1950 | 99.2 | Minus |
2L | 23513712 | 2L | 5553386..5553715 | 346..17 | 1635 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:02:55 has no hits.
BS12792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:37 Download gff for
BS12792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-PA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:31 Download gff for
BS12792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..863 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:43 Download gff for
BS12792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..863 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:43 Download gff for
BS12792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5552935..5553332 | 347..744 | 99 | <- | Minus |
2L | 5553386..5553715 | 17..346 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:31 Download gff for
BS12792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5552935..5553332 | 347..744 | 99 | <- | Minus |
arm_2L | 5553386..5553715 | 17..346 | 99 | | Minus |
BS12792.complete Sequence
758 bp assembled on 2006-11-01
GenBank Submission: FJ637296
> BS12792.complete
GAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGACTTTAGCG
TATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTGCCACCGTC
ACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACCATCGTCCA
GCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGAGTATGAGA
AGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGGCACACGTG
GGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCAGTTCTTCT
GGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACTATCGACCA
TCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCTCCGGCTAC
ATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCAATCAAGCA
CACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTCGCCTGAAGCCCATGC
CACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACG
GATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGGACTGATGTT
CATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCCAGTTCAACA
TTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCCAAGTTCGGG
TATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAGGTATAGAAGCTTTC
TAGACCAT
BS12792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-RA | 726 | CG14013-PA | 1..726 | 17..742 | 3585 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-RA | 955 | CG14013-RA | 136..863 | 17..744 | 3595 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5552935..5553333 | 744..346 | 1965 | 99.5 | Minus |
2L | 23513712 | 2L | 5553386..5553715 | 346..17 | 1635 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:38:25 has no hits.
BS12792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:17 Download gff for
BS12792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:33 Download gff for
BS12792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 134..861 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:19 Download gff for
BS12792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..861 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:17 Download gff for
BS12792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 134..861 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:27 Download gff for
BS12792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..861 | 17..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:27 Download gff for
BS12792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5552937..5553332 | 347..742 | 99 | <- | Minus |
2L | 5553386..5553715 | 17..346 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:19 Download gff for
BS12792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5552937..5553332 | 347..742 | 99 | <- | Minus |
arm_2L | 5553386..5553715 | 17..346 | 99 | | Minus |
BS12792.pep Sequence
Translation from 16 to 741
> BS12792.pep
MATQGKSVDFSVLEFDNYNDYISSFATVTDHRYLGNQNTIKTIVQLGYRT
TKIPYTAEEYEKRVDLALEAIRPKLAHVGLFSDLLSPTNRDPVLLEFKAR
ELLNLNKILSTIVFTSYIHMDGSEISGYIDLDMSWRNCFREAIKHTDWRG
VFQGRSRLKPMPHHLSYSNPRYNVVKYTDSDNYQVMHDHHFGLMFMHRGD
HKMISVGGQFNIYSRNAKRSMVYSPKFGYVVFYDHFVRKKV*
BS12792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-PA | 241 | CG14013-PA | 1..241 | 1..241 | 1283 | 100 | Plus |
CG8138-PA | 233 | CG8138-PA | 3..232 | 9..240 | 392 | 36.6 | Plus |
CG3528-PA | 235 | CG3528-PA | 2..233 | 11..239 | 384 | 35.5 | Plus |
CG14017-PA | 238 | CG14017-PA | 26..238 | 18..241 | 317 | 37.1 | Plus |