Clone BS12792 Report

Search the DGRC for BS12792

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG14013-RA
Protein status:BS12792.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12792.3prime Sequence

761 bp (663 high quality bases) assembled on 2006-10-13

> BS12792.3prime
ATGGTCTAGAAAGCTTCTATACCTTCTTGCGGACAAAGTGATCGTAGAAC
ACAACATACCCGAACTTGGGAGAGTAGACCATCGATCGCTTGGCGTTCCT
CGAGTAAATGTTGAACTGGCCGCCCACCGAAATCATTTTGTGGTCACCGC
GATGCATGAACATCAGTCCGAAGTGATGGTCGTGCATCACCTGGTAGTTA
TCGCTATCCGTGTACTTGACCACGTTATACCGGGGATTCGAGTAGCTGAG
ATGGTGTGGCATGGGCTTCAGGCGAGAGCGACCTTGGAAGACTCCCCGCC
AGTCCGTGTGCTTGATTGCCTCGCGGAAGCAGTTGCGCCAGCTCATGTCC
AGGTCTATGTAGCCGGAGATCTCCGAGCCGTCCATGTGGATGTACGAGGT
AAAAACGATGGTCGATAGTATCTTGTTCAAGTTGAGCAGCTCGCGGGCCT
TGAACTCCAGAAGAACTGGGTCCCTGTTCGTCGGCGACAGGAGGTCGCTG
AACAGGCCCACGTGTGCCAGCTTCGGCCTAATGGCCTCCAGGGCCAGGTC
AACCCTCTTCTCATACTCTTCGGCTGTGTAGGGTATCTTGGTGGTGCGGT
AACCCAGCTGGACGATGGTCTTGATCGTGTTTTGATTGCCCAGATATCTG
TGGTCCGTGACGGTGGCAAACGAGGAGATGTAGTCATTTGTATTGTCAAA
CTCCAATACGCTAAAGTCCACGCTCTTTCCCTGGGTGGCCATGTCGACTG
ATAACTTCGTT

BS12792.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-PA 726 CG14013-RA 55..726 688..17 3285 99.5 Minus
CG14013-PA 726 CG14013-RA 1..51 742..692 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-RA 955 CG14013-RA 136..863 742..15 3550 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5552935..5553333 15..413 1965 99.5 Plus
2L 23513712 2L 5553386..5553715 413..742 1590 98.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:35:48 has no hits.

BS12792.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:36 Download gff for BS12792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-PA 1..726 17..742 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:59 Download gff for BS12792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..863 15..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:26 Download gff for BS12792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..863 15..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:26 Download gff for BS12792.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5552935..5553332 15..412 99 <- Plus
2L 5553386..5553715 413..742 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:59 Download gff for BS12792.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5552935..5553332 15..412 99 <- Plus
arm_2L 5553386..5553715 413..742 99   Plus

BS12792.5prime Sequence

754 bp (711 high quality bases) assembled on 2006-10-13

> BS12792.5prime
GAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGACTTTAGCG
TATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTGCCACCGTC
ACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACCATCGTCCA
GCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGAGTATGAGA
AGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGGCACACGTG
GGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCAGTTCTTCT
GGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACTATCGACCA
TCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCTCCGGCTAC
ATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCAATCAAGCA
CACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTCGCCTGAAGCCCATGC
CACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACG
GATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGGACTGATGTT
CATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCCAGTTCAACA
TTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCCAAGTTCGGG
TATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAAGTATAGAAGCTTTC
TAGA

BS12792.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-PA 726 CG14013-RA 1..726 17..742 3530 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-RA 955 CG14013-RA 136..863 17..744 3580 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5552935..5553333 744..346 1950 99.2 Minus
2L 23513712 2L 5553386..5553715 346..17 1635 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 17:02:55 has no hits.

BS12792.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:37 Download gff for BS12792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-PA 1..726 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:31 Download gff for BS12792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..863 17..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:43 Download gff for BS12792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..863 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:43 Download gff for BS12792.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5552935..5553332 347..744 99 <- Minus
2L 5553386..5553715 17..346 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:31 Download gff for BS12792.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5552935..5553332 347..744 99 <- Minus
arm_2L 5553386..5553715 17..346 99   Minus

BS12792.complete Sequence

758 bp assembled on 2006-11-01

GenBank Submission: FJ637296

> BS12792.complete
GAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGACTTTAGCG
TATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTGCCACCGTC
ACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACCATCGTCCA
GCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGAGTATGAGA
AGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGGCACACGTG
GGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCAGTTCTTCT
GGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACTATCGACCA
TCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCTCCGGCTAC
ATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCAATCAAGCA
CACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTCGCCTGAAGCCCATGC
CACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACG
GATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGGACTGATGTT
CATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCCAGTTCAACA
TTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCCAAGTTCGGG
TATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAGGTATAGAAGCTTTC
TAGACCAT

BS12792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-RA 726 CG14013-PA 1..726 17..742 3585 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-RA 955 CG14013-RA 136..863 17..744 3595 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5552935..5553333 744..346 1965 99.5 Minus
2L 23513712 2L 5553386..5553715 346..17 1635 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 06:38:25 has no hits.

BS12792.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:17 Download gff for BS12792.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 1..726 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:33 Download gff for BS12792.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 134..861 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:19 Download gff for BS12792.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..861 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:17 Download gff for BS12792.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 134..861 17..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:27 Download gff for BS12792.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..861 17..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:27 Download gff for BS12792.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5552937..5553332 347..742 99 <- Minus
2L 5553386..5553715 17..346 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:19 Download gff for BS12792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5552937..5553332 347..742 99 <- Minus
arm_2L 5553386..5553715 17..346 99   Minus

BS12792.pep Sequence

Translation from 16 to 741

> BS12792.pep
MATQGKSVDFSVLEFDNYNDYISSFATVTDHRYLGNQNTIKTIVQLGYRT
TKIPYTAEEYEKRVDLALEAIRPKLAHVGLFSDLLSPTNRDPVLLEFKAR
ELLNLNKILSTIVFTSYIHMDGSEISGYIDLDMSWRNCFREAIKHTDWRG
VFQGRSRLKPMPHHLSYSNPRYNVVKYTDSDNYQVMHDHHFGLMFMHRGD
HKMISVGGQFNIYSRNAKRSMVYSPKFGYVVFYDHFVRKKV*

BS12792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-PA 241 CG14013-PA 1..241 1..241 1283 100 Plus
CG8138-PA 233 CG8138-PA 3..232 9..240 392 36.6 Plus
CG3528-PA 235 CG3528-PA 2..233 11..239 384 35.5 Plus
CG14017-PA 238 CG14017-PA 26..238 18..241 317 37.1 Plus