Clone BS12795 Report

Search the DGRC for BS12795

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:127
Well:95
Vector:pDNR-Dual
Associated Gene/Transcriptswif-RA
Protein status:BS12795.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12795.3prime Sequence

834 bp (687 high quality bases) assembled on 2006-10-13

> BS12795.3prime
ATGGTCTAGAAAGCTTTCACAGATTTAATCCATCGCGTCTCATTCTTTCC
GCAAGAGCTATACATTTCGGGGTGGTCTCCAAGCAAAGGCACTCTCTTTT
TCGGAGCGGTCTTGTTCCTCTTATTTTTTCTGAGTAACAAGGATATGGAG
CTCGCAACTTGGTGCATAGGGTAGGCTTTCTGCCTCTGGAGCAACGAGGA
TTGCAGCGAGCCAGCTTGCAACAGGGGTGAAAGAATTTCGGACACTTCCT
CGTTGGGTCCCGCTCCCATTCTCCATCCGCACAGAGTAGCCTTCGAGCCT
TATAGTTGATTTGGCAAGTTCCTGGGCAGGGCGGCCTGATCCGGTACAGA
ATCTCAGGAGGTTCGATGGCGTCCAGGCAGCAAACCTTCTTCAGCCGTTT
CTTAACGGGTGAACACTCCACCCAGGTGCGTTGGTAGCAGCGGCACTTGT
TTGAGGGATGGTAGTACATCGCATCGAAGCGGGGCAGCATTTCCTTGCAG
AACGGCTGCTCGTTCGCCTTGCAAGGTGGCTCCCACATCGAACGGAATGG
CTTCTCCTCCAGCTTTGCGGCTTTGGGTCGTCTTATCTCTACGCAGGGAT
TTTTGGCCGCCGATCGCAGGACACAGCATTTCCTCTCCTTCTTCTGATCG
CGTTCTTGCTTCAATAACCTCTCATGTGGCAGTTTGAGATTGATCGTTTC
CCTGGCCTGCACGCATCTGCCGCTTGGAACATGATGGCACAAAGGGTCGA
CAGGTTGGCATGGCGGATCCGCGTGGTAGGTCACTTTGCTGGCGAAGCTT
CTGAAACCTTGCGCTTTAGGGGCAAAGCTCCTGA

BS12795.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30366-PA 855 CG30366-RA 38..855 834..17 4065 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
swif-RB 2074 CG30366-RB 1038..1855 834..17 4075 99.9 Minus
swif-RA 1015 CG30366-RA 81..898 834..17 4075 99.9 Minus
cola-RA 2074 CG30363-RA 1038..1855 834..17 4075 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8363491..8364308 17..834 4075 99.9 Plus
Blast to na_te.dros performed on 2015-02-08 12:05:43 has no hits.

BS12795.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:38 Download gff for BS12795.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30366-PA 39..855 17..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:44 Download gff for BS12795.3prime
Subject Subject Range Query Range Percent Splice Strand
swif-RA 82..898 17..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:27 Download gff for BS12795.3prime
Subject Subject Range Query Range Percent Splice Strand
cola-RA 1039..1855 17..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:27 Download gff for BS12795.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8363491..8364307 17..833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:44 Download gff for BS12795.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4250996..4251812 17..833 99   Plus

BS12795.5prime Sequence

768 bp (747 high quality bases) assembled on 2006-10-13

> BS12795.5prime
GAAGTTATCAGTCGACATGCAGTCAGCACTGTGGATCTTTTGCAGACAAG
GTTTCAGGAGCTTTGCCACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGC
AAAGTGACCTACCACGCGGATCCGCCATGCCAACCTGTCGACCCTTTGTG
CCATCATGTTCCAAGCGGCAGATGCGTGCAGGCCAGGGAAACGATCAATC
TCAAACTGCCACATGAGAGGTTATTGAAGCAAGAACGCGATCAGAAGAAG
GAGAGGAAATGCTGTGTCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGA
GATAAGACGACCCAAAGCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGA
TGTGGGAGCCACCTTGCAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATG
CTGCCCCGCTTCGATGCGATGTACTACCATCCCTCAAACAAGTGCCGCTG
CTACCAACGCACCTGGGTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGA
AGGTTTGCTGCCTGGACGCCATCGAACCTCCTGAGATTCTGTACCGGATC
AGGCCGCCCTGCCCAGGAACTTGCCAAATCAACTATAAGGCTCGAAGGCT
ACTCTGTGCGGATGGAGAATGGGAGCGGGACCCAACGAGGAAGTGTCCGA
AATTCTTTCACCCCTGTTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCC
AGAGGCAGAAAGCCTACCCTATGCACCAAGTTGCGAGCTCCATATCCTTG
TTACTCAGAAAAAATAAG

BS12795.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30366-PA 855 CG30366-RA 1..752 17..768 3760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
swif-RB 2074 CG30366-RB 1000..1752 16..768 3765 100 Plus
swif-RA 1015 CG30366-RA 43..795 16..768 3765 100 Plus
cola-RA 2074 CG30363-RA 1000..1752 16..768 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8363594..8364346 768..16 3765 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:03:21 has no hits.

BS12795.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:38 Download gff for BS12795.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30366-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:37 Download gff for BS12795.5prime
Subject Subject Range Query Range Percent Splice Strand
swif-RA 43..795 16..768 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:47 Download gff for BS12795.5prime
Subject Subject Range Query Range Percent Splice Strand
cola-RA 1000..1752 16..768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:47 Download gff for BS12795.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8363594..8364346 16..768 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:37 Download gff for BS12795.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4251099..4251851 16..768 100   Minus

BS12795.complete Sequence

887 bp assembled on 2006-11-01

GenBank Submission: FJ637297

> BS12795.complete
GAAGTTATCAGTCGACATGCAGTCAGCACTGTGGATCTTTTGCAGACAAG
GTTTCAGGAGCTTTGCCACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGC
AAAGTGACCTACCACGCGGATCCGCCATGCCAACCTGTCGACCCTTTGTG
CCATCATGTTCCAAGCGGCAGATGCGTGCAGGCCAGGGAAACGATCAATC
TCAAACTGCCACATGAGAGGTTATTGAAGCAAGAACGCGATCAGAAGAAG
GAGAGGAAATGCTGTGTCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGA
GATAAGACGACCCAAAGCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGA
TGTGGGAGCCACCTTGCAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATG
CTGCCCCGCTTCGATGCGATGTACTACCATCCCTCAAACAAGTGCCGCTG
CTACCAACGCACCTGGGTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGA
AGGTTTGCTGCCTGGACGCCATCGAACCTCCTGAGATTCTGTACCGGATC
AGGCCGCCCTGCCCAGGAACTTGCCAAATCAACTATAAGGCTCGAAGGCT
ACTCTGTGCGGATGGAGAATGGGAGCGGGACCCAACGAGGAAGTGTCCGA
AATTCTTTCACCCCTGTTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCC
AGAGGCAGAAAGCCTACCCTATGCACCAAGTTGCGAGCTCCATATCCTTG
TTACTCAGAAAAAATAAGAGGAACAAGACCGCTCCGAAAAAGAGAGTGCC
TTTGCTTGGAGACCACCCCGAAATGTATAGCTCTTGCGGAAAGAATGAGA
CGCGATGGATTAAATCTGTGAAAGCTTTCTAGACCAT

BS12795.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
swif-RB 855 CG30366-PB 1..855 17..871 4275 100 Plus
swif-RA 855 CG30366-PA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
swif-RB 2074 CG30366-RB 1000..1855 16..871 4280 100 Plus
swif-RA 1015 CG30366-RA 43..898 16..871 4280 100 Plus
cola-RA 2074 CG30363-RA 1000..1855 16..871 4280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8363491..8364346 871..16 4280 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:35:10 has no hits.

BS12795.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:58 Download gff for BS12795.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:11 Download gff for BS12795.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1000..1855 16..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:40 Download gff for BS12795.complete
Subject Subject Range Query Range Percent Splice Strand
swif-RA 44..897 17..870 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:58 Download gff for BS12795.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1000..1855 16..871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:35 Download gff for BS12795.complete
Subject Subject Range Query Range Percent Splice Strand
cola-RA 1001..1854 17..870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:35 Download gff for BS12795.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8363492..8364345 17..870 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:40 Download gff for BS12795.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4250997..4251850 17..870 100   Minus

BS12795.pep Sequence

Translation from 16 to 870

> BS12795.pep
MQSALWIFCRQGFRSFATKAQGFRSFASKVTYHADPPCQPVDPLCHHVPS
GRCVQARETINLKLPHERLLKQERDQKKERKCCVLRSAAKNPCVEIRRPK
AAKLEEKPFRSMWEPPCKANEQPFCKEMLPRFDAMYYHPSNKCRCYQRTW
VECSPVKKRLKKVCCLDAIEPPEILYRIRPPCPGTCQINYKARRLLCADG
EWERDPTRKCPKFFHPCCKLARCNPRCSRGRKPTLCTKLRAPYPCYSEKI
RGTRPLRKRECLCLETTPKCIALAERMRRDGLNL*

BS12795.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
swif-PB 284 CG30366-PB 1..284 1..284 1606 100 Plus
swif-PA 284 CG30366-PA 1..284 1..284 1606 100 Plus
hubl-PB 291 CG30364-PB 54..272 37..279 293 31 Plus
hubl-PA 291 CG30364-PA 54..272 37..279 293 31 Plus
CG11635-PA 286 CG11635-PA 41..235 88..279 219 33.6 Plus