Clone Sequence Records
BS12795.3prime Sequence
834 bp (687 high quality bases) assembled on 2006-10-13
> BS12795.3prime
ATGGTCTAGAAAGCTTTCACAGATTTAATCCATCGCGTCTCATTCTTTCC
GCAAGAGCTATACATTTCGGGGTGGTCTCCAAGCAAAGGCACTCTCTTTT
TCGGAGCGGTCTTGTTCCTCTTATTTTTTCTGAGTAACAAGGATATGGAG
CTCGCAACTTGGTGCATAGGGTAGGCTTTCTGCCTCTGGAGCAACGAGGA
TTGCAGCGAGCCAGCTTGCAACAGGGGTGAAAGAATTTCGGACACTTCCT
CGTTGGGTCCCGCTCCCATTCTCCATCCGCACAGAGTAGCCTTCGAGCCT
TATAGTTGATTTGGCAAGTTCCTGGGCAGGGCGGCCTGATCCGGTACAGA
ATCTCAGGAGGTTCGATGGCGTCCAGGCAGCAAACCTTCTTCAGCCGTTT
CTTAACGGGTGAACACTCCACCCAGGTGCGTTGGTAGCAGCGGCACTTGT
TTGAGGGATGGTAGTACATCGCATCGAAGCGGGGCAGCATTTCCTTGCAG
AACGGCTGCTCGTTCGCCTTGCAAGGTGGCTCCCACATCGAACGGAATGG
CTTCTCCTCCAGCTTTGCGGCTTTGGGTCGTCTTATCTCTACGCAGGGAT
TTTTGGCCGCCGATCGCAGGACACAGCATTTCCTCTCCTTCTTCTGATCG
CGTTCTTGCTTCAATAACCTCTCATGTGGCAGTTTGAGATTGATCGTTTC
CCTGGCCTGCACGCATCTGCCGCTTGGAACATGATGGCACAAAGGGTCGA
CAGGTTGGCATGGCGGATCCGCGTGGTAGGTCACTTTGCTGGCGAAGCTT
CTGAAACCTTGCGCTTTAGGGGCAAAGCTCCTGA
BS12795.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30366-PA | 855 | CG30366-RA | 38..855 | 834..17 | 4065 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-RB | 2074 | CG30366-RB | 1038..1855 | 834..17 | 4075 | 99.9 | Minus |
swif-RA | 1015 | CG30366-RA | 81..898 | 834..17 | 4075 | 99.9 | Minus |
cola-RA | 2074 | CG30363-RA | 1038..1855 | 834..17 | 4075 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8363491..8364308 | 17..834 | 4075 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:05:43 has no hits.
BS12795.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:38 Download gff for
BS12795.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-PA | 39..855 | 17..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:44 Download gff for
BS12795.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swif-RA | 82..898 | 17..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:27 Download gff for
BS12795.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cola-RA | 1039..1855 | 17..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:27 Download gff for
BS12795.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8363491..8364307 | 17..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:44 Download gff for
BS12795.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4250996..4251812 | 17..833 | 99 | | Plus |
BS12795.5prime Sequence
768 bp (747 high quality bases) assembled on 2006-10-13
> BS12795.5prime
GAAGTTATCAGTCGACATGCAGTCAGCACTGTGGATCTTTTGCAGACAAG
GTTTCAGGAGCTTTGCCACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGC
AAAGTGACCTACCACGCGGATCCGCCATGCCAACCTGTCGACCCTTTGTG
CCATCATGTTCCAAGCGGCAGATGCGTGCAGGCCAGGGAAACGATCAATC
TCAAACTGCCACATGAGAGGTTATTGAAGCAAGAACGCGATCAGAAGAAG
GAGAGGAAATGCTGTGTCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGA
GATAAGACGACCCAAAGCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGA
TGTGGGAGCCACCTTGCAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATG
CTGCCCCGCTTCGATGCGATGTACTACCATCCCTCAAACAAGTGCCGCTG
CTACCAACGCACCTGGGTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGA
AGGTTTGCTGCCTGGACGCCATCGAACCTCCTGAGATTCTGTACCGGATC
AGGCCGCCCTGCCCAGGAACTTGCCAAATCAACTATAAGGCTCGAAGGCT
ACTCTGTGCGGATGGAGAATGGGAGCGGGACCCAACGAGGAAGTGTCCGA
AATTCTTTCACCCCTGTTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCC
AGAGGCAGAAAGCCTACCCTATGCACCAAGTTGCGAGCTCCATATCCTTG
TTACTCAGAAAAAATAAG
BS12795.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30366-PA | 855 | CG30366-RA | 1..752 | 17..768 | 3760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-RB | 2074 | CG30366-RB | 1000..1752 | 16..768 | 3765 | 100 | Plus |
swif-RA | 1015 | CG30366-RA | 43..795 | 16..768 | 3765 | 100 | Plus |
cola-RA | 2074 | CG30363-RA | 1000..1752 | 16..768 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8363594..8364346 | 768..16 | 3765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:03:21 has no hits.
BS12795.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:33:38 Download gff for
BS12795.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:37 Download gff for
BS12795.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swif-RA | 43..795 | 16..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:47 Download gff for
BS12795.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cola-RA | 1000..1752 | 16..768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:47 Download gff for
BS12795.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8363594..8364346 | 16..768 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:37 Download gff for
BS12795.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4251099..4251851 | 16..768 | 100 | | Minus |
BS12795.complete Sequence
887 bp assembled on 2006-11-01
GenBank Submission: FJ637297
> BS12795.complete
GAAGTTATCAGTCGACATGCAGTCAGCACTGTGGATCTTTTGCAGACAAG
GTTTCAGGAGCTTTGCCACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGC
AAAGTGACCTACCACGCGGATCCGCCATGCCAACCTGTCGACCCTTTGTG
CCATCATGTTCCAAGCGGCAGATGCGTGCAGGCCAGGGAAACGATCAATC
TCAAACTGCCACATGAGAGGTTATTGAAGCAAGAACGCGATCAGAAGAAG
GAGAGGAAATGCTGTGTCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGA
GATAAGACGACCCAAAGCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGA
TGTGGGAGCCACCTTGCAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATG
CTGCCCCGCTTCGATGCGATGTACTACCATCCCTCAAACAAGTGCCGCTG
CTACCAACGCACCTGGGTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGA
AGGTTTGCTGCCTGGACGCCATCGAACCTCCTGAGATTCTGTACCGGATC
AGGCCGCCCTGCCCAGGAACTTGCCAAATCAACTATAAGGCTCGAAGGCT
ACTCTGTGCGGATGGAGAATGGGAGCGGGACCCAACGAGGAAGTGTCCGA
AATTCTTTCACCCCTGTTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCC
AGAGGCAGAAAGCCTACCCTATGCACCAAGTTGCGAGCTCCATATCCTTG
TTACTCAGAAAAAATAAGAGGAACAAGACCGCTCCGAAAAAGAGAGTGCC
TTTGCTTGGAGACCACCCCGAAATGTATAGCTCTTGCGGAAAGAATGAGA
CGCGATGGATTAAATCTGTGAAAGCTTTCTAGACCAT
BS12795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-RB | 855 | CG30366-PB | 1..855 | 17..871 | 4275 | 100 | Plus |
swif-RA | 855 | CG30366-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-RB | 2074 | CG30366-RB | 1000..1855 | 16..871 | 4280 | 100 | Plus |
swif-RA | 1015 | CG30366-RA | 43..898 | 16..871 | 4280 | 100 | Plus |
cola-RA | 2074 | CG30363-RA | 1000..1855 | 16..871 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8363491..8364346 | 871..16 | 4280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:35:10 has no hits.
BS12795.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:58 Download gff for
BS12795.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-RB | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:11 Download gff for
BS12795.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-RB | 1000..1855 | 16..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:40 Download gff for
BS12795.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swif-RA | 44..897 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:58 Download gff for
BS12795.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-RB | 1000..1855 | 16..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:35 Download gff for
BS12795.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cola-RA | 1001..1854 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:35 Download gff for
BS12795.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8363492..8364345 | 17..870 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:40 Download gff for
BS12795.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4250997..4251850 | 17..870 | 100 | | Minus |
BS12795.pep Sequence
Translation from 16 to 870
> BS12795.pep
MQSALWIFCRQGFRSFATKAQGFRSFASKVTYHADPPCQPVDPLCHHVPS
GRCVQARETINLKLPHERLLKQERDQKKERKCCVLRSAAKNPCVEIRRPK
AAKLEEKPFRSMWEPPCKANEQPFCKEMLPRFDAMYYHPSNKCRCYQRTW
VECSPVKKRLKKVCCLDAIEPPEILYRIRPPCPGTCQINYKARRLLCADG
EWERDPTRKCPKFFHPCCKLARCNPRCSRGRKPTLCTKLRAPYPCYSEKI
RGTRPLRKRECLCLETTPKCIALAERMRRDGLNL*
BS12795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-PB | 284 | CG30366-PB | 1..284 | 1..284 | 1606 | 100 | Plus |
swif-PA | 284 | CG30366-PA | 1..284 | 1..284 | 1606 | 100 | Plus |
hubl-PB | 291 | CG30364-PB | 54..272 | 37..279 | 293 | 31 | Plus |
hubl-PA | 291 | CG30364-PA | 54..272 | 37..279 | 293 | 31 | Plus |
CG11635-PA | 286 | CG11635-PA | 41..235 | 88..279 | 219 | 33.6 | Plus |